Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008426

Physical Location & Seq

Genomic Coordinates Forward (+)

18447233 .. 18449644

Gene Structure 2412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1226900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCTGCAAGCTTCTTGTTTGCGTGCAATTTTAATGTAAACCATGGCTGTATGAATGATAATCCGTTACCCAAACTGTTCTTGGGTGCTGGACACAGAATCCGGGATCAAACGCTTTCAAATAGAAATCAAACCCATCAATGCTTTCTAACAAGGAAGTCCTCTCGTAGGTTTTCCGTTTCTGCTGTCACCAAAGGTTCCGCGAAATCAAGCAAGTCTGATGAGAAAATCCCCTCGTGGGCTAAACCGGATTCAGACGAGCCTCCTCCTTGGGCACAGAATGAAGGCAAGAAAGATGATGCACAAGAGGGATTTGAGGTTCCCTTTTTTGTTTATCTACTCGCCTCAGCGATCACTGCAATTGCCGCAATAGGTTCTGTTTTTGAGTATGTGAACGAAAGGCCAGTCTTCGGAATCTTGGGTTCAGACAGCATATTTTATGCTCCAGTCCTTGGATTTTTTGCATTTACTGGCATTCCCACTTCTGTAAGCATTCCTGTGGTTCAAATCTGTTCAAACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.0

Weight (kDa)

7.64

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51510
fragaria_vesca	FvH4_1g09790 FvH4_1g09790 FvH4_1g09790 FvH4_1g09790
malus_domestica	MD02G1107600.v1.1 MD15G1226900.v1.1
prunus_persica	Prupe.7G188400_v2.0.a1 Prupe.7G188400_v2.0.a1 Prupe.7G188400_v2.0.a1 Prupe.7G188400_v2.0.a1
pyrus_communis	pycom02g08620 pycom15g20180
rosa_chinensis	RchiOBHm_Chr2g0096661
rosa_laevigata	RLG00000016659
rosa_roxburghii	Rroxscaffold_2G00145440
rosa_rugosa	Rorug02G0059300 Rorug02G0059400
rosa_samantha	Rh2AG106800 Rh2BG109200 Rh2CG111000 Rh2DG110600
rosa_wichuraiana	Rw2G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	452
AccII	CGCG	1 cut(s)	203
AciI	CCGC	2 cut(s)	201, 366
AclWI	GGATC	1 cut(s)	114
AfiI	CCNNNNNNNGG	4 cut(s)	168, 238, 410, 452
AgsI	TTSAA	3 cut(s)	120, 506, 516
AloI	GAACNNNNNNTCC	2 cut(s)	303, 335
AluBI	AGCT	1 cut(s)	12
AluI	AGCT	1 cut(s)	12
AlwI	GGATC	1 cut(s)	114
AoxI	GGCC	1 cut(s)	401
ApeKI	GCWGC	1 cut(s)	5
ArsI	GACNNNNNNTTYG	2 cut(s)	390, 422
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	277
BauI	CACGAG	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	400
BbvCI	CCTCAGC	1 cut(s)	346
BccI	CCATC	1 cut(s)	144
BcnI	CCSGG	1 cut(s)	104
BisI	GCNGC	2 cut(s)	6, 366
BlsI	GCNGC	2 cut(s)	7, 367
Bme1390I	CCNGG	1 cut(s)	104
BmiI	GGNNCC	2 cut(s)	199, 321
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	400
BpmI	CTGGAG	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	346
BpuMI	CCSGG	1 cut(s)	104
BsaJI	CCNNGG	3 cut(s)	43, 269, 451
BsaWI	WCCGGW	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	4 cut(s)	168, 238, 410, 452
Bse1I	ACTGG	3 cut(s)	404, 446, 475
BseDI	CCNNGG	3 cut(s)	43, 269, 451
BseLI	CCNNNNNNNGG	4 cut(s)	168, 238, 410, 452
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	3 cut(s)	404, 446, 475
BseRI	GAGGAG	1 cut(s)	255
BseSI	GKGCMC	1 cut(s)	277
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	403
BsiSI	CCGG	2 cut(s)	103, 248
BslI	CCNNNNNNNGG	4 cut(s)	168, 238, 410, 452
BsmI	GAATGC	2 cut(s)	474, 492
BsnI	GGCC	1 cut(s)	403
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	106, 351
Bsp19I	CCATGG	1 cut(s)	43
BspACI	CCGC	2 cut(s)	201, 366
BspANI	GGCC	1 cut(s)	403
BspCNI	CTCAG	1 cut(s)	359
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	2 cut(s)	199, 321
BspPI	GGATC	1 cut(s)	114
BsrI	ACTGG	3 cut(s)	404, 446, 475
BssECI	CCNNGG	3 cut(s)	43, 269, 451
BssMI	GATC	2 cut(s)	106, 351
BssSI	CACGAG	1 cut(s)	235
BssT1I	CCWWGG	3 cut(s)	43, 269, 451
Bst2BI	CACGAG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	78
BstC8I	GCNNGC	2 cut(s)	10, 25
BstDEI	CTNAG	1 cut(s)	346
BstDSI	CCRYGG	1 cut(s)	43
BstENI	CCTNNNNNAGG	1 cut(s)	166
BstFNI	CGCG	1 cut(s)	203
BstKTI	GATC	2 cut(s)	109, 354
BstMBI	GATC	2 cut(s)	106, 351
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 365
BstSCI	CCNGG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	277
BstUI	CGCG	1 cut(s)	203
BstV2I	GAAGAC	1 cut(s)	400
BsuRI	GGCC	1 cut(s)	403
BtgI	CCRYGG	1 cut(s)	43
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	2 cut(s)	10, 25
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	6 cut(s)	5, 12, 48, 242, 262, 403
CviKI_1	RGCY	6 cut(s)	5, 12, 48, 242, 262, 403
DdeI	CTNAG	1 cut(s)	346
DpnI	GATC	2 cut(s)	108, 353
DpnII	GATC	2 cut(s)	106, 351
Eco130I	CCWWGG	3 cut(s)	43, 269, 451
EcoNI	CCTNNNNNAGG	1 cut(s)	166
EcoT14I	CCWWGG	3 cut(s)	43, 269, 451
ErhI	CCWWGG	3 cut(s)	43, 269, 451
FaeI	CATG	1 cut(s)	47
FaiI	YATR	5 cut(s)	45, 53, 390, 434, 441
FatI	CATG	1 cut(s)	43
Fnu4HI	GCNGC	2 cut(s)	6, 366
Fsp4HI	GCNGC	2 cut(s)	6, 366
GluI	GCNGC	2 cut(s)	6, 366
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	403
HapII	CCGG	2 cut(s)	103, 248
Hin1II	CATG	1 cut(s)	47
HindIII	AAGCTT	1 cut(s)	10
HinfI	GANTC	3 cut(s)	99, 251, 414
HpaII	CCGG	2 cut(s)	103, 248
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	40, 394
Hpy188I	TCNGA	4 cut(s)	220, 256, 413, 427
Hpy8I	GTNNAC	2 cut(s)	40, 394
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4V	TGCA	5 cut(s)	8, 27, 302, 359, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 365
HpyF3I	CTNAG	1 cut(s)	346
Hsp92II	CATG	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	106, 351
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	7 cut(s)	75, 116, 261, 417, 456, 459, 510
LweI	GCATC	1 cut(s)	289
MaeIII	GTNAC	2 cut(s)	66, 187
MalI	GATC	2 cut(s)	108, 353
MboI	GATC	2 cut(s)	106, 351
MboII	GAAGA	1 cut(s)	400
MfeI	CAATTG	1 cut(s)	360
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	2 cut(s)	28, 360
MnlI	CCTC	7 cut(s)	172, 244, 273, 276, 301, 310, 355
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	497
MspI	CCGG	2 cut(s)	103, 248
MspR9I	CCNGG	1 cut(s)	104
MunI	CAATTG	1 cut(s)	360
Mva1269I	GAATGC	2 cut(s)	474, 492
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	356, 365
NciI	CCSGG	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	43
NdeII	GATC	2 cut(s)	106, 351
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	2 cut(s)	199, 321
NmuCI	GTSAC	1 cut(s)	187
PctI	GAATGC	2 cut(s)	474, 492
PfeI	GAWTC	3 cut(s)	99, 251, 414
PflMI	CCANNNNNTGG	1 cut(s)	452
PfoI	TCCNGGA	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	7, 367
PspN4I	GGNNCC	2 cut(s)	199, 321
RseI	CAYNNNNRTG	1 cut(s)	497
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	2 cut(s)	6, 366
Sau3AI	GATC	2 cut(s)	106, 351
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	5 cut(s)	14, 173, 199, 321, 376
SfaNI	GCATC	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	497
Sse9I	AATT	2 cut(s)	28, 360
SsiI	CCGC	2 cut(s)	201, 366
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	3 cut(s)	43, 269, 451
TaaI	ACNGT	1 cut(s)	78
TasI	AATT	2 cut(s)	28, 360
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	3 cut(s)	99, 251, 414
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	68, 297
TspGWI	ACGGA	2 cut(s)	54, 166
TspRI	CASTG	1 cut(s)	361
Van91I	CCANNNNNTGG	1 cut(s)	452
XagI	CCTNNNNNAGG	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.