pycom15g20180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0008426
Physical Location & Seq
Forward (+)
14408611 .. 14409080
470 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g20180.2

Sequence Viewer

Length: 384 bp
ATGGCCGCAACCTTCTTGTTTGCGTGCAATTTTAATGTAAACCATGGCTGTATGAATGATAATCCGTTACCCAAACTGTTCTTGGGTGCTGGACACAGAATCCGGGATCAAACTCTTTCAAATAGAAACCAAACCCATCAATGCTTTCTAACAAGGAAGTCCTCTCGTAGGTTTTCCATTTCTGCTGTCACCAAAGGTTCCGCGAAATCAAGCAAGTCTGATGAGAAAATCCCCTCGTGGGCTAAACCGGATTCAGACGAGCCTCCTCCTTGGGCACAGGATGAAGGCAAGAAAGATGATGCACAAGAGGGATTTGAGGTTCCTTTTTTCGTTTATCTACTTGCCTCAGCGATCACTGCAATTGCTGCAAGGTTCTGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.14

Weight (kDa)

8.76

Isoelectric Point (pI)

31.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 203
AciI CCGC 2 cut(s) 6, 201
AclWI GGATC 1 cut(s) 114
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 2 cut(s) 168, 238
AgsI TTSAA 1 cut(s) 120
AloI GAACNNNNNNTCC 2 cut(s) 303, 335
AlwI GGATC 1 cut(s) 114
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 365
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 277
BauI CACGAG 1 cut(s) 235
BbvCI CCTCAGC 1 cut(s) 346
BbvI GCAGC 1 cut(s) 352
BccI CCATC 1 cut(s) 144
BcnI CCSGG 1 cut(s) 104
BisI GCNGC 2 cut(s) 6, 366
BlsI GCNGC 2 cut(s) 7, 367
Bme1390I CCNGG 1 cut(s) 104
BmiI GGNNCC 2 cut(s) 199, 321
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 289
Bpu10I CCTNAGC 1 cut(s) 346
BpuMI CCSGG 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 43, 269
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 238
BseDI CCNNGG 2 cut(s) 43, 269
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 2 cut(s) 168, 238
BseMII CTCAG 1 cut(s) 360
BseRI GAGGAG 1 cut(s) 255
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 1 cut(s) 352
Bsh1236I CGCG 1 cut(s) 203
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 2 cut(s) 103, 248
BslI CCNNNNNNNGG 2 cut(s) 168, 238
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 2 cut(s) 106, 351
Bsp19I CCATGG 1 cut(s) 43
BspACI CCGC 2 cut(s) 6, 201
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 359
BspFNI CGCG 1 cut(s) 203
BspLI GGNNCC 2 cut(s) 199, 321
BspPI GGATC 1 cut(s) 114
BssECI CCNNGG 2 cut(s) 43, 269
BssMI GATC 2 cut(s) 106, 351
BssSI CACGAG 1 cut(s) 235
BssT1I CCWWGG 2 cut(s) 43, 269
Bst2BI CACGAG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 1 cut(s) 346
BstDSI CCRYGG 1 cut(s) 43
BstENI CCTNNNNNAGG 1 cut(s) 166
BstF5I GGATG 1 cut(s) 286
BstFNI CGCG 1 cut(s) 203
BstKTI GATC 2 cut(s) 109, 354
BstMBI GATC 2 cut(s) 106, 351
BstMWI GCNNNNNNNGC 2 cut(s) 356, 365
BstSCI CCNGG 1 cut(s) 102
BstSLI GKGCMC 1 cut(s) 277
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 352
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 43
BtsCI GGATG 1 cut(s) 286
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 1 cut(s) 25
CviAII CATG 1 cut(s) 44
CviJI RGCY 4 cut(s) 5, 48, 242, 262
CviKI_1 RGCY 4 cut(s) 5, 48, 242, 262
DdeI CTNAG 1 cut(s) 346
DpnI GATC 2 cut(s) 108, 353
DpnII GATC 2 cut(s) 106, 351
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 43, 269
EcoNI CCTNNNNNAGG 1 cut(s) 166
EcoT14I CCWWGG 2 cut(s) 43, 269
ErhI CCWWGG 2 cut(s) 43, 269
FaeI CATG 1 cut(s) 47
FaiI YATR 2 cut(s) 45, 53
FatI CATG 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 6, 366
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 2 cut(s) 6, 366
GluI GCNGC 2 cut(s) 6, 366
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 103, 248
Hin1II CATG 1 cut(s) 47
HinfI GANTC 2 cut(s) 99, 251
HpaII CCGG 2 cut(s) 103, 248
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 2 cut(s) 220, 256
Hpy8I GTNNAC 1 cut(s) 40
HpyAV CCTTC 2 cut(s) 22, 278
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4V TGCA 4 cut(s) 27, 302, 359, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 365
HpyF3I CTNAG 1 cut(s) 346
Hsp92II CATG 1 cut(s) 47
Kzo9I GATC 2 cut(s) 106, 351
LpnPI CCDG 4 cut(s) 75, 116, 261, 263
Lsp1109I GCAGC 1 cut(s) 352
LweI GCATC 1 cut(s) 289
MaeIII GTNAC 2 cut(s) 66, 187
MalI GATC 2 cut(s) 108, 353
MboI GATC 2 cut(s) 106, 351
MfeI CAATTG 1 cut(s) 360
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 2 cut(s) 28, 360
MnlI CCTC 7 cut(s) 172, 244, 273, 276, 301, 310, 355
MseI TTAA 1 cut(s) 33
MspI CCGG 2 cut(s) 103, 248
MspR9I CCNGG 1 cut(s) 104
MunI CAATTG 1 cut(s) 360
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 2 cut(s) 356, 365
NciI CCSGG 1 cut(s) 104
NcoI CCATGG 1 cut(s) 43
NdeII GATC 2 cut(s) 106, 351
NlaIII CATG 1 cut(s) 47
NlaIV GGNNCC 2 cut(s) 199, 321
NmuCI GTSAC 1 cut(s) 187
PfeI GAWTC 2 cut(s) 99, 251
PfoI TCCNGGA 1 cut(s) 102
PkrI GCNGC 2 cut(s) 7, 367
PspN4I GGNNCC 2 cut(s) 199, 321
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 2 cut(s) 6, 366
Sau3AI GATC 2 cut(s) 106, 351
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 1 cut(s) 277
SetI ASST 5 cut(s) 14, 173, 199, 321, 374
SfaNI GCATC 1 cut(s) 289
Sse9I AATT 2 cut(s) 28, 360
SsiI CCGC 2 cut(s) 6, 201
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 2 cut(s) 43, 269
TaaI ACNGT 1 cut(s) 78
TasI AATT 2 cut(s) 28, 360
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 99, 251
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 1 cut(s) 365
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 2 cut(s) 68, 297
TspGWI ACGGA 1 cut(s) 54
TspRI CASTG 1 cut(s) 361
XagI CCTNNNNNAGG 1 cut(s) 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.