Rroxscaffold_2G00145440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008426
Physical Location & Seq
Reverse (-)
83374666 .. 83376994
2329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00145440.1

Sequence Viewer

Length: 567 bp
ATGGCTGCAACATTGTTGGTTTCATGCAATCCGAATGTAAGCCATGCATGTAGAAATGATAATCCACCATTACCCAAATCTTTCATGGGTGTTGGACACAAAATCCTGGATCCAACTAGTGCAAGTGTAAACCAAGGGCATTATAGCTCTCAAACCAAGAGGTCGTCTCATCGGTTTTCTGTTTCTGCTGTCACCAAAGGTTCTGCAAAATCAAGCAAGTCCGACGAGAAAATCCCTCCTTGGGCTAGACCAGATTCTGAGGAGCCCCCTCCTTGGGCCCAGAGTGAAGGAAAGAAAGACGAATCAAAAGAAGGATTTGAGGTTCCGTTTTATGTTTATCTACTTGCCTCGGCTGTGACTGCAATTGCTGCAATAGGTTCTGTTTTTGAGTATGCGAACGATAAGCCTGTCTTTGGAGTTTTGAACTCAGACAGCATATTTTATGCTCCAGTGCTTGGATTTTTCGCATTTACCGGCATTCCCACTTCTGCATTCCTATGGTTCAGATCTGTTCAGGCCGCTAACAAGGAAGCCGAGGAGCAAGACAAGAGGGATGGCTATCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.5

Weight (kDa)

6.9

Isoelectric Point (pI)

55.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 455
AciI CCGC 1 cut(s) 519
AclWI GGATC 2 cut(s) 104, 117
AfiI CCNNNNNNNGG 5 cut(s) 241, 273, 274, 413, 455
AgsI TTSAA 1 cut(s) 424
AhlI ACTAGT 1 cut(s) 116
AjnI CCWGG 1 cut(s) 105
AloI GAACNNNNNNTCC 2 cut(s) 306, 338
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 171
AlwI GGATC 2 cut(s) 104, 117
AlwNI CAGNNNCTG 1 cut(s) 257
AoxI GGCC 2 cut(s) 276, 516
ApaI GGGCCC 1 cut(s) 280
ApeKI GCWGC 2 cut(s) 5, 368
AspS9I GGNCC 2 cut(s) 276, 277
AsuHPI GGTGA 1 cut(s) 184
BaeGI GKGCMC 1 cut(s) 280
BamHI GGATCC 1 cut(s) 109
BanII GRGCYC 2 cut(s) 267, 280
BbvI GCAGC 1 cut(s) 355
BccI CCATC 1 cut(s) 548
BciT130I CCWGG 1 cut(s) 107
BcoDI GTCTC 1 cut(s) 171
BcuI ACTAGT 1 cut(s) 116
BfaI CTAG 2 cut(s) 117, 246
BglII AGATCT 1 cut(s) 506
BisI GCNGC 3 cut(s) 6, 369, 519
BlsI GCNGC 3 cut(s) 7, 370, 520
Bme1390I CCNGG 1 cut(s) 107
BmgT120I GGNCC 2 cut(s) 276, 277
BmiI GGNNCC 4 cut(s) 111, 264, 278, 324
BmrFI CCNGG 1 cut(s) 107
BplI GAGNNNNNCTC 2 cut(s) 151, 183
BpmI CTGGAG 1 cut(s) 432
Bsa29I ATCGAT 1 cut(s) 562
BsaBI GATNNNNATC 1 cut(s) 558
BsaJI CCNNGG 5 cut(s) 133, 239, 272, 348, 534
Bsc4I CCNNNNNNNGG 5 cut(s) 241, 273, 274, 413, 455
Bse118I RCCGGY 1 cut(s) 473
Bse1I ACTGG 1 cut(s) 449
Bse8I GATNNNNATC 1 cut(s) 558
BseBI CCWGG 1 cut(s) 107
BseCI ATCGAT 1 cut(s) 562
BseDI CCNNGG 5 cut(s) 133, 239, 272, 348, 534
BseGI GGATG 1 cut(s) 559
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 5 cut(s) 241, 273, 274, 413, 455
BseMII CTCAG 2 cut(s) 249, 441
BseNI ACTGG 1 cut(s) 449
BseRI GAGGAG 2 cut(s) 275, 551
BseSI GKGCMC 1 cut(s) 280
BseXI GCAGC 1 cut(s) 355
BshFI GGCC 2 cut(s) 278, 518
BshVI ATCGAT 1 cut(s) 562
BsiSI CCGG 1 cut(s) 474
BslI CCNNNNNNNGG 5 cut(s) 241, 273, 274, 413, 455
BsmAI GTCTC 1 cut(s) 171
BsmBI CGTCTC 1 cut(s) 171
BsmI GAATGC 2 cut(s) 477, 491
BsnI GGCC 2 cut(s) 278, 518
Bsp120I GGGCCC 1 cut(s) 276
Bsp1286I GDGCHC 2 cut(s) 267, 280
Bsp143I GATC 2 cut(s) 109, 506
BspACI CCGC 1 cut(s) 519
BspANI GGCC 2 cut(s) 278, 518
BspCNI CTCAG 2 cut(s) 250, 440
BspDI ATCGAT 1 cut(s) 562
BspLI GGNNCC 4 cut(s) 111, 264, 278, 324
BspPI GGATC 2 cut(s) 104, 117
BsrFI RCCGGY 1 cut(s) 473
BsrI ACTGG 1 cut(s) 449
BssAI RCCGGY 1 cut(s) 473
BssECI CCNNGG 5 cut(s) 133, 239, 272, 348, 534
BssMI GATC 2 cut(s) 109, 506
BssT1I CCWWGG 3 cut(s) 133, 239, 272
Bst2UI CCWGG 1 cut(s) 107
BstAPI GCANNNNNTGC 1 cut(s) 368
BstDEI CTNAG 2 cut(s) 258, 427
BstF5I GGATG 1 cut(s) 559
BstKTI GATC 2 cut(s) 112, 509
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 2 cut(s) 109, 506
BstMWI GCNNNNNNNGC 2 cut(s) 359, 368
BstNI CCWGG 1 cut(s) 107
BstNSI RCATGY 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 105
BstSLI GKGCMC 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 355
BstX2I RGATCY 2 cut(s) 109, 506
BstYI RGATCY 2 cut(s) 109, 506
Bsu15I ATCGAT 1 cut(s) 562
BsuRI GGCC 2 cut(s) 278, 518
BsuTUI ATCGAT 1 cut(s) 562
BtsCI GGATG 1 cut(s) 559
BtsIMutI CAGTG 1 cut(s) 456
CaiI CAGNNNCTG 1 cut(s) 257
Cfr10I RCCGGY 1 cut(s) 473
Cfr13I GGNCC 2 cut(s) 276, 277
ClaI ATCGAT 1 cut(s) 562
CviAII CATG 4 cut(s) 24, 44, 48, 85
DdeI CTNAG 2 cut(s) 258, 427
DpnI GATC 2 cut(s) 111, 508
DpnII GATC 2 cut(s) 109, 506
Eco130I CCWWGG 3 cut(s) 133, 239, 272
Eco24I GRGCYC 2 cut(s) 267, 280
EcoRII CCWGG 1 cut(s) 105
EcoT14I CCWWGG 3 cut(s) 133, 239, 272
EcoT22I ATGCAT 1 cut(s) 49
EcoT38I GRGCYC 2 cut(s) 267, 280
ErhI CCWWGG 3 cut(s) 133, 239, 272
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 4 cut(s) 27, 47, 51, 88
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FatI CATG 4 cut(s) 23, 43, 47, 84
Fnu4HI GCNGC 3 cut(s) 6, 369, 519
FriOI GRGCYC 2 cut(s) 267, 280
Fsp4HI GCNGC 3 cut(s) 6, 369, 519
FspBI CTAG 2 cut(s) 117, 246
GluI GCNGC 3 cut(s) 6, 369, 519
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 2 cut(s) 278, 518
HapII CCGG 1 cut(s) 474
Hin1II CATG 4 cut(s) 27, 47, 51, 88
HinfI GANTC 2 cut(s) 254, 302
HpaII CCGG 1 cut(s) 474
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 5 cut(s) 33, 223, 259, 430, 506
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 2 cut(s) 281, 305
HpyCH4V TGCA 8 cut(s) 8, 27, 47, 122, 206, 362, 371, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 368
HpyF3I CTNAG 2 cut(s) 258, 427
Hsp92II CATG 4 cut(s) 27, 47, 51, 88
Kzo9I GATC 2 cut(s) 109, 506
LmnI GCTCC 3 cut(s) 262, 451, 538
LpnPI CCDG 8 cut(s) 92, 119, 264, 293, 420, 462, 487, 500
Lsp1109I GCAGC 1 cut(s) 355
MaeI CTAG 2 cut(s) 117, 246
MaeIII GTNAC 2 cut(s) 190, 355
MalI GATC 2 cut(s) 111, 508
MboI GATC 2 cut(s) 109, 506
MfeI CAATTG 1 cut(s) 363
MflI RGATCY 2 cut(s) 109, 506
MhlI GDGCHC 2 cut(s) 267, 280
MluCI AATT 1 cut(s) 363
MmeI TCCRAC 3 cut(s) 73, 137, 246
MnlI CCTC 8 cut(s) 153, 246, 253, 279, 313, 358, 529, 543
Mph1103I ATGCAT 1 cut(s) 49
MslI CAYNNNNRTG 1 cut(s) 496
MspI CCGG 1 cut(s) 474
MspR9I CCNGG 1 cut(s) 107
MunI CAATTG 1 cut(s) 363
Mva1269I GAATGC 2 cut(s) 477, 491
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 359, 368
NdeII GATC 2 cut(s) 109, 506
NlaIII CATG 4 cut(s) 27, 47, 51, 88
NlaIV GGNNCC 4 cut(s) 111, 264, 278, 324
NmeAIII GCCGAG 2 cut(s) 329, 559
NmuCI GTSAC 2 cut(s) 190, 355
NsiI ATGCAT 1 cut(s) 49
NspI RCATGY 1 cut(s) 51
PctI GAATGC 2 cut(s) 477, 491
PfeI GAWTC 2 cut(s) 254, 302
PflMI CCANNNNNTGG 1 cut(s) 455
PfoI TCCNGGA 1 cut(s) 105
PkrI GCNGC 3 cut(s) 7, 370, 520
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 4 cut(s) 111, 264, 278, 324
PspOMI GGGCCC 1 cut(s) 276
PspPI GGNCC 2 cut(s) 276, 277
PstNI CAGNNNCTG 1 cut(s) 257
PsuI RGATCY 2 cut(s) 109, 506
RseI CAYNNNNRTG 1 cut(s) 496
SatI GCNGC 3 cut(s) 6, 369, 519
Sau3AI GATC 2 cut(s) 109, 506
Sau96I GGNCC 2 cut(s) 276, 277
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 2 cut(s) 267, 280
SetI ASST 5 cut(s) 149, 164, 202, 324, 379
SmiMI CAYNNNNRTG 1 cut(s) 496
SpeI ACTAGT 1 cut(s) 116
Sse9I AATT 1 cut(s) 363
SsiI CCGC 1 cut(s) 519
SspMI CTAG 2 cut(s) 117, 246
StyD4I CCNGG 1 cut(s) 105
StyI CCWWGG 3 cut(s) 133, 239, 272
TaqI TCGA 1 cut(s) 562
TasI AATT 1 cut(s) 363
TauI GCSGC 1 cut(s) 521
TfiI GAWTC 2 cut(s) 254, 302
TscAI CASTG 1 cut(s) 456
TseFI GTSAC 2 cut(s) 190, 355
TseI GCWGC 2 cut(s) 5, 368
Tsp45I GTSAC 2 cut(s) 190, 355
TspDTI ATGAA 2 cut(s) 12, 73
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 1 cut(s) 456
Van91I CCANNNNNTGG 1 cut(s) 455
XceI RCATGY 1 cut(s) 51
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XspI CTAG 2 cut(s) 117, 246
Zsp2I ATGCAT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.