AT3G51510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008426
Physical Location & Seq
Forward (+)
19108990 .. 19110372
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51510.1

Sequence Viewer

Length: 546 bp
ATGGCCGCGTCTCTAACATCTCTTCCGACCGGTTTTTGTCTTAGCCATGGTGATGAATGTTGCAACCGTTCACCTACCAAATCACCATTTCCAGGCCATCATCCTCTGGCTGGGAGGAGGAAGGGTCACTTGCTCCATTACGAACGTAGTACAGTGAGGAGATTGGTTGTGACGGCGGCGACGGAGGGATCTAAAAAATCTAAAGAAAGTGAACCGTCTTGGGCGAATCCTGACTCAGATGAGCCACCTCCTTGGGCTAGAAACGAAGGTCGTTCTTCTACGTCCCAAGAGAGCTTTGAGGTTCCTTTCTTTGTTTATCTGCTAGCTTCCGCGATTACTGCCATTGCTGCTATTGGTTCTGTTTTCGAGTACACAAGCAAGAATCCAGTTTTCGGGATCTTGGAATCTGACAGCATCTTTTATACTCCTGTGCTTGGATTCTTTGCTCTTACTGGAATCCCCACTTCTGTGTTCCTATGGTTCAAATCCGTTGAAGCTGCTAATAAGGAAGCTCAAGAACAAGATAAAAGAGATGGCTTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

19.85

Weight (kDa)

6.21

Isoelectric Point (pI)

60.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 8, 332
AciI CCGC 3 cut(s) 6, 176, 330
AclWI GGATC 2 cut(s) 196, 404
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 151, 371
AfiI CCNNNNNNNGG 4 cut(s) 92, 110, 392, 434
AgeI ACCGGT 1 cut(s) 29
AgsI TTSAA 2 cut(s) 484, 494
AjnI CCWGG 1 cut(s) 91
AleI CACNNNNGTG 1 cut(s) 467
AluBI AGCT 4 cut(s) 294, 326, 497, 512
AluI AGCT 4 cut(s) 294, 326, 497, 512
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 2 cut(s) 196, 404
AoxI GGCC 2 cut(s) 3, 94
ApeKI GCWGC 2 cut(s) 347, 497
AsiGI ACCGGT 1 cut(s) 29
AsuHPI GGTGA 3 cut(s) 62, 63, 75
AsuNHI GCTAGC 1 cut(s) 322
BbvI GCAGC 2 cut(s) 334, 484
BccI CCATC 2 cut(s) 105, 527
BceAI ACGGC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 2 cut(s) 258, 323
BisI GCNGC 4 cut(s) 6, 177, 348, 498
BlsI GCNGC 4 cut(s) 7, 178, 349, 499
Bme1390I CCNGG 1 cut(s) 93
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 1 cut(s) 93
BmsI GCATC 1 cut(s) 423
BmtI GCTAGC 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 498
BsaJI CCNNGG 2 cut(s) 46, 251
BsaWI WCCGGW 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 4 cut(s) 92, 110, 392, 434
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 2 cut(s) 386, 457
Bse3DI GCAATG 1 cut(s) 342
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 46, 251
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 4 cut(s) 92, 110, 392, 434
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 2 cut(s) 386, 457
BseRI GAGGAG 2 cut(s) 130, 172
BseXI GCAGC 2 cut(s) 334, 484
BseYI CCCAGC 1 cut(s) 110
Bsh1236I CGCG 2 cut(s) 8, 332
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 2 cut(s) 5, 96
BshTI ACCGGT 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 30
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 4 cut(s) 92, 110, 392, 434
BsmAI GTCTC 1 cut(s) 15
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 268
BsnI GGCC 2 cut(s) 5, 96
Bsp143I GATC 2 cut(s) 188, 396
Bsp19I CCATGG 1 cut(s) 46
BspACI CCGC 3 cut(s) 6, 176, 330
BspANI GGCC 2 cut(s) 5, 96
BspCNI CTCAG 1 cut(s) 248
BspFNI CGCG 2 cut(s) 8, 332
BspLI GGNNCC 1 cut(s) 303
BspOI GCTAGC 1 cut(s) 326
BspPI GGATC 2 cut(s) 196, 404
BsrDI GCAATG 1 cut(s) 342
BsrFI RCCGGY 1 cut(s) 29
BsrI ACTGG 2 cut(s) 386, 457
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 2 cut(s) 46, 251
BssMI GATC 2 cut(s) 188, 396
BssT1I CCWWGG 2 cut(s) 46, 251
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 3 cut(s) 68, 154, 216
Bst6I CTCTTC 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 2 cut(s) 41, 235
BstDSI CCRYGG 1 cut(s) 46
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 2 cut(s) 8, 332
BstKTI GATC 2 cut(s) 191, 399
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 2 cut(s) 188, 396
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 2 cut(s) 338, 347
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 91
BstUI CGCG 2 cut(s) 8, 332
BstV1I GCAGC 2 cut(s) 334, 484
BstX2I RGATCY 2 cut(s) 188, 396
BstXI CCANNNNNNTGG 1 cut(s) 252
BstYI RGATCY 2 cut(s) 188, 396
BsuRI GGCC 2 cut(s) 5, 96
BtgI CCRYGG 1 cut(s) 46
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 324
Cfr10I RCCGGY 1 cut(s) 29
Csp6I GTAC 2 cut(s) 150, 370
CspAI ACCGGT 1 cut(s) 29
CviAII CATG 1 cut(s) 47
CviQI GTAC 2 cut(s) 150, 370
DdeI CTNAG 2 cut(s) 41, 235
DpnI GATC 2 cut(s) 190, 398
DpnII GATC 2 cut(s) 188, 396
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco130I CCWWGG 2 cut(s) 46, 251
EcoRII CCWGG 1 cut(s) 91
EcoT14I CCWWGG 2 cut(s) 46, 251
ErhI CCWWGG 2 cut(s) 46, 251
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 1 cut(s) 50
FaiI YATR 3 cut(s) 48, 423, 478
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 1 cut(s) 268
FatI CATG 1 cut(s) 46
Fnu4HI GCNGC 4 cut(s) 6, 177, 348, 498
FokI GGATG 1 cut(s) 87
Fsp4HI GCNGC 4 cut(s) 6, 177, 348, 498
FspBI CTAG 2 cut(s) 258, 323
GluI GCNGC 4 cut(s) 6, 177, 348, 498
GsaI CCCAGC 1 cut(s) 114
HaeIII GGCC 2 cut(s) 5, 96
HapII CCGG 1 cut(s) 30
Hin1II CATG 1 cut(s) 50
HinfI GANTC 6 cut(s) 226, 233, 382, 404, 438, 456
HpaII CCGG 1 cut(s) 30
HphI GGTGA 3 cut(s) 62, 63, 75
Hpy166II GTNNAC 3 cut(s) 71, 212, 372
Hpy188I TCNGA 3 cut(s) 27, 238, 409
Hpy188III TCNNGA 3 cut(s) 230, 394, 515
Hpy8I GTNNAC 3 cut(s) 71, 212, 372
Hpy99I CGWCG 1 cut(s) 184
HpyAV CCTTC 2 cut(s) 115, 260
HpyCH4III ACNGT 3 cut(s) 68, 154, 216
HpyCH4IV ACGT 2 cut(s) 145, 281
HpyCH4V TGCA 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 347
HpyF3I CTNAG 2 cut(s) 41, 235
HpySE526I ACGT 2 cut(s) 145, 281
Hsp92II CATG 1 cut(s) 50
Kzo9I GATC 2 cut(s) 188, 396
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 9 cut(s) 43, 78, 92, 96, 105, 243, 399, 438, 441
Lsp1109I GCAGC 2 cut(s) 334, 484
LweI GCATC 1 cut(s) 423
MaeI CTAG 2 cut(s) 258, 323
MaeII ACGT 2 cut(s) 145, 281
MaeIII GTNAC 2 cut(s) 125, 169
MalI GATC 2 cut(s) 190, 398
MboI GATC 2 cut(s) 188, 396
MboII GAAGA 2 cut(s) 14, 267
MflI RGATCY 2 cut(s) 188, 396
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 50
MnlI CCTC 7 cut(s) 108, 111, 114, 150, 178, 258, 292
MseI TTAA 1 cut(s) 544
MslI CAYNNNNRTG 2 cut(s) 51, 467
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
MvnI CGCG 2 cut(s) 8, 332
MwoI GCNNNNNNNGC 2 cut(s) 338, 347
NcoI CCATGG 1 cut(s) 46
NdeII GATC 2 cut(s) 188, 396
NheI GCTAGC 1 cut(s) 322
NlaIII CATG 1 cut(s) 50
NlaIV GGNNCC 1 cut(s) 303
NmuCI GTSAC 2 cut(s) 125, 169
OliI CACNNNNGTG 1 cut(s) 467
PfeI GAWTC 5 cut(s) 226, 382, 404, 438, 456
PinAI ACCGGT 1 cut(s) 29
PkrI GCNGC 4 cut(s) 7, 178, 349, 499
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 91
PspFI CCCAGC 1 cut(s) 110
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 303
PsuI RGATCY 2 cut(s) 188, 396
RsaI GTAC 2 cut(s) 151, 371
RsaNI GTAC 2 cut(s) 150, 370
RseI CAYNNNNRTG 2 cut(s) 51, 467
SaqAI TTAA 1 cut(s) 544
SatI GCNGC 4 cut(s) 6, 177, 348, 498
Sau3AI GATC 2 cut(s) 188, 396
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 93
SfaNI GCATC 1 cut(s) 423
SmiMI CAYNNNNRTG 2 cut(s) 51, 467
SmlI CTYRAG 1 cut(s) 513
SmoI CTYRAG 1 cut(s) 513
SsiI CCGC 3 cut(s) 6, 176, 330
SspMI CTAG 2 cut(s) 258, 323
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 2 cut(s) 46, 251
TaaI ACNGT 3 cut(s) 68, 154, 216
TaiI ACGT 2 cut(s) 148, 284
TaqI TCGA 1 cut(s) 366
TatI WGTACW 2 cut(s) 149, 369
TauI GCSGC 2 cut(s) 8, 179
TfiI GAWTC 5 cut(s) 226, 382, 404, 438, 456
Tru1I TTAA 1 cut(s) 544
Tru9I TTAA 1 cut(s) 544
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 2 cut(s) 125, 169
TseI GCWGC 2 cut(s) 347, 497
Tsp45I GTSAC 2 cut(s) 125, 169
TspDTI ATGAA 1 cut(s) 69
TspGWI ACGGA 2 cut(s) 197, 478
TspRI CASTG 1 cut(s) 159
XspI CTAG 2 cut(s) 258, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.