Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008426

Physical Location & Seq

Genomic Coordinates Reverse (-)

5316868 .. 5319847

Gene Structure 2980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCTGCAACATTGTTGGTTTCATGCAATCCAAATGTAAACCATGCATGCAGAAATGATAATCCACCATTACCGAAATCTTTCATGGGTGTTGGACACAAAATCCTGGAAACTAGTGCAAGTATAAACCAAGGCCTTTATAGGTCTCAAACCAAGAGGTCGTCTTATCGGTTTTCTGTTTCTGCTGTCACCAAAGGTTCTGCAAAGTCAAGCAAGTCTGATGAGAAAATTCCCCCTTGGGCTAGACCAGATTCTGAGGAGCCCCCTCCTTGGGCCCAGAGCGAAGGAAAGAAAGATGATTTAGAACAAGGATTTGAGGTTCCATTTTATGTTTATCTACTTGCCTCGGCTGTGACTGCAATTGCTGCAATAGGTTCTGTTTTTGAGTATGTGAACGATAAGCCTGTCTTTGGAGTTTTGTACTCAGACAGCATATTTTATGCTCCAGTGCTTGGATTTTTCGCATTTACCGGCATTCCCACTTCTGCATTCCTGTGGTTCAAATCTGTTCAGGCGGCTAACAAGGAAGCTGAGGAGCAAGACAAGAGGGATGGCTATCGGGTAGATCTTCTGCAAGACACACAACCAATAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

21.84

Weight (kDa)

6.14

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51510
fragaria_vesca	FvH4_1g09790 FvH4_1g09790 FvH4_1g09790 FvH4_1g09790
malus_domestica	MD02G1107600.v1.1 MD15G1226900.v1.1
prunus_persica	Prupe.7G188400_v2.0.a1 Prupe.7G188400_v2.0.a1 Prupe.7G188400_v2.0.a1 Prupe.7G188400_v2.0.a1
pyrus_communis	pycom02g08620 pycom15g20180
rosa_chinensis	RchiOBHm_Chr2g0096661
rosa_laevigata	RLG00000016659
rosa_roxburghii	Rroxscaffold_2G00145440
rosa_rugosa	Rorug02G0059300 Rorug02G0059400
rosa_samantha	Rh2AG106800 Rh2BG109200 Rh2CG111000 Rh2DG110600
rosa_wichuraiana	Rw2G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	452
AciI	CCGC	1 cut(s)	515
AcsI	RAATTY	1 cut(s)	228
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	4 cut(s)	270, 271, 410, 452
AgsI	TTSAA	1 cut(s)	502
AhlI	ACTAGT	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	105
AloI	GAACNNNNNNTCC	2 cut(s)	303, 335
AluBI	AGCT	1 cut(s)	530
AluI	AGCT	1 cut(s)	530
Alw26I	GTCTC	1 cut(s)	150
AlwNI	CAGNNNCTG	1 cut(s)	254
AoxI	GGCC	2 cut(s)	133, 273
ApaI	GGGCCC	1 cut(s)	277
ApeKI	GCWGC	2 cut(s)	5, 365
ApoI	RAATTY	1 cut(s)	228
Asp700I	GAANNNNTTC	1 cut(s)	80
AspS9I	GGNCC	2 cut(s)	273, 274
AsuHPI	GGTGA	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	277
BanII	GRGCYC	2 cut(s)	264, 277
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	1 cut(s)	545
BciT130I	CCWGG	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	150
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	2 cut(s)	114, 243
BglII	AGATCT	1 cut(s)	565
BisI	GCNGC	3 cut(s)	6, 366, 516
BlsI	GCNGC	3 cut(s)	7, 367, 517
Bme1390I	CCNGG	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	273, 274
BmiI	GGNNCC	3 cut(s)	261, 275, 321
BmrFI	CCNGG	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	531
BsaBI	GATNNNNATC	1 cut(s)	555
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	4 cut(s)	130, 236, 269, 345
Bsc4I	CCNNNNNNNGG	4 cut(s)	270, 271, 410, 452
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	1 cut(s)	446
Bse8I	GATNNNNATC	1 cut(s)	555
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	4 cut(s)	130, 236, 269, 345
BseGI	GGATG	1 cut(s)	556
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	4 cut(s)	270, 271, 410, 452
BseMII	CTCAG	3 cut(s)	246, 438, 522
BseNI	ACTGG	1 cut(s)	446
BseRI	GAGGAG	2 cut(s)	272, 548
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	352
BshFI	GGCC	2 cut(s)	135, 275
BsiSI	CCGG	1 cut(s)	471
BslI	CCNNNNNNNGG	4 cut(s)	270, 271, 410, 452
BsmAI	GTCTC	1 cut(s)	150
BsmI	GAATGC	2 cut(s)	474, 488
BsnI	GGCC	2 cut(s)	135, 275
Bso31I	GGTCTC	1 cut(s)	150
Bsp120I	GGGCCC	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	264, 277
Bsp143I	GATC	1 cut(s)	565
BspACI	CCGC	1 cut(s)	515
BspANI	GGCC	2 cut(s)	135, 275
BspCNI	CTCAG	3 cut(s)	247, 437, 523
BspLI	GGNNCC	3 cut(s)	261, 275, 321
BspTNI	GGTCTC	1 cut(s)	150
BsrFI	RCCGGY	1 cut(s)	470
BsrI	ACTGG	1 cut(s)	446
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	4 cut(s)	130, 236, 269, 345
BssMI	GATC	1 cut(s)	565
BssT1I	CCWWGG	3 cut(s)	130, 236, 269
Bst2UI	CCWGG	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	3 cut(s)	255, 424, 531
BstF5I	GGATG	1 cut(s)	556
BstKTI	GATC	1 cut(s)	568
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	565
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 365
BstNI	CCWGG	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
BsuRI	GGCC	2 cut(s)	135, 275
BtsCI	GGATG	1 cut(s)	556
BtsIMutI	CAGTG	1 cut(s)	453
Cac8I	GCNNGC	1 cut(s)	49
CaiI	CAGNNNCTG	1 cut(s)	254
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	2 cut(s)	273, 274
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	4 cut(s)	24, 44, 48, 85
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	3 cut(s)	255, 424, 531
DpnI	GATC	1 cut(s)	567
DpnII	GATC	1 cut(s)	565
Eco130I	CCWWGG	3 cut(s)	130, 236, 269
Eco147I	AGGCCT	1 cut(s)	135
Eco24I	GRGCYC	2 cut(s)	264, 277
Eco31I	GGTCTC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	105
EcoT14I	CCWWGG	3 cut(s)	130, 236, 269
EcoT22I	ATGCAT	1 cut(s)	49
EcoT38I	GRGCYC	2 cut(s)	264, 277
ErhI	CCWWGG	3 cut(s)	130, 236, 269
FaeI	CATG	4 cut(s)	27, 47, 51, 88
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FatI	CATG	4 cut(s)	23, 43, 47, 84
Fnu4HI	GCNGC	3 cut(s)	6, 366, 516
FokI	GGATG	1 cut(s)	563
FriOI	GRGCYC	2 cut(s)	264, 277
Fsp4HI	GCNGC	3 cut(s)	6, 366, 516
FspBI	CTAG	2 cut(s)	114, 243
GluI	GCNGC	3 cut(s)	6, 366, 516
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	2 cut(s)	135, 275
HapII	CCGG	1 cut(s)	471
Hin1II	CATG	4 cut(s)	27, 47, 51, 88
HinfI	GANTC	1 cut(s)	251
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	40, 394
Hpy188I	TCNGA	3 cut(s)	220, 256, 427
Hpy8I	GTNNAC	2 cut(s)	40, 394
HpyAV	CCTTC	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 365
HpyF3I	CTNAG	3 cut(s)	255, 424, 531
Hsp92II	CATG	4 cut(s)	27, 47, 51, 88
Kzo9I	GATC	1 cut(s)	565
LmnI	GCTCC	3 cut(s)	259, 448, 535
LpnPI	CCDG	9 cut(s)	92, 119, 261, 290, 417, 459, 484, 497, 506
Lsp1109I	GCAGC	1 cut(s)	352
MaeI	CTAG	2 cut(s)	114, 243
MaeIII	GTNAC	2 cut(s)	187, 352
MalI	GATC	1 cut(s)	567
MboI	GATC	1 cut(s)	565
MboII	GAAGA	1 cut(s)	560
MfeI	CAATTG	1 cut(s)	360
MflI	RGATCY	1 cut(s)	565
MhlI	GDGCHC	2 cut(s)	264, 277
MluCI	AATT	2 cut(s)	228, 360
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	7 cut(s)	150, 250, 276, 310, 355, 526, 540
Mph1103I	ATGCAT	1 cut(s)	49
MroXI	GAANNNNTTC	1 cut(s)	80
MslI	CAYNNNNRTG	1 cut(s)	493
MspI	CCGG	1 cut(s)	471
MspR9I	CCNGG	1 cut(s)	107
MunI	CAATTG	1 cut(s)	360
Mva1269I	GAATGC	2 cut(s)	474, 488
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	356, 365
NdeII	GATC	1 cut(s)	565
NlaIII	CATG	4 cut(s)	27, 47, 51, 88
NlaIV	GGNNCC	3 cut(s)	261, 275, 321
NmeAIII	GCCGAG	1 cut(s)	326
NmuCI	GTSAC	2 cut(s)	187, 352
NsiI	ATGCAT	1 cut(s)	49
NspI	RCATGY	1 cut(s)	51
PaeI	GCATGC	1 cut(s)	51
PceI	AGGCCT	1 cut(s)	135
PctI	GAATGC	2 cut(s)	474, 488
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	452
PfoI	TCCNGGA	1 cut(s)	105
PkrI	GCNGC	3 cut(s)	7, 367, 517
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	3 cut(s)	261, 275, 321
PspOMI	GGGCCC	1 cut(s)	273
PspPI	GGNCC	2 cut(s)	273, 274
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	565
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	493
SatI	GCNGC	3 cut(s)	6, 366, 516
Sau3AI	GATC	1 cut(s)	565
Sau96I	GGNCC	2 cut(s)	273, 274
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	2 cut(s)	264, 277
SetI	ASST	6 cut(s)	146, 161, 199, 321, 376, 532
SmiMI	CAYNNNNRTG	1 cut(s)	493
SpeI	ACTAGT	1 cut(s)	113
SphI	GCATGC	1 cut(s)	51
Sse9I	AATT	2 cut(s)	228, 360
SseBI	AGGCCT	1 cut(s)	135
SsiI	CCGC	1 cut(s)	515
SspMI	CTAG	2 cut(s)	114, 243
StuI	AGGCCT	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	105
StyI	CCWWGG	3 cut(s)	130, 236, 269
TasI	AATT	2 cut(s)	228, 360
TatI	WGTACW	1 cut(s)	420
TauI	GCSGC	1 cut(s)	518
TfiI	GAWTC	1 cut(s)	251
TscAI	CASTG	1 cut(s)	453
TseFI	GTSAC	2 cut(s)	187, 352
TseI	GCWGC	2 cut(s)	5, 365
Tsp45I	GTSAC	2 cut(s)	187, 352
TspDTI	ATGAA	2 cut(s)	12, 73
TspRI	CASTG	1 cut(s)	453
Van91I	CCANNNNNTGG	1 cut(s)	452
XapI	RAATTY	1 cut(s)	228
XceI	RCATGY	1 cut(s)	51
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	2 cut(s)	114, 243
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.