AT3G51610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013517
Physical Location & Seq
Reverse (-)
19139478 .. 19142125
2648 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51610.1

Sequence Viewer

Length: 693 bp
ATGGCGGGCATGGCTGCGGTGGCAGGATTACGACCGTGGAACGCTTTTATTCAAGCTCTAGTTCTGATATCTCTATCATTTCCCTTTCTCTCCAGCGCTTACCGACCTGGAGATATCGTCCGGATGAGCAAGATGGGGCAGTATCACTCTTCGAGAACGACTTGGCATGATGTGATCGGAAAGCATTGCCCGATCTTCGCCGTCAATCGCGAGGTGTTGATCCCAATAGCGAAACCAATTGGCTACACAGGAACTGATCCTTATAAGATAAAATTCCAAGTTGGAAGTGAGAAATTTCTGATTCACTGGCTTTTGGTAATTAATCGTAAGAGCTCAGAAGTTCCGATGATCGATGTAAATTTGAGATATTCTGGAGGAGATCTGCTTGGAGTCACAGCTCAAGTTATCGACATGCCTCATAGCTATCTGAATACACACCCGGAGATCCGCAAACAGTTTTGGGATCCTCAACACTGGCCAAAACATGTTCTTGTTAGATACACATGGAAGGAGCAGTCAGAGATTGATGTATCCTCAGGATTCTATGTCCTGTTTGGCTCAGCTCTCACATTTTCTTTTGTACTCTCCATTTACGTCTTACAATCGTCACGAGAGAAGCTGGCAAGGTTTGTAAGAGAGACGGTGGTGGAGAGCAGCAGCATGAATGTTGGAGAATTTGGCAAGGGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

26.07

Weight (kDa)

9.28

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51610
fragaria_vesca FvH4_6g10100
malus_domestica MD04G1172900.v1.1 MD11G1271600.v1.1 MD12G1088300.v1.1 MD12G1186200.v1.1
prunus_persica Prupe.6G291700_v2.0.a1
pyrus_communis pycom04g15280
rosa_chinensis RchiOBHm_Chr3g0460801
rosa_laevigata RLG00000024980
rosa_multiflora Rmu_sc0007678.1_g000016
rosa_roxburghii Rroxscaffold_6G00419210
rosa_rugosa Rorug03G0046500
rosa_samantha Rh3AG103500 Rh3BG107200 Rh3CG109100 Rh3DG109000
rosa_wichuraiana Rw3G008810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
AccII CGCG 1 cut(s) 210
AccIII TCCGGA 1 cut(s) 120
AciI CCGC 3 cut(s) 5, 17, 448
AclWI GGATC 5 cut(s) 214, 251, 439, 458, 471
AcoI YGGCCR 1 cut(s) 476
AcsI RAATTY 4 cut(s) 272, 293, 358, 674
AfaI GTAC 1 cut(s) 582
AfeI AGCGCT 1 cut(s) 97
AflIII ACRYGT 1 cut(s) 484
AgsI TTSAA 1 cut(s) 53
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 6 cut(s) 56, 333, 398, 423, 563, 619
AluI AGCT 6 cut(s) 56, 333, 398, 423, 563, 619
Alw21I GWGCWC 1 cut(s) 335
Alw26I GTCTC 1 cut(s) 632
AlwI GGATC 5 cut(s) 214, 251, 439, 458, 471
AlwNI CAGNNNCTG 1 cut(s) 254
Aor13HI TCCGGA 1 cut(s) 120
Aor51HI AGCGCT 1 cut(s) 97
AoxI GGCC 1 cut(s) 476
ApeKI GCWGC 3 cut(s) 14, 654, 657
ApoI RAATTY 4 cut(s) 272, 293, 358, 674
AseI ATTAAT 1 cut(s) 321
AspLEI GCGC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 440
AxyI CCTNAGG 1 cut(s) 535
BalI TGGCCA 1 cut(s) 478
BamHI GGATCC 1 cut(s) 463
BanII GRGCYC 1 cut(s) 335
BauI CACGAG 1 cut(s) 609
Bbv12I GWGCWC 1 cut(s) 335
BbvI GCAGC 2 cut(s) 666, 669
BccI CCATC 1 cut(s) 127
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 108
BciVI GTATCC 1 cut(s) 541
BcnI CCSGG 1 cut(s) 440
BcoDI GTCTC 1 cut(s) 632
BfaI CTAG 1 cut(s) 59
BfoI RGCGCY 1 cut(s) 99
BfuI GTATCC 1 cut(s) 541
BglII AGATCT 1 cut(s) 379
BisI GCNGC 3 cut(s) 15, 655, 658
BlpI GCTNAGC 1 cut(s) 559
BlsI GCNGC 3 cut(s) 16, 656, 659
Bme1390I CCNGG 2 cut(s) 108, 440
BmiI GGNNCC 1 cut(s) 465
BmrFI CCNGG 2 cut(s) 108, 440
BpmI CTGGAG 3 cut(s) 76, 129, 393
Bpu1102I GCTNAGC 1 cut(s) 559
BpuEI CTTGAG 1 cut(s) 384
BpuMI CCSGG 1 cut(s) 440
Bsa29I ATCGAT 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 35
BsaWI WCCGGW 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bse1I ACTGG 2 cut(s) 311, 479
Bse21I CCTNAGG 1 cut(s) 535
Bse3DI GCAATG 1 cut(s) 184
BseAI TCCGGA 1 cut(s) 120
BseBI CCWGG 1 cut(s) 108
BseCI ATCGAT 1 cut(s) 351
BseDI CCNNGG 1 cut(s) 35
BseGI GGATG 1 cut(s) 129
BseMI GCAATG 1 cut(s) 184
BseMII CTCAG 3 cut(s) 348, 549, 573
BseNI ACTGG 2 cut(s) 311, 479
BseRI GAGGAG 1 cut(s) 390
BseXI GCAGC 2 cut(s) 666, 669
Bsh1236I CGCG 1 cut(s) 210
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 1 cut(s) 478
BshVI ATCGAT 1 cut(s) 351
BsiEI CGRYCG 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 335
BsiSI CCGG 2 cut(s) 121, 440
BsmAI GTCTC 1 cut(s) 632
BsmBI CGTCTC 1 cut(s) 632
BsnI GGCC 1 cut(s) 478
Bsp1286I GDGCHC 1 cut(s) 335
Bsp13I TCCGGA 1 cut(s) 120
Bsp143I GATC 8 cut(s) 174, 192, 219, 256, 348, 379, 444, 463
Bsp1720I GCTNAGC 1 cut(s) 559
Bsp68I TCGCGA 1 cut(s) 210
BspACI CCGC 3 cut(s) 5, 17, 448
BspANI GGCC 1 cut(s) 478
BspCNI CTCAG 3 cut(s) 347, 548, 572
BspDI ATCGAT 1 cut(s) 351
BspEI TCCGGA 1 cut(s) 120
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 465
BspPI GGATC 5 cut(s) 214, 251, 439, 458, 471
BsrDI GCAATG 1 cut(s) 184
BsrI ACTGG 2 cut(s) 311, 479
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 8 cut(s) 174, 192, 219, 256, 348, 379, 444, 463
BssSI CACGAG 1 cut(s) 609
Bst2BI CACGAG 1 cut(s) 609
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 3 cut(s) 36, 456, 643
Bst6I CTCTTC 1 cut(s) 154
BstC8I GCNNGC 2 cut(s) 7, 621
BstDEI CTNAG 3 cut(s) 334, 535, 559
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 1 cut(s) 129
BstFNI CGCG 1 cut(s) 210
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 8 cut(s) 177, 195, 222, 259, 351, 382, 447, 466
BstMAI GTCTC 1 cut(s) 632
BstMBI GATC 8 cut(s) 174, 192, 219, 256, 348, 379, 444, 463
BstMCI CGRYCG 1 cut(s) 35
BstMWI GCNNNNNNNGC 2 cut(s) 11, 20
BstNI CCWGG 1 cut(s) 108
BstNSI RCATGY 2 cut(s) 415, 488
BstSCI CCNGG 2 cut(s) 106, 438
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 2 cut(s) 666, 669
BstX2I RGATCY 3 cut(s) 379, 444, 463
BstYI RGATCY 3 cut(s) 379, 444, 463
Bsu15I ATCGAT 1 cut(s) 351
Bsu36I CCTNAGG 1 cut(s) 535
BsuI GTATCC 1 cut(s) 541
BsuRI GGCC 1 cut(s) 478
BsuTUI ATCGAT 1 cut(s) 351
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 1 cut(s) 129
BtsIMutI CAGTG 2 cut(s) 304, 472
BtuMI TCGCGA 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 7, 621
CaiI CAGNNNCTG 1 cut(s) 254
CfoI GCGC 1 cut(s) 98
ClaI ATCGAT 1 cut(s) 351
Csp6I GTAC 1 cut(s) 581
CviAII CATG 6 cut(s) 10, 167, 412, 485, 504, 661
CviQI GTAC 1 cut(s) 581
DdeI CTNAG 3 cut(s) 334, 535, 559
DpnI GATC 8 cut(s) 176, 194, 221, 258, 350, 381, 446, 465
DpnII GATC 8 cut(s) 174, 192, 219, 256, 348, 379, 444, 463
EaeI YGGCCR 1 cut(s) 476
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
Ecl136II GAGCTC 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 335
Eco32I GATATC 2 cut(s) 69, 115
Eco47III AGCGCT 1 cut(s) 97
Eco53kI GAGCTC 1 cut(s) 333
Eco81I CCTNAGG 1 cut(s) 535
EcoICRI GAGCTC 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 106
EcoRV GATATC 2 cut(s) 69, 115
EcoT38I GRGCYC 1 cut(s) 335
Esp3I CGTCTC 1 cut(s) 632
FaeI CATG 6 cut(s) 13, 170, 415, 488, 507, 664
FaiI YATR 9 cut(s) 11, 168, 264, 413, 420, 486, 505, 546, 662
FatI CATG 6 cut(s) 9, 166, 411, 484, 503, 660
Fnu4HI GCNGC 3 cut(s) 15, 655, 658
FokI GGATG 1 cut(s) 136
FriOI GRGCYC 1 cut(s) 335
Fsp4HI GCNGC 3 cut(s) 15, 655, 658
FspBI CTAG 1 cut(s) 59
GlaI GCGC 1 cut(s) 97
GluI GCNGC 3 cut(s) 15, 655, 658
GsuI CTGGAG 3 cut(s) 76, 129, 393
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 1 cut(s) 478
HapII CCGG 2 cut(s) 121, 440
HhaI GCGC 1 cut(s) 98
Hin1II CATG 6 cut(s) 13, 170, 415, 488, 507, 664
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HinfI GANTC 3 cut(s) 301, 390, 540
HpaII CCGG 2 cut(s) 121, 440
Hpy188I TCNGA 7 cut(s) 66, 179, 300, 337, 345, 429, 520
Hpy188III TCNNGA 6 cut(s) 121, 153, 209, 372, 537, 609
HpyAV CCTTC 1 cut(s) 502
HpyCH4III ACNGT 3 cut(s) 36, 456, 643
HpyCH4IV ACGT 1 cut(s) 594
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 20
HpyF3I CTNAG 3 cut(s) 334, 535, 559
HpySE526I ACGT 1 cut(s) 594
Hsp92II CATG 6 cut(s) 13, 170, 415, 488, 507, 664
HspAI GCGC 1 cut(s) 96
Kpn2I TCCGGA 1 cut(s) 120
Kzo9I GATC 8 cut(s) 174, 192, 219, 256, 348, 379, 444, 463
LmnI GCTCC 1 cut(s) 511
Lsp1109I GCAGC 2 cut(s) 666, 669
MaeI CTAG 1 cut(s) 59
MaeII ACGT 1 cut(s) 594
MaeIII GTNAC 2 cut(s) 391, 606
MalI GATC 8 cut(s) 176, 194, 221, 258, 350, 381, 446, 465
MboI GATC 8 cut(s) 174, 192, 219, 256, 348, 379, 444, 463
MboII GAAGA 2 cut(s) 141, 187
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 3 cut(s) 379, 444, 463
MhlI GDGCHC 1 cut(s) 335
MlsI TGGCCA 1 cut(s) 478
MluCI AATT 6 cut(s) 237, 272, 293, 318, 358, 674
MluNI TGGCCA 1 cut(s) 478
MlyI GAGTC 1 cut(s) 399
MmeI TCCRAC 2 cut(s) 262, 649
MnlI CCTC 5 cut(s) 205, 368, 426, 477, 544
Mox20I TGGCCA 1 cut(s) 478
MroI TCCGGA 1 cut(s) 120
MscI TGGCCA 1 cut(s) 478
MseI TTAA 1 cut(s) 321
Msp20I TGGCCA 1 cut(s) 478
MspI CCGG 2 cut(s) 121, 440
MspR9I CCNGG 2 cut(s) 108, 440
MunI CAATTG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 108
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 11, 20
NciI CCSGG 1 cut(s) 440
NdeII GATC 8 cut(s) 174, 192, 219, 256, 348, 379, 444, 463
NlaIII CATG 6 cut(s) 13, 170, 415, 488, 507, 664
NlaIV GGNNCC 1 cut(s) 465
NmuCI GTSAC 2 cut(s) 391, 606
NruI TCGCGA 1 cut(s) 210
NspI RCATGY 2 cut(s) 415, 488
PciI ACATGT 1 cut(s) 484
PfeI GAWTC 2 cut(s) 301, 540
PkrI GCNGC 3 cut(s) 16, 656, 659
PleI GAGTC 1 cut(s) 398
PpsI GAGTC 1 cut(s) 398
PscI ACATGT 1 cut(s) 484
PshBI ATTAAT 1 cut(s) 321
PsiI TTATAA 1 cut(s) 264
Psp124BI GAGCTC 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 465
PstNI CAGNNNCTG 1 cut(s) 254
PsuI RGATCY 3 cut(s) 379, 444, 463
RruI TCGCGA 1 cut(s) 210
RsaI GTAC 1 cut(s) 582
RsaNI GTAC 1 cut(s) 581
SacI GAGCTC 1 cut(s) 335
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 3 cut(s) 15, 655, 658
Sau3AI GATC 8 cut(s) 174, 192, 219, 256, 348, 379, 444, 463
SchI GAGTC 1 cut(s) 399
ScrFI CCNGG 2 cut(s) 108, 440
SduI GDGCHC 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 6 cut(s) 237, 272, 293, 318, 358, 674
SsiI CCGC 3 cut(s) 5, 17, 448
SspMI CTAG 1 cut(s) 59
SstI GAGCTC 1 cut(s) 335
StyD4I CCNGG 2 cut(s) 106, 438
TaaI ACNGT 3 cut(s) 36, 456, 643
TaiI ACGT 1 cut(s) 597
TaqI TCGA 3 cut(s) 152, 351, 408
TasI AATT 6 cut(s) 237, 272, 293, 318, 358, 674
TatI WGTACW 1 cut(s) 580
TfiI GAWTC 2 cut(s) 301, 540
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 2 cut(s) 311, 479
TseFI GTSAC 2 cut(s) 391, 606
TseI GCWGC 3 cut(s) 14, 654, 657
Tsp45I GTSAC 2 cut(s) 391, 606
TspDTI ATGAA 1 cut(s) 677
TspRI CASTG 2 cut(s) 311, 479
VspI ATTAAT 1 cut(s) 321
XapI RAATTY 4 cut(s) 272, 293, 358, 674
XceI RCATGY 2 cut(s) 415, 488
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.