Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008426

Physical Location & Seq

Genomic Coordinates Forward (+)

5967909 .. 5970088

Gene Structure 2180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08620.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGACAGTGAAGAAGGCACGTGAACACGTACATAAAGCAAGTCCTTTTCTTCATCAAGGTGAGCGGCAGAAAAAGACAAGGATTCTTAAACGTGATCATACAAAACAGGAACACACGAAAAGGCACGGGAAGTGGAATGGCAGACAATCTGTGTCTCAAGATAGTTGGCATCTGATGTTGAAAAAAATAGGGAAAAAAAAAAAAAAAAAACAAAGAAGGAATGTGAGAGAGAGAGAGAGAGAGATAGCAGAGCATCAACTGGTACAAATAAAACACAAACAGAACACCAGCAAAGAAGTAACAGAAAGAGAGAACAAGAAAGAGGAACAAACTATGGCTGCGACCGTGTTGTTTGCATGCCATTCCAATATAATTGTAAACCACGGCTGTAGAAATGATTATCTGTCATTACGCAAATCATTCTTGGGTGTTGGACACAGAATCCTGGATCAAACCATTGCCAACAGAAATCAAAACCATAACAGCTTTCAAAAAAAGAAGTCATCTGATAGGTTTTCCGTTTCTGCTGTCACCAAAGGTTCTGCAAAATCAAGCAAGTCCGATGAGAAAATCCCCCCTTGGGCTAAACCAGATTCGGACGAGCCCCCTCCTTGGGCCCAGAATGAAGGCAAGAAAGATGATTCACAAGAGGGATTTGAGATTCCCTTTTTTGTTTATCTGTTCGCCTCAGCAATCACTGCAATCGCTGCGATAGGTTCTGTTTTCGAGTATGTGAACGAGAAGCCAGTCTTTGGAATCTTGAGTTCAGACAGCATATTTTATGCTCCAGTGCTTGGAGTTTTTGCATTTACTGGCATCCCCACTTCTGCGTTCCTGTGGTTTAAATCTGTTCAAACTGCTAACAAGGAAGCTGAGGAGCAAGACAAGAGGGATGGCTATCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

34.6

Weight (kDa)

9.88

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51510
fragaria_vesca	FvH4_1g09790 FvH4_1g09790 FvH4_1g09790 FvH4_1g09790
malus_domestica	MD02G1107600.v1.1 MD15G1226900.v1.1
prunus_persica	Prupe.7G188400_v2.0.a1 Prupe.7G188400_v2.0.a1 Prupe.7G188400_v2.0.a1 Prupe.7G188400_v2.0.a1
pyrus_communis	pycom02g08620 pycom15g20180
rosa_chinensis	RchiOBHm_Chr2g0096661
rosa_laevigata	RLG00000016659
rosa_roxburghii	Rroxscaffold_2G00145440
rosa_rugosa	Rorug02G0059300 Rorug02G0059400
rosa_samantha	Rh2AG106800 Rh2BG109200 Rh2CG111000 Rh2DG110600
rosa_wichuraiana	Rw2G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	752, 794
AccBSI	CCGCTC	1 cut(s)	64
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	1 cut(s)	456
AcvI	CACGTG	1 cut(s)	20
AfaI	GTAC	2 cut(s)	30, 264
AfiI	CCNNNNNNNGG	5 cut(s)	580, 612, 613, 752, 794
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	3 cut(s)	181, 491, 854
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	2 cut(s)	486, 872
AluI	AGCT	2 cut(s)	486, 872
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	456
AoxI	GGCC	1 cut(s)	615
ApaI	GGGCCC	1 cut(s)	619
ApeKI	GCWGC	2 cut(s)	338, 707
AspS9I	GGNCC	2 cut(s)	615, 616
AsuHPI	GGTGA	2 cut(s)	71, 523
BaeGI	GKGCMC	1 cut(s)	619
BanII	GRGCYC	2 cut(s)	606, 619
BbrPI	CACGTG	1 cut(s)	20
BbvCI	CCTCAGC	2 cut(s)	688, 873
BbvI	GCAGC	2 cut(s)	325, 694
BccI	CCATC	1 cut(s)	887
BceAI	ACGGC	1 cut(s)	400
BciT130I	CCWGG	1 cut(s)	446
BclI	TGATCA	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	388
BisI	GCNGC	3 cut(s)	65, 339, 708
BlsI	GCNGC	3 cut(s)	66, 340, 709
Bme1390I	CCNGG	1 cut(s)	446
BmgT120I	GGNCC	2 cut(s)	615, 616
BmiI	GGNNCC	1 cut(s)	617
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	3 cut(s)	178, 262, 825
BpmI	CTGGAG	1 cut(s)	771
Bpu10I	CCTNAGC	2 cut(s)	688, 873
BpuEI	CTTGAG	2 cut(s)	141, 781
Bsa29I	ATCGAT	1 cut(s)	901
BsaAI	YACGTR	2 cut(s)	20, 28
BsaBI	GATNNNNATC	1 cut(s)	897
BsaJI	CCNNGG	3 cut(s)	382, 578, 611
Bsc4I	CCNNNNNNNGG	5 cut(s)	580, 612, 613, 752, 794
Bse1I	ACTGG	4 cut(s)	264, 746, 788, 817
Bse3DI	GCAATG	1 cut(s)	456
Bse8I	GATNNNNATC	1 cut(s)	897
BseBI	CCWGG	1 cut(s)	446
BseCI	ATCGAT	1 cut(s)	901
BseDI	CCNNGG	3 cut(s)	382, 578, 611
BseGI	GGATG	2 cut(s)	816, 898
BseJI	GATNNNNATC	1 cut(s)	897
BseLI	CCNNNNNNNGG	5 cut(s)	580, 612, 613, 752, 794
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	2 cut(s)	702, 864
BseNI	ACTGG	4 cut(s)	264, 746, 788, 817
BseRI	GAGGAG	1 cut(s)	890
BseSI	GKGCMC	1 cut(s)	619
BseXI	GCAGC	2 cut(s)	325, 694
Bsh1285I	CGRYCG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	617
BshVI	ATCGAT	1 cut(s)	901
BsiEI	CGRYCG	1 cut(s)	345
BslI	CCNNNNNNNGG	5 cut(s)	580, 612, 613, 752, 794
BsmAI	GTCTC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	617
Bsp120I	GGGCCC	1 cut(s)	615
Bsp1286I	GDGCHC	2 cut(s)	606, 619
Bsp143I	GATC	2 cut(s)	94, 448
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	617
BspCNI	CTCAG	2 cut(s)	701, 865
BspDI	ATCGAT	1 cut(s)	901
BspLI	GGNNCC	1 cut(s)	617
BspPI	GGATC	1 cut(s)	456
BsrBI	CCGCTC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	456
BsrI	ACTGG	4 cut(s)	264, 746, 788, 817
BssECI	CCNNGG	3 cut(s)	382, 578, 611
BssMI	GATC	2 cut(s)	94, 448
BssT1I	CCWWGG	2 cut(s)	578, 611
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	2 cut(s)	7, 346
BstAPI	GCANNNNNTGC	2 cut(s)	698, 707
BstBAI	YACGTR	2 cut(s)	20, 28
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	2 cut(s)	688, 873
BstDSI	CCRYGG	1 cut(s)	382
BstF5I	GGATG	2 cut(s)	816, 898
BstKTI	GATC	2 cut(s)	97, 451
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	2 cut(s)	94, 448
BstMCI	CGRYCG	1 cut(s)	345
BstMWI	GCNNNNNNNGC	2 cut(s)	698, 707
BstNI	CCWGG	1 cut(s)	446
BstNSI	RCATGY	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	444
BstSFI	CTRYAG	1 cut(s)	388
BstSLI	GKGCMC	1 cut(s)	619
BstV1I	GCAGC	2 cut(s)	325, 694
Bsu15I	ATCGAT	1 cut(s)	901
BsuRI	GGCC	1 cut(s)	617
BsuTUI	ATCGAT	1 cut(s)	901
BtgI	CCRYGG	1 cut(s)	382
BtsCI	GGATG	2 cut(s)	816, 898
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	3 cut(s)	12, 696, 795
Cac8I	GCNNGC	1 cut(s)	358
Cfr13I	GGNCC	2 cut(s)	615, 616
ClaI	ATCGAT	1 cut(s)	901
Csp6I	GTAC	2 cut(s)	29, 263
CviAII	CATG	1 cut(s)	357
CviJI	RGCY	9 cut(s)	338, 387, 486, 584, 604, 617, 745, 872, 897
CviKI_1	RGCY	9 cut(s)	338, 387, 486, 584, 604, 617, 745, 872, 897
CviQI	GTAC	2 cut(s)	29, 263
DdeI	CTNAG	2 cut(s)	688, 873
DpnI	GATC	2 cut(s)	96, 450
DpnII	GATC	2 cut(s)	94, 448
DraI	TTTAAA	1 cut(s)	844
Eco130I	CCWWGG	2 cut(s)	578, 611
Eco24I	GRGCYC	2 cut(s)	606, 619
Eco72I	CACGTG	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	444
EcoT14I	CCWWGG	2 cut(s)	578, 611
EcoT38I	GRGCYC	2 cut(s)	606, 619
ErhI	CCWWGG	2 cut(s)	578, 611
FaeI	CATG	1 cut(s)	360
FaiI	YATR	9 cut(s)	33, 99, 335, 358, 371, 480, 732, 776, 783
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FatI	CATG	1 cut(s)	356
FbaI	TGATCA	1 cut(s)	94
Fnu4HI	GCNGC	3 cut(s)	65, 339, 708
FokI	GGATG	1 cut(s)	803
FriOI	GRGCYC	2 cut(s)	606, 619
Fsp4HI	GCNGC	3 cut(s)	65, 339, 708
GluI	GCNGC	3 cut(s)	65, 339, 708
GsuI	CTGGAG	1 cut(s)	771
HaeIII	GGCC	1 cut(s)	617
Hin1II	CATG	1 cut(s)	360
HinfI	GANTC	6 cut(s)	82, 441, 593, 641, 661, 756
HphI	GGTGA	2 cut(s)	71, 523
Hpy166II	GTNNAC	3 cut(s)	23, 379, 736
Hpy188I	TCNGA	5 cut(s)	174, 508, 562, 598, 769
Hpy188III	TCNNGA	2 cut(s)	158, 760
Hpy8I	GTNNAC	3 cut(s)	23, 379, 736
HpyAV	CCTTC	3 cut(s)	7, 210, 620
HpyCH4III	ACNGT	2 cut(s)	7, 346
HpyCH4IV	ACGT	3 cut(s)	19, 27, 91
HpyCH4V	TGCA	4 cut(s)	356, 545, 701, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	698, 707
HpyF3I	CTNAG	2 cut(s)	688, 873
HpySE526I	ACGT	3 cut(s)	19, 27, 91
Hsp92II	CATG	1 cut(s)	360
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	94, 448
LmnI	GCTCC	2 cut(s)	790, 877
Lsp1109I	GCAGC	2 cut(s)	325, 694
LweI	GCATC	3 cut(s)	178, 262, 825
MaeII	ACGT	3 cut(s)	19, 27, 91
MaeIII	GTNAC	2 cut(s)	298, 529
MalI	GATC	2 cut(s)	96, 450
MbiI	CCGCTC	1 cut(s)	64
MboI	GATC	2 cut(s)	94, 448
MboII	GAAGA	2 cut(s)	22, 41
MhlI	GDGCHC	2 cut(s)	606, 619
MluCI	AATT	1 cut(s)	372
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	6 cut(s)	316, 618, 643, 697, 868, 882
MseI	TTAA	2 cut(s)	87, 843
MslI	CAYNNNNRTG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	446
MwoI	GCNNNNNNNGC	2 cut(s)	698, 707
NdeII	GATC	2 cut(s)	94, 448
NlaIII	CATG	1 cut(s)	360
NlaIV	GGNNCC	1 cut(s)	617
NmuCI	GTSAC	1 cut(s)	529
NspI	RCATGY	1 cut(s)	360
PaeI	GCATGC	1 cut(s)	360
PfeI	GAWTC	6 cut(s)	82, 441, 593, 641, 661, 756
PflMI	CCANNNNNTGG	2 cut(s)	752, 794
PfoI	TCCNGGA	1 cut(s)	444
PkrI	GCNGC	3 cut(s)	66, 340, 709
PmaCI	CACGTG	1 cut(s)	20
PmlI	CACGTG	1 cut(s)	20
Ppu21I	YACGTR	2 cut(s)	20, 28
Psp6I	CCWGG	1 cut(s)	444
PspCI	CACGTG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	617
PspOMI	GGGCCC	1 cut(s)	615
PspPI	GGNCC	2 cut(s)	615, 616
RsaI	GTAC	2 cut(s)	30, 264
RsaNI	GTAC	2 cut(s)	29, 263
RseI	CAYNNNNRTG	1 cut(s)	57
SaqAI	TTAA	2 cut(s)	87, 843
SatI	GCNGC	3 cut(s)	65, 339, 708
Sau3AI	GATC	2 cut(s)	94, 448
Sau96I	GGNCC	2 cut(s)	615, 616
ScrFI	CCNGG	1 cut(s)	446
SduI	GDGCHC	2 cut(s)	606, 619
SetI	ASST	9 cut(s)	22, 30, 61, 94, 488, 515, 541, 718, 874
SfaNI	GCATC	3 cut(s)	178, 262, 825
SfcI	CTRYAG	1 cut(s)	388
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	2 cut(s)	156, 760
SmoI	CTYRAG	2 cut(s)	156, 760
SphI	GCATGC	1 cut(s)	360
Sse9I	AATT	1 cut(s)	372
SsiI	CCGC	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	444
StyI	CCWWGG	2 cut(s)	578, 611
TaaI	ACNGT	2 cut(s)	7, 346
TaiI	ACGT	3 cut(s)	22, 30, 94
TaqI	TCGA	2 cut(s)	726, 901
TasI	AATT	1 cut(s)	372
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	6 cut(s)	82, 441, 593, 641, 661, 756
Tru1I	TTAA	2 cut(s)	87, 843
Tru9I	TTAA	2 cut(s)	87, 843
TscAI	CASTG	3 cut(s)	12, 703, 795
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	2 cut(s)	338, 707
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	2 cut(s)	41, 639
TspGWI	ACGGA	1 cut(s)	508
TspRI	CASTG	3 cut(s)	12, 703, 795
Van91I	CCANNNNNTGG	2 cut(s)	752, 794
XceI	RCATGY	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.