Rorug02G0059400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008426
Physical Location & Seq
Reverse (-)
4576607 .. 4577875
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0059400.1

Sequence Viewer

Length: 1269 bp
ATGTTTCGTTCGAGCTTGATTGTTTTGCTTCTCTTTATTTCTGTGCCATTCATGGATGCTGAAACACAATCTGTAGGCGGTTATGATTCTGAAACAGATCAATCTAATTTTCAACCAAGTGTTGCTGTGGTTATAGGTATTTTAGCCCTCATGTTTGCTCTGACTTTTGTTCTCTTAGTGTATGCCAAGTTCTGCCATAGAAGAGTTTCTGTTCATGGCAACCATCACTTGGAAGGGGGGCGTATCGGCACAAGCTCTCGGTTTTCTGGTATTGACAAGACAGTGATTGAGGCACTTCCCTTTTTCAGATTCTCTAATCTTAAAGGGTCAAAGGAAGGGCTAGAATGTGCAGTCTGCCTGTCAAAATTTGAAGACATCGAAGTCCTCAGATTGCTTCCCAAGTGCAAGCATGCTTTCCACATTGATTGCATCGATCACTGGCTTGAGAAGCACTCCAGCTGTCCTCTTTGCAGGCACAAGGTCAGTTCTGAGGACCTCACGTTCATTGCATACTCCAACAGTATGAGAGTCTTGTGGGATAGCCAATCAGAGCGGCGAGAAGACTCAAACATTGAGCTCTTTGTTCAGAGAGAGGAAGACCACTGCGGCTCTTCAAGGTTCAGTGTGGGAAGTAGCTTTCGGAAAATGGAGAAGGGCGTTGATAAAGGAGAGGAACTGTTGATCCAAGAAGAAGCTGGGATTCTCAAGGAGGATGATGATGATGACAAGGTCCTGCACAAACACAAGCACAAAATTGTTGTGTCTGATTTTGTGTTCCAGAACAGATGGAGTAATCTGAGTTCCTCGGACCTCATTTTCTTGAACTCGGAGATGCTTAATACAATGTCAAGCAGTAGATTCTCCACATCAGCTCGTTTAAACAATGAGCAGTTTTCGCCGAGGGAAGCTACAGGAAATGATGAGATTATGAAGATTAGGGAGGAGATGGAGATGAAGAGATTGTTCGAAAACAAAGTCAGCAGCACAATGAACAAAAACAGTACTACTTTTGCAGCTTCAACCCTACCAACTCATGCCTCGAGTTCTATGAATCAAGGTGAGAAGAGATCAATGTCAGAAATCACTGCTCTTTCGAGATTTGGAAACTGGGGTATCAAGAACAGAACCAAAGAGCCTTCATTGCTTGGTAACAATGTGAAAGAGGAAAGAATGAGGCGGCTTTGGTTGCCGATTGCCAGAAGAACAGTCCAGTGGTTTGCCAATAGAGAGAAAAGGTCTGAACAGCCTCAACATTCTTCAAATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

422

Amino Acids

48.25

Weight (kDa)

7.25

Isoelectric Point (pI)

65.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 115 - 158 7e-13 Ring finger domain
zf-RING_11 PF17123 115 - 144 4.2e-09 RING-like zinc finger
zf-C3HC4_2 PF13923 115 - 157 1.9e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 116 - 157 2.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 118 - 158 2e-08 RING-H2 zinc finger domain
zf-ANAPC11 PF12861 131 - 161 7.5e-06 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 380
AccB7I CCANNNNNTGG 1 cut(s) 229
AccBSI CCGCTC 1 cut(s) 553
AciI CCGC 4 cut(s) 78, 553, 606, 1177
AclWI GGATC 1 cut(s) 676
AcsI RAATTY 1 cut(s) 365
AfaI GTAC 1 cut(s) 1003
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 6 cut(s) 113, 371, 615, 823, 1020, 1260
AloI GAACNNNNNNTCC 4 cut(s) 485, 517, 666, 698
AluBI AGCT 9 cut(s) 15, 255, 459, 577, 636, 695, 872, 908, 1016
AluI AGCT 9 cut(s) 15, 255, 459, 577, 636, 695, 872, 908, 1016
Alw21I GWGCWC 1 cut(s) 579
AlwI GGATC 1 cut(s) 676
Ama87I CYCGRG 1 cut(s) 1039
ApeKI GCWGC 2 cut(s) 981, 1013
ApoI RAATTY 1 cut(s) 365
ArsI GACNNNNNNTTYG 2 cut(s) 960, 992
Asp700I GAANNNNTTC 1 cut(s) 205
AspS9I GGNCC 3 cut(s) 493, 730, 808
AsuHPI GGTGA 1 cut(s) 1070
AsuII TTCGAA 1 cut(s) 966
AvaI CYCGRG 1 cut(s) 1039
AvaII GGWCC 3 cut(s) 493, 730, 808
BaeI ACNNNNGTAYC 2 cut(s) 1096, 1129
BanII GRGCYC 1 cut(s) 579
BbsI GAAGAC 3 cut(s) 378, 567, 603
Bbv12I GWGCWC 1 cut(s) 579
BbvI GCAGC 2 cut(s) 993, 1025
BccI CCATC 3 cut(s) 231, 780, 940
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 2 cut(s) 72, 909
BisI GCNGC 5 cut(s) 554, 607, 982, 1014, 1178
BlsI GCNGC 5 cut(s) 555, 608, 983, 1015, 1179
BmcAI AGTACT 1 cut(s) 1003
Bme18I GGWCC 3 cut(s) 493, 730, 808
BmeT110I CYCGRG 1 cut(s) 1039
BmgT120I GGNCC 3 cut(s) 493, 730, 808
BmrI ACTGGG 1 cut(s) 1117
BmsI GCATC 3 cut(s) 46, 438, 822
BmuI ACTGGG 1 cut(s) 1117
BpiI GAAGAC 3 cut(s) 378, 567, 603
BplI GAGNNNNNCTC 2 cut(s) 437, 469
BpmI CTGGAG 1 cut(s) 439
Bpu14I TTCGAA 1 cut(s) 966
BpuEI CTTGAG 2 cut(s) 464, 689
Bsa29I ATCGAT 1 cut(s) 432
BsaJI CCNNGG 2 cut(s) 804, 899
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 3 cut(s) 443, 1112, 1210
Bse3DI GCAATG 2 cut(s) 504, 1139
BseCI ATCGAT 1 cut(s) 432
BseDI CCNNGG 2 cut(s) 804, 899
BseGI GGATG 2 cut(s) 61, 718
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMI GCAATG 2 cut(s) 504, 1139
BseMII CTCAG 3 cut(s) 400, 480, 788
BseNI ACTGG 3 cut(s) 443, 1112, 1210
BseRI GAGGAG 1 cut(s) 956
BseXI GCAGC 2 cut(s) 993, 1025
BseYI CCCAGC 1 cut(s) 695
BsgI GTGCAG 2 cut(s) 369, 719
BshVI ATCGAT 1 cut(s) 432
BsiHKAI GWGCWC 1 cut(s) 579
BsiHKCI CYCGRG 1 cut(s) 1039
BslI CCNNNNNNNGG 1 cut(s) 229
BsoBI CYCGRG 1 cut(s) 1039
Bsp119I TTCGAA 1 cut(s) 966
Bsp1286I GDGCHC 1 cut(s) 579
Bsp143I GATC 4 cut(s) 97, 433, 681, 1067
BspACI CCGC 4 cut(s) 78, 553, 606, 1177
BspCNI CTCAG 3 cut(s) 399, 481, 789
BspDI ATCGAT 1 cut(s) 432
BspPI GGATC 1 cut(s) 676
BspQI GCTCTTC 1 cut(s) 616
BspT104I TTCGAA 1 cut(s) 966
BsrBI CCGCTC 1 cut(s) 553
BsrDI GCAATG 2 cut(s) 504, 1139
BsrI ACTGG 3 cut(s) 443, 1112, 1210
BssECI CCNNGG 2 cut(s) 804, 899
BssMI GATC 4 cut(s) 97, 433, 681, 1067
Bst4CI ACNGT 5 cut(s) 283, 521, 678, 1001, 1207
Bst6I CTCTTC 4 cut(s) 196, 616, 950, 1058
BstBI TTCGAA 1 cut(s) 966
BstC8I GCNNGC 3 cut(s) 407, 411, 473
BstDEI CTNAG 4 cut(s) 175, 386, 489, 797
BstF5I GGATG 2 cut(s) 61, 718
BstKTI GATC 4 cut(s) 100, 436, 684, 1070
BstMBI GATC 4 cut(s) 97, 433, 681, 1067
BstMWI GCNNNNNNNGC 4 cut(s) 448, 895, 1141, 1186
BstNSI RCATGY 1 cut(s) 413
BstSFI CTRYAG 2 cut(s) 72, 909
BstV1I GCAGC 2 cut(s) 993, 1025
BstV2I GAAGAC 3 cut(s) 378, 567, 603
Bsu15I ATCGAT 1 cut(s) 432
BsuTUI ATCGAT 1 cut(s) 432
BtsCI GGATG 2 cut(s) 61, 718
BtsI GCAGTG 2 cut(s) 601, 1083
BtsIMutI CAGTG 6 cut(s) 288, 436, 601, 628, 1083, 1217
Cac8I GCNNGC 3 cut(s) 407, 411, 473
Cfr13I GGNCC 3 cut(s) 493, 730, 808
ClaI ATCGAT 1 cut(s) 432
Csp6I GTAC 1 cut(s) 1002
CspCI CAANNNNNGTGG 2 cut(s) 407, 442
CviAII CATG 5 cut(s) 52, 151, 215, 410, 1034
CviQI GTAC 1 cut(s) 1002
DdeI CTNAG 4 cut(s) 175, 386, 489, 797
DpnI GATC 4 cut(s) 99, 435, 683, 1069
DpnII GATC 4 cut(s) 97, 433, 681, 1067
DraI TTTAAA 1 cut(s) 879
DrdI GACNNNNNNGTC 1 cut(s) 380
DseDI GACNNNNNNGTC 1 cut(s) 380
Eam1104I CTCTTC 4 cut(s) 196, 616, 950, 1058
EarI CTCTTC 4 cut(s) 196, 616, 950, 1058
Ecl136II GAGCTC 1 cut(s) 577
Eco24I GRGCYC 1 cut(s) 579
Eco47I GGWCC 3 cut(s) 493, 730, 808
Eco53kI GAGCTC 1 cut(s) 577
Eco88I CYCGRG 1 cut(s) 1039
EcoICRI GAGCTC 1 cut(s) 577
EcoO109I RGGNCCY 2 cut(s) 493, 730
EcoT38I GRGCYC 1 cut(s) 579
FaeI CATG 5 cut(s) 55, 154, 218, 413, 1037
FatI CATG 5 cut(s) 51, 150, 214, 409, 1033
Fnu4HI GCNGC 5 cut(s) 554, 607, 982, 1014, 1178
FokI GGATG 2 cut(s) 68, 725
FriOI GRGCYC 1 cut(s) 579
Fsp4HI GCNGC 5 cut(s) 554, 607, 982, 1014, 1178
FspBI CTAG 1 cut(s) 341
GluI GCNGC 5 cut(s) 554, 607, 982, 1014, 1178
GsaI CCCAGC 1 cut(s) 699
GsuI CTGGAG 1 cut(s) 439
Hin1II CATG 5 cut(s) 55, 154, 218, 413, 1037
HinfI GANTC 7 cut(s) 86, 309, 528, 563, 700, 858, 1051
HphI GGTGA 1 cut(s) 1070
Hpy188III TCNNGA 4 cut(s) 778, 820, 1095, 1117
HpyAV CCTTC 4 cut(s) 227, 329, 646, 1146
HpyCH4III ACNGT 5 cut(s) 283, 521, 678, 1001, 1207
HpyCH4IV ACGT 1 cut(s) 500
HpyCH4V TGCA 7 cut(s) 350, 405, 429, 471, 509, 736, 1013
HpyF10VI GCNNNNNNNGC 4 cut(s) 448, 895, 1141, 1186
HpyF3I CTNAG 4 cut(s) 175, 386, 489, 797
HpySE526I ACGT 1 cut(s) 500
Hsp92II CATG 5 cut(s) 55, 154, 218, 413, 1037
Kzo9I GATC 4 cut(s) 97, 433, 681, 1067
LguI GCTCTTC 1 cut(s) 616
Lsp1109I GCAGC 2 cut(s) 993, 1025
LweI GCATC 3 cut(s) 46, 438, 822
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 500
MaeIII GTNAC 1 cut(s) 1148
MalI GATC 4 cut(s) 99, 435, 683, 1069
MbiI CCGCTC 1 cut(s) 553
MboI GATC 4 cut(s) 97, 433, 681, 1067
MhlI GDGCHC 1 cut(s) 579
MluCI AATT 3 cut(s) 106, 365, 753
MlyI GAGTC 2 cut(s) 537, 557
MmeI TCCRAC 1 cut(s) 540
MroXI GAANNNNTTC 1 cut(s) 205
MseI TTAA 3 cut(s) 321, 837, 878
MspA1I CMGCKG 1 cut(s) 459
MssI GTTTAAAC 1 cut(s) 879
MwoI GCNNNNNNNGC 4 cut(s) 448, 895, 1141, 1186
NdeII GATC 4 cut(s) 97, 433, 681, 1067
NlaIII CATG 5 cut(s) 55, 154, 218, 413, 1037
NmeAIII GCCGAG 1 cut(s) 924
NspI RCATGY 1 cut(s) 413
NspV TTCGAA 1 cut(s) 966
PaeI GCATGC 1 cut(s) 413
PaeR7I CTCGAG 1 cut(s) 1039
PciSI GCTCTTC 1 cut(s) 616
PdmI GAANNNNTTC 1 cut(s) 205
PfeI GAWTC 5 cut(s) 86, 309, 700, 858, 1051
PflFI GACNNNGTC 1 cut(s) 728
PflMI CCANNNNNTGG 1 cut(s) 229
PkrI GCNGC 5 cut(s) 555, 608, 983, 1015, 1179
PleI GAGTC 2 cut(s) 536, 557
PmeI GTTTAAAC 1 cut(s) 879
PpsI GAGTC 2 cut(s) 536, 557
PpuMI RGGWCCY 2 cut(s) 493, 730
Psp124BI GAGCTC 1 cut(s) 579
Psp5II RGGWCCY 2 cut(s) 493, 730
PspFI CCCAGC 1 cut(s) 695
PspPI GGNCC 3 cut(s) 493, 730, 808
PspPPI RGGWCCY 2 cut(s) 493, 730
PspXI VCTCGAGB 1 cut(s) 1039
PsrI GAACNNNNNNTAC 4 cut(s) 173, 205, 784, 816
PsyI GACNNNGTC 1 cut(s) 728
PvuII CAGCTG 1 cut(s) 459
RsaI GTAC 1 cut(s) 1003
RsaNI GTAC 1 cut(s) 1002
SacI GAGCTC 1 cut(s) 579
SapI GCTCTTC 1 cut(s) 616
SaqAI TTAA 3 cut(s) 321, 837, 878
SatI GCNGC 5 cut(s) 554, 607, 982, 1014, 1178
Sau3AI GATC 4 cut(s) 97, 433, 681, 1067
Sau96I GGNCC 3 cut(s) 493, 730, 808
ScaI AGTACT 1 cut(s) 1003
SchI GAGTC 2 cut(s) 537, 557
SduI GDGCHC 1 cut(s) 579
SfaNI GCATC 3 cut(s) 46, 438, 822
SfcI CTRYAG 2 cut(s) 72, 909
Sfr274I CTCGAG 1 cut(s) 1039
SfuI TTCGAA 1 cut(s) 966
SinI GGWCC 3 cut(s) 493, 730, 808
SlaI CTCGAG 1 cut(s) 1039
SmlI CTYRAG 3 cut(s) 443, 704, 1039
SmoI CTYRAG 3 cut(s) 443, 704, 1039
SphI GCATGC 1 cut(s) 413
Sse9I AATT 3 cut(s) 106, 365, 753
SsiI CCGC 4 cut(s) 78, 553, 606, 1177
SspMI CTAG 1 cut(s) 341
SstI GAGCTC 1 cut(s) 579
TaaI ACNGT 5 cut(s) 283, 521, 678, 1001, 1207
TaiI ACGT 1 cut(s) 503
TaqI TCGA 6 cut(s) 11, 378, 432, 966, 1040, 1094
TasI AATT 3 cut(s) 106, 365, 753
TatI WGTACW 1 cut(s) 1001
TauI GCSGC 3 cut(s) 556, 609, 1180
TfiI GAWTC 5 cut(s) 86, 309, 700, 858, 1051
Tru1I TTAA 3 cut(s) 321, 837, 878
Tru9I TTAA 3 cut(s) 321, 837, 878
TscAI CASTG 6 cut(s) 288, 443, 608, 628, 1090, 1217
TseI GCWGC 2 cut(s) 981, 1013
TspDTI ATGAA 8 cut(s) 40, 203, 493, 944, 968, 1004, 1064, 1128
TspRI CASTG 6 cut(s) 288, 443, 608, 628, 1090, 1217
Tth111I GACNNNGTC 1 cut(s) 728
Van91I CCANNNNNTGG 1 cut(s) 229
VpaK11BI GGWCC 3 cut(s) 493, 730, 808
XapI RAATTY 1 cut(s) 365
XceI RCATGY 1 cut(s) 413
XcmI CCANNNNNNNNNTGG 1 cut(s) 692
XhoI CTCGAG 1 cut(s) 1039
XmnI GAANNNNTTC 1 cut(s) 205
XspI CTAG 1 cut(s) 341
ZrmI AGTACT 1 cut(s) 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.