Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0014480

Physical Location & Seq

Genomic Coordinates Reverse (-)

9862909 .. 9865432

Gene Structure 2524 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G009730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCGAGGTACGATAGGGCCATTACAGTCTTTTCTCCCGACGGCCATCTCTTCCAGGTCGAGTACGCCCTCGAAGCCGTGCGTAAGGGTAACGCCGCCGTCGGCGTCCGTGGCACCGACACCATCGTTCTTGGCGTCGAGAAGAAGTCCACCGCTAAGCTTCAGGACTCCAGATCGGTGAGGAAGATTGTGAACCTGGACAATCACATTGCTCTAGCCTGTGCTGGGCTCAAAGCAGATGCTCGTGTCCTGATAAACAAGGCGAGGATTGAATGTCAAAGCCATAGGCTTACTGTTGAGGATCCAGTAACAGTTGAGTATATAACGCGTTACATTGCTGGTCTTCAGCAAAAGTACACGCAGAGTGGTGGTGTGAGGCCATTTGGTCTTTCAACTTTGATTGTTGGGTTTGATCCATACACGAATAAACCAGCACTCTATCAGACAGATCCTTCAGGGACTTTTTCAGCATGGAAAGCGAATGCAACAGGAAGGAACTCCAATTCGATAAGGGAATTTCTGGAGAAAAACTACAAAGAAACTTCTGGGCAAGACACCATAAAGCTTGCGATCCGTGCTTTGCTTGAGGTTGTTGAAAGTGGAGGGAAGAACATAGAAGTTGCTGTCATGACAAAGGATCATGGTCTGCGACAACTTGAAGAAGCTGAAATCGATGCTATTGTTGCTGACATCGAAGCAGAGAAAGCAGCTGCTGAGGCTGCAAAGAAAGGACCTGCCAGGGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005819 GO:0005829 GO:0005839 GO:0005840 GO:0005856 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009524 GO:0009536 GO:0009987 GO:0015630 GO:0016020 GO:0019538 GO:0019773 GO:0019941 GO:0022626 GO:0030163 GO:0031090 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051603 GO:0071704 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

249

Amino Acids

27.16

Weight (kDa)

8.41

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	4 - 26	6e-14	Proteasome subunit A N-terminal signature
Proteasome	PF00227	27 - 210	1.1e-55	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51260 AT3G51260 AT5G66140
fragaria_vesca	FvH4_1g11520
malus_domestica	MD02G1128200.v1.1 MD15G1243400.v1.1
prunus_persica	Prupe.7G170800_v2.0.a1
pyrus_communis	pycom02g10020 pycom15g21440
rosa_chinensis	RchiOBHm_Chr2g0099151
rosa_laevigata	RLG00000016851
rosa_multiflora	Rmu_sc0012098.1_g000001 Rmu_sc0012711.1_g000003
rosa_roxburghii	Rroxscaffold_2G00143400
rosa_rugosa	Rorug02G0077200
rosa_samantha	Rh2AG126200
rosa_wichuraiana	Rw2G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	742
AccB1I	GGYRCC	1 cut(s)	113
AccII	CGCG	1 cut(s)	328
AciI	CCGC	2 cut(s)	96, 153
AclWI	GGATC	6 cut(s)	296, 309, 407, 443, 565, 645
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	3 cut(s)	146, 329, 438
AcyI	GRCGYC	2 cut(s)	105, 135
AfaI	GTAC	3 cut(s)	11, 65, 356
AfiI	CCNNNNNNNGG	1 cut(s)	225
AflIII	ACRYGT	1 cut(s)	326
AgsI	TTSAA	4 cut(s)	272, 393, 596, 659
AjnI	CCWGG	3 cut(s)	54, 195, 737
AluBI	AGCT	4 cut(s)	160, 565, 665, 710
AluI	AGCT	4 cut(s)	160, 565, 665, 710
AlwI	GGATC	6 cut(s)	296, 309, 407, 443, 565, 645
AlwNI	CAGNNNCTG	1 cut(s)	713
AoxI	GGCC	3 cut(s)	18, 43, 377
ApeKI	GCWGC	3 cut(s)	707, 710, 719
ApoI	RAATTY	1 cut(s)	515
AspS9I	GGNCC	2 cut(s)	18, 731
AsuHPI	GGTGA	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	731
BamHI	GGATCC	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	231
BauI	CACGAG	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	335
BbvCI	CCTCAGC	1 cut(s)	714
BbvI	GCAGC	3 cut(s)	697, 706, 719
BccI	CCATC	2 cut(s)	54, 131
BceAI	ACGGC	3 cut(s)	58, 62, 83
BciT130I	CCWGG	3 cut(s)	56, 197, 739
BfaI	CTAG	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	742
BisI	GCNGC	4 cut(s)	96, 708, 711, 720
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	4 cut(s)	97, 709, 712, 721
Bme1390I	CCNGG	3 cut(s)	56, 197, 739
Bme18I	GGWCC	1 cut(s)	731
BmgT120I	GGNCC	2 cut(s)	18, 731
BmiI	GGNNCC	2 cut(s)	115, 303
BmrFI	CCNGG	3 cut(s)	56, 197, 739
BmsI	GCATC	2 cut(s)	229, 664
BpiI	GAAGAC	1 cut(s)	335
BpmI	CTGGAG	2 cut(s)	154, 542
Bpu10I	CCTNAGC	1 cut(s)	714
Bpu1102I	GCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	605
Bsa29I	ATCGAT	1 cut(s)	672
BsaHI	GRCGYC	2 cut(s)	105, 135
BsaJI	CCNNGG	2 cut(s)	109, 738
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	305
Bse3DI	GCAATG	2 cut(s)	207, 333
BseBI	CCWGG	3 cut(s)	56, 197, 739
BseCI	ATCGAT	1 cut(s)	672
BseDI	CCNNGG	2 cut(s)	109, 738
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMI	GCAATG	2 cut(s)	207, 333
BseMII	CTCAG	1 cut(s)	705
BseNI	ACTGG	1 cut(s)	305
BseXI	GCAGC	3 cut(s)	697, 706, 719
BseYI	CCCAGC	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	328
BshFI	GGCC	3 cut(s)	20, 45, 379
BshNI	GGYRCC	1 cut(s)	113
BshVI	ATCGAT	1 cut(s)	672
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	472
BsmI	GAATGC	1 cut(s)	487
BsnI	GGCC	3 cut(s)	20, 45, 379
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	6 cut(s)	173, 301, 412, 448, 570, 637
Bsp1720I	GCTNAGC	1 cut(s)	156
BspACI	CCGC	2 cut(s)	96, 153
BspANI	GGCC	3 cut(s)	20, 45, 379
BspCNI	CTCAG	1 cut(s)	706
BspDI	ATCGAT	1 cut(s)	672
BspFNI	CGCG	1 cut(s)	328
BspHI	TCATGA	1 cut(s)	627
BspLI	GGNNCC	2 cut(s)	115, 303
BspMI	ACCTGC	1 cut(s)	742
BspPI	GGATC	6 cut(s)	296, 309, 407, 443, 565, 645
BspT107I	GGYRCC	1 cut(s)	113
BsrDI	GCAATG	2 cut(s)	207, 333
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	109, 738
BssMI	GATC	6 cut(s)	173, 301, 412, 448, 570, 637
BssNI	GRCGYC	2 cut(s)	105, 135
BssSI	CACGAG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	3 cut(s)	56, 197, 739
Bst4CI	ACNGT	3 cut(s)	28, 295, 313
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	2 cut(s)	105, 135
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	2 cut(s)	156, 714
BstDSI	CCRYGG	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	328
BstKTI	GATC	6 cut(s)	176, 304, 415, 451, 573, 640
BstMBI	GATC	6 cut(s)	173, 301, 412, 448, 570, 637
BstMWI	GCNNNNNNNGC	8 cut(s)	74, 111, 476, 575, 683, 704, 716, 719
BstNI	CCWGG	3 cut(s)	56, 197, 739
BstSCI	CCNGG	3 cut(s)	54, 195, 737
BstUI	CGCG	1 cut(s)	328
BstV1I	GCAGC	3 cut(s)	697, 706, 719
BstV2I	GAAGAC	1 cut(s)	335
BstX2I	RGATCY	2 cut(s)	301, 448
BstYI	RGATCY	2 cut(s)	301, 448
Bsu15I	ATCGAT	1 cut(s)	672
BsuRI	GGCC	3 cut(s)	20, 45, 379
BsuTUI	ATCGAT	1 cut(s)	672
BtgI	CCRYGG	1 cut(s)	109
BveI	ACCTGC	1 cut(s)	742
Cac8I	GCNNGC	1 cut(s)	567
CaiI	CAGNNNCTG	1 cut(s)	713
CciI	TCATGA	1 cut(s)	627
Cfr13I	GGNCC	2 cut(s)	18, 731
ClaI	ATCGAT	1 cut(s)	672
CseI	GACGC	2 cut(s)	94, 124
Csp6I	GTAC	3 cut(s)	10, 64, 355
CviAII	CATG	4 cut(s)	471, 628, 641, 747
CviQI	GTAC	3 cut(s)	10, 64, 355
DdeI	CTNAG	2 cut(s)	156, 714
DpnI	GATC	6 cut(s)	175, 303, 414, 450, 572, 639
DpnII	GATC	6 cut(s)	173, 301, 412, 448, 570, 637
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	731
Eco57I	CTGAAG	3 cut(s)	146, 329, 438
EcoO109I	RGGNCCY	1 cut(s)	731
EcoRII	CCWGG	3 cut(s)	54, 195, 737
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	4 cut(s)	474, 631, 644, 750
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	4 cut(s)	470, 627, 640, 746
Fnu4HI	GCNGC	4 cut(s)	96, 708, 711, 720
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	4 cut(s)	96, 708, 711, 720
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	4 cut(s)	96, 708, 711, 720
GsaI	CCCAGC	1 cut(s)	228
GsuI	CTGGAG	2 cut(s)	154, 542
HaeIII	GGCC	3 cut(s)	20, 45, 379
HgaI	GACGC	2 cut(s)	94, 124
Hin1I	GRCGYC	2 cut(s)	105, 135
Hin1II	CATG	4 cut(s)	474, 631, 644, 750
HindIII	AAGCTT	2 cut(s)	158, 563
HinfI	GANTC	1 cut(s)	167
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	3 cut(s)	150, 193, 357
Hpy188I	TCNGA	1 cut(s)	444
Hpy188III	TCNNGA	7 cut(s)	38, 139, 164, 171, 250, 521, 628
Hpy8I	GTNNAC	3 cut(s)	150, 193, 357
Hpy99I	CGWCG	3 cut(s)	44, 104, 140
HpyAV	CCTTC	2 cut(s)	462, 486
HpyCH4III	ACNGT	3 cut(s)	28, 295, 313
HpyCH4V	TGCA	2 cut(s)	485, 722
HpyF10VI	GCNNNNNNNGC	8 cut(s)	74, 111, 476, 575, 683, 704, 716, 719
HpyF3I	CTNAG	2 cut(s)	156, 714
Hsp92I	GRCGYC	2 cut(s)	105, 135
Hsp92II	CATG	4 cut(s)	474, 631, 644, 750
Kzo9I	GATC	6 cut(s)	173, 301, 412, 448, 570, 637
Lsp1109I	GCAGC	3 cut(s)	697, 706, 719
LweI	GCATC	2 cut(s)	229, 664
MaeI	CTAG	1 cut(s)	215
MaeIII	GTNAC	3 cut(s)	89, 307, 329
MalI	GATC	6 cut(s)	175, 303, 414, 450, 572, 639
MboI	GATC	6 cut(s)	173, 301, 412, 448, 570, 637
MboII	GAAGA	6 cut(s)	43, 154, 196, 335, 619, 671
MflI	RGATCY	2 cut(s)	301, 448
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	2 cut(s)	502, 515
MluI	ACGCGT	1 cut(s)	326
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	8 cut(s)	80, 174, 258, 292, 369, 580, 596, 709
MspA1I	CMGCKG	1 cut(s)	710
MspR9I	CCNGG	3 cut(s)	56, 197, 739
Mva1269I	GAATGC	1 cut(s)	487
MvaI	CCWGG	3 cut(s)	56, 197, 739
MvnI	CGCG	1 cut(s)	328
MwoI	GCNNNNNNNGC	8 cut(s)	74, 111, 476, 575, 683, 704, 716, 719
NdeII	GATC	6 cut(s)	173, 301, 412, 448, 570, 637
NlaIII	CATG	4 cut(s)	474, 631, 644, 750
NlaIV	GGNNCC	2 cut(s)	115, 303
PagI	TCATGA	1 cut(s)	627
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PctI	GAATGC	1 cut(s)	487
PkrI	GCNGC	4 cut(s)	97, 709, 712, 721
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PpuMI	RGGWCCY	1 cut(s)	731
Psp5II	RGGWCCY	1 cut(s)	731
Psp6I	CCWGG	3 cut(s)	54, 195, 737
PspFI	CCCAGC	1 cut(s)	224
PspGI	CCWGG	3 cut(s)	54, 195, 737
PspN4I	GGNNCC	2 cut(s)	115, 303
PspPI	GGNCC	2 cut(s)	18, 731
PspPPI	RGGWCCY	1 cut(s)	731
PstNI	CAGNNNCTG	1 cut(s)	713
PsuI	RGATCY	2 cut(s)	301, 448
PvuII	CAGCTG	1 cut(s)	710
RsaI	GTAC	3 cut(s)	11, 65, 356
RsaNI	GTAC	3 cut(s)	10, 64, 355
SatI	GCNGC	4 cut(s)	96, 708, 711, 720
Sau3AI	GATC	6 cut(s)	173, 301, 412, 448, 570, 637
Sau96I	GGNCC	2 cut(s)	18, 731
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	3 cut(s)	56, 197, 739
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	9 cut(s)	11, 60, 162, 198, 567, 591, 667, 712, 736
SfaNI	GCATC	2 cut(s)	229, 664
SinI	GGWCC	1 cut(s)	731
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	2 cut(s)	502, 515
SsiI	CCGC	2 cut(s)	96, 153
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	3 cut(s)	54, 195, 737
TaaI	ACNGT	3 cut(s)	28, 295, 313
TaqI	TCGA	6 cut(s)	60, 72, 138, 506, 672, 693
TasI	AATT	2 cut(s)	502, 515
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	1 cut(s)	98
TseI	GCWGC	3 cut(s)	707, 710, 719
TspGWI	ACGGA	2 cut(s)	98, 563
VpaK11BI	GGWCC	1 cut(s)	731
XapI	RAATTY	1 cut(s)	515
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.