Prupe.7G188400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0008426
Physical Location & Seq
Reverse (-)
18117467 .. 18120294
2828 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G188400.1

Sequence Viewer

Length: 567 bp
ATGGCTGCAACCTTATTGTTTGCATGCAACTCAAATGTAAACCATGGCTGTAGAAATGATAATCCCTCGCTGCCGAAACCATTCGTGGGTGGTGGACACAGAATCCTGGATCAAACCATTGCAAATAGGAACCAAAGCCATTATAACTCTCAAAAAAACAAGTCATCTCGCAGGTTTTCTGTTTCTGCTGTCACTGAAGGTTCCGCGAAATCAAGCAAGTCCGAAGAAAAAATCCCCCCTTGGGCTAGGCCAGATTCGGATGAGCCCCCTCCTTGGGCCCAGGGTGAAGGCAAGAATGATGGTTCACAGGAGGGATTTGAGATTCCCTTTTATGTTTATCTACTTGCCTCAGCCGTGACTGCAATTGCTGCTATAGGTTCTGTTTTTGAGTATGCGAACCAGAAGCCAGTCTTTGGACTCTTGAACTCGGACAGCATATTTTATGCTCCAGTGCTTGGATTTTTTGTATTTACAGGCATTCCCTCTGCTGCATTCCTGTGGTTCAAATCTGTCAAAGCTGCTAACAAGGAAGCTGAGGAGCAAGACAAGAGGGATGGCTATCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.58

Weight (kDa)

7.75

Isoelectric Point (pI)

54.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 144
Acc36I ACCTGC 1 cut(s) 162
AccB7I CCANNNNNTGG 2 cut(s) 413, 455
AccII CGCG 1 cut(s) 206
AciI CCGC 1 cut(s) 204
AclWI GGATC 1 cut(s) 117
AcuI CTGAAG 1 cut(s) 216
AfiI CCNNNNNNNGG 6 cut(s) 86, 241, 273, 274, 413, 455
AgsI TTSAA 2 cut(s) 424, 505
AjnI CCWGG 2 cut(s) 105, 279
AluBI AGCT 2 cut(s) 518, 533
AluI AGCT 2 cut(s) 518, 533
AlwI GGATC 1 cut(s) 117
AoxI GGCC 2 cut(s) 248, 276
ApaI GGGCCC 1 cut(s) 280
ApeKI GCWGC 5 cut(s) 5, 70, 368, 488, 518
Asp700I GAANNNNTTC 1 cut(s) 80
AspS9I GGNCC 2 cut(s) 276, 277
AsuHPI GGTGA 1 cut(s) 296
BaeGI GKGCMC 1 cut(s) 280
BanII GRGCYC 2 cut(s) 267, 280
BbvCI CCTCAGC 2 cut(s) 349, 534
BbvI GCAGC 4 cut(s) 57, 355, 475, 505
BccI CCATC 2 cut(s) 293, 548
BceAI ACGGC 1 cut(s) 338
BciT130I CCWGG 2 cut(s) 107, 281
BfaI CTAG 1 cut(s) 246
BfmI CTRYAG 2 cut(s) 49, 372
BfuAI ACCTGC 1 cut(s) 162
BisI GCNGC 5 cut(s) 6, 71, 369, 489, 519
BlsI GCNGC 5 cut(s) 7, 72, 370, 490, 520
Bme1390I CCNGG 2 cut(s) 107, 281
BmgT120I GGNCC 2 cut(s) 276, 277
BmiI GGNNCC 3 cut(s) 131, 202, 278
BmrFI CCNGG 2 cut(s) 107, 281
BpmI CTGGAG 1 cut(s) 432
Bpu10I CCTNAGC 2 cut(s) 349, 534
Bsa29I ATCGAT 1 cut(s) 562
BsaBI GATNNNNATC 1 cut(s) 558
BsaJI CCNNGG 5 cut(s) 43, 239, 272, 279, 280
Bsc4I CCNNNNNNNGG 6 cut(s) 86, 241, 273, 274, 413, 455
Bse1I ACTGG 2 cut(s) 407, 449
Bse3DI GCAATG 1 cut(s) 117
Bse8I GATNNNNATC 1 cut(s) 558
BseBI CCWGG 2 cut(s) 107, 281
BseCI ATCGAT 1 cut(s) 562
BseDI CCNNGG 5 cut(s) 43, 239, 272, 279, 280
BseGI GGATG 2 cut(s) 265, 559
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 6 cut(s) 86, 241, 273, 274, 413, 455
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 2 cut(s) 363, 525
BseNI ACTGG 2 cut(s) 407, 449
BseRI GAGGAG 1 cut(s) 551
BseSI GKGCMC 1 cut(s) 280
BseXI GCAGC 4 cut(s) 57, 355, 475, 505
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 2 cut(s) 250, 278
BshVI ATCGAT 1 cut(s) 562
BslI CCNNNNNNNGG 6 cut(s) 86, 241, 273, 274, 413, 455
BsmI GAATGC 2 cut(s) 477, 491
BsnI GGCC 2 cut(s) 250, 278
Bsp120I GGGCCC 1 cut(s) 276
Bsp1286I GDGCHC 2 cut(s) 267, 280
Bsp143I GATC 1 cut(s) 109
Bsp19I CCATGG 1 cut(s) 43
BspACI CCGC 1 cut(s) 204
BspANI GGCC 2 cut(s) 250, 278
BspCNI CTCAG 2 cut(s) 362, 526
BspDI ATCGAT 1 cut(s) 562
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 3 cut(s) 131, 202, 278
BspMI ACCTGC 1 cut(s) 162
BspPI GGATC 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 117
BsrI ACTGG 2 cut(s) 407, 449
BssECI CCNNGG 5 cut(s) 43, 239, 272, 279, 280
BssMI GATC 1 cut(s) 109
BssT1I CCWWGG 3 cut(s) 43, 239, 272
Bst2UI CCWGG 2 cut(s) 107, 281
BstAPI GCANNNNNTGC 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 2 cut(s) 349, 534
BstDSI CCRYGG 1 cut(s) 43
BstF5I GGATG 2 cut(s) 265, 559
BstFNI CGCG 1 cut(s) 206
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 2 cut(s) 359, 368
BstNI CCWGG 2 cut(s) 107, 281
BstNSI RCATGY 1 cut(s) 27
BstSCI CCNGG 2 cut(s) 105, 279
BstSFI CTRYAG 2 cut(s) 49, 372
BstSLI GKGCMC 1 cut(s) 280
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 4 cut(s) 57, 355, 475, 505
Bsu15I ATCGAT 1 cut(s) 562
BsuRI GGCC 2 cut(s) 250, 278
BsuTUI ATCGAT 1 cut(s) 562
BtgI CCRYGG 1 cut(s) 43
BtsCI GGATG 2 cut(s) 265, 559
BtsIMutI CAGTG 2 cut(s) 192, 456
BveI ACCTGC 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 276, 277
ClaI ATCGAT 1 cut(s) 562
CviAII CATG 2 cut(s) 24, 44
DdeI CTNAG 2 cut(s) 349, 534
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eco130I CCWWGG 3 cut(s) 43, 239, 272
Eco24I GRGCYC 2 cut(s) 267, 280
Eco57I CTGAAG 1 cut(s) 216
EcoRII CCWGG 2 cut(s) 105, 279
EcoT14I CCWWGG 3 cut(s) 43, 239, 272
EcoT38I GRGCYC 2 cut(s) 267, 280
ErhI CCWWGG 3 cut(s) 43, 239, 272
FaeI CATG 2 cut(s) 27, 47
FaiI YATR 8 cut(s) 25, 45, 144, 333, 374, 393, 437, 444
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FatI CATG 2 cut(s) 23, 43
Fnu4HI GCNGC 5 cut(s) 6, 71, 369, 489, 519
FokI GGATG 1 cut(s) 272
FriOI GRGCYC 2 cut(s) 267, 280
Fsp4HI GCNGC 5 cut(s) 6, 71, 369, 489, 519
FspBI CTAG 1 cut(s) 246
GluI GCNGC 5 cut(s) 6, 71, 369, 489, 519
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 2 cut(s) 250, 278
Hin1II CATG 2 cut(s) 27, 47
HinfI GANTC 4 cut(s) 102, 254, 322, 417
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 3 cut(s) 40, 95, 305
Hpy188I TCNGA 3 cut(s) 223, 259, 430
Hpy188III TCNNGA 1 cut(s) 421
Hpy8I GTNNAC 3 cut(s) 40, 95, 305
HpyAV CCTTC 2 cut(s) 191, 281
HpyCH4V TGCA 6 cut(s) 8, 23, 27, 122, 362, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 368
HpyF3I CTNAG 2 cut(s) 349, 534
Hsp92II CATG 2 cut(s) 27, 47
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 2 cut(s) 451, 538
Lsp1109I GCAGC 4 cut(s) 57, 355, 475, 505
MaeI CTAG 1 cut(s) 246
MaeIII GTNAC 2 cut(s) 190, 355
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 1 cut(s) 236
MfeI CAATTG 1 cut(s) 363
MhlI GDGCHC 2 cut(s) 267, 280
MluCI AATT 1 cut(s) 363
MlyI GAGTC 1 cut(s) 411
MnlI CCTC 7 cut(s) 76, 279, 304, 358, 493, 529, 543
MroXI GAANNNNTTC 1 cut(s) 80
MslI CAYNNNNRTG 1 cut(s) 496
MspR9I CCNGG 2 cut(s) 107, 281
MunI CAATTG 1 cut(s) 363
Mva1269I GAATGC 2 cut(s) 477, 491
MvaI CCWGG 2 cut(s) 107, 281
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 359, 368
NcoI CCATGG 1 cut(s) 43
NdeII GATC 1 cut(s) 109
NlaIII CATG 2 cut(s) 27, 47
NlaIV GGNNCC 3 cut(s) 131, 202, 278
NmuCI GTSAC 2 cut(s) 190, 355
NspI RCATGY 1 cut(s) 27
PaeI GCATGC 1 cut(s) 27
PasI CCCWGGG 1 cut(s) 280
PctI GAATGC 2 cut(s) 477, 491
PdmI GAANNNNTTC 1 cut(s) 80
PfeI GAWTC 3 cut(s) 102, 254, 322
PflMI CCANNNNNTGG 2 cut(s) 413, 455
PfoI TCCNGGA 1 cut(s) 105
PkrI GCNGC 5 cut(s) 7, 72, 370, 490, 520
PleI GAGTC 1 cut(s) 411
PpsI GAGTC 1 cut(s) 411
PsiI TTATAA 1 cut(s) 144
Psp6I CCWGG 2 cut(s) 105, 279
PspGI CCWGG 2 cut(s) 105, 279
PspN4I GGNNCC 3 cut(s) 131, 202, 278
PspOMI GGGCCC 1 cut(s) 276
PspPI GGNCC 2 cut(s) 276, 277
RseI CAYNNNNRTG 1 cut(s) 496
SatI GCNGC 5 cut(s) 6, 71, 369, 489, 519
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 2 cut(s) 276, 277
SchI GAGTC 1 cut(s) 411
ScrFI CCNGG 2 cut(s) 107, 281
SduI GDGCHC 2 cut(s) 267, 280
SetI ASST 6 cut(s) 14, 176, 202, 379, 520, 535
SfcI CTRYAG 2 cut(s) 49, 372
SmiMI CAYNNNNRTG 1 cut(s) 496
SphI GCATGC 1 cut(s) 27
Sse9I AATT 1 cut(s) 363
SsiI CCGC 1 cut(s) 204
SspMI CTAG 1 cut(s) 246
StyD4I CCNGG 2 cut(s) 105, 279
StyI CCWWGG 3 cut(s) 43, 239, 272
TaqI TCGA 1 cut(s) 562
TasI AATT 1 cut(s) 363
TfiI GAWTC 3 cut(s) 102, 254, 322
TscAI CASTG 2 cut(s) 199, 456
TseFI GTSAC 2 cut(s) 190, 355
TseI GCWGC 5 cut(s) 5, 70, 368, 488, 518
Tsp45I GTSAC 2 cut(s) 190, 355
TspRI CASTG 2 cut(s) 199, 456
Van91I CCANNNNNTGG 2 cut(s) 413, 455
XceI RCATGY 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 80
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.