Rmu_sc0007678.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007678.1
OG0013517
Physical Location & Seq
Forward (+)
71521 .. 74235
2715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007678.1_g000016.1.cds

Sequence Viewer

Length: 675 bp
atggcgggaatcggagggagattgattctctctcagttgcttctgattctcttgtctttatccatccccagtttctctgttgcttacagagcaggtgacaccgtccccatgagcaagatgggcctgtaccactctatgaaaaccgactggcacgacatgatcggtcgacattgcccaatcttcgctgtgaatcgtgaggtgttggttcctattgggaagccgatgggttacactggcgctgatgcctacaaaatatcatttcaagttgggagagaaaagtttttgattccatggctttatctgataaatcgtaaaagctcagaggttccaatgattgatgtgcatttgagatactccggaagtgatttgcatggtgtcaccgctaaagttgtggatatgcctcaccactatgtagaaattcatccagatattcgtaaacaattttgggatccacagaactggccaaagcatgtgctggtcagatatacatgggaggaacaatcagagatagacgtggcttctggattttacgtactatttggatcaggtctcacactctcttttattctctcaatatacgtcttgcaatcatcacgggacaaatttgcgaggtttgtgatggagagagttgcagaaagcaacatgcctgctggaggtgtggcaaaggttgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

25.37

Weight (kDa)

8.58

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51610
fragaria_vesca FvH4_6g10100
malus_domestica MD04G1172900.v1.1 MD11G1271600.v1.1 MD12G1088300.v1.1 MD12G1186200.v1.1
prunus_persica Prupe.6G291700_v2.0.a1
pyrus_communis pycom04g15280
rosa_chinensis RchiOBHm_Chr3g0460801
rosa_laevigata RLG00000024980
rosa_multiflora Rmu_sc0007678.1_g000016
rosa_roxburghii Rroxscaffold_6G00419210
rosa_rugosa Rorug03G0046500
rosa_samantha Rh3AG103500 Rh3BG107200 Rh3CG109100 Rh3DG109000
rosa_wichuraiana Rw3G008810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 83
AccI GTMKAC 1 cut(s) 166
AccIII TCCGGA 1 cut(s) 356
AciI CCGC 2 cut(s) 5, 381
AclWI GGATC 3 cut(s) 443, 456, 550
AcoI YGGCCR 1 cut(s) 461
AcsI RAATTY 2 cut(s) 417, 602
AfaI GTAC 2 cut(s) 128, 534
AfiI CCNNNNNNNGG 1 cut(s) 653
AgsI TTSAA 2 cut(s) 263, 671
AjiI CACGTC 1 cut(s) 514
AluBI AGCT 1 cut(s) 318
AluI AGCT 1 cut(s) 318
Alw26I GTCTC 1 cut(s) 554
AlwI GGATC 3 cut(s) 443, 456, 550
Aor13HI TCCGGA 1 cut(s) 356
AoxI GGCC 2 cut(s) 121, 461
ApoI RAATTY 2 cut(s) 417, 602
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 3 cut(s) 107, 370, 395
BalI TGGCCA 1 cut(s) 463
BamHI GGATCC 1 cut(s) 448
BccI CCATC 4 cut(s) 71, 112, 217, 613
BcoDI GTCTC 1 cut(s) 554
BfoI RGCGCY 1 cut(s) 240
BfuAI ACCTGC 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 514
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 3 cut(s) 207, 327, 450
BmrI ACTGGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 672
BsaAI YACGTR 1 cut(s) 532
BsaI GGTCTC 1 cut(s) 554
BsaJI CCNNGG 1 cut(s) 290
BsaWI WCCGGW 1 cut(s) 356
Bsc4I CCNNNNNNNGG 1 cut(s) 653
Bse1I ACTGG 4 cut(s) 69, 152, 238, 464
Bse3DI GCAATG 1 cut(s) 169
BseAI TCCGGA 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 2 cut(s) 63, 421
BseLI CCNNNNNNNGG 1 cut(s) 653
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 2 cut(s) 47, 333
BseNI ACTGG 4 cut(s) 69, 152, 238, 464
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 2 cut(s) 123, 463
BsiEI CGRYCG 1 cut(s) 166
BsiSI CCGG 1 cut(s) 357
BslFI GGGAC 2 cut(s) 89, 611
BslI CCNNNNNNNGG 1 cut(s) 653
BsmAI GTCTC 1 cut(s) 554
BsmFI GGGAC 2 cut(s) 89, 611
BsnI GGCC 2 cut(s) 123, 463
Bso31I GGTCTC 1 cut(s) 554
Bsp13I TCCGGA 1 cut(s) 356
Bsp143I GATC 3 cut(s) 159, 448, 542
Bsp19I CCATGG 1 cut(s) 290
BspACI CCGC 2 cut(s) 5, 381
BspANI GGCC 2 cut(s) 123, 463
BspCNI CTCAG 2 cut(s) 46, 332
BspEI TCCGGA 1 cut(s) 356
BspLI GGNNCC 3 cut(s) 207, 327, 450
BspMI ACCTGC 1 cut(s) 83
BspPI GGATC 3 cut(s) 443, 456, 550
BspTNI GGTCTC 1 cut(s) 554
BsrDI GCAATG 1 cut(s) 169
BsrI ACTGG 4 cut(s) 69, 152, 238, 464
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 3 cut(s) 159, 448, 542
BssT1I CCWWGG 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 103
BstBAI YACGTR 1 cut(s) 532
BstC8I GCNNGC 1 cut(s) 648
BstDEI CTNAG 2 cut(s) 33, 319
BstDSI CCRYGG 1 cut(s) 290
BstENI CCTNNNNNAGG 1 cut(s) 651
BstF5I GGATG 2 cut(s) 63, 421
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 3 cut(s) 162, 451, 545
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 3 cut(s) 159, 448, 542
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 2 cut(s) 89, 120
BstNSI RCATGY 2 cut(s) 473, 646
BstSNI TACGTA 1 cut(s) 532
BstX2I RGATCY 1 cut(s) 448
BstXI CCANNNNNNTGG 1 cut(s) 459
BstYI RGATCY 1 cut(s) 448
BsuRI GGCC 2 cut(s) 123, 463
BtgI CCRYGG 1 cut(s) 290
BtrI CACGTC 1 cut(s) 514
BtsCI GGATG 2 cut(s) 63, 421
BtsIMutI CAGTG 1 cut(s) 231
BveI ACCTGC 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 648
CfoI GCGC 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 121
Csp6I GTAC 2 cut(s) 127, 533
CviAII CATG 7 cut(s) 109, 157, 291, 371, 470, 489, 643
CviJI RGCY 6 cut(s) 123, 220, 295, 318, 463, 518
CviKI_1 RGCY 6 cut(s) 123, 220, 295, 318, 463, 518
CviQI GTAC 2 cut(s) 127, 533
DdeI CTNAG 2 cut(s) 33, 319
DpnI GATC 3 cut(s) 161, 450, 544
DpnII GATC 3 cut(s) 159, 448, 542
EaeI YGGCCR 1 cut(s) 461
Eco105I TACGTA 1 cut(s) 532
Eco130I CCWWGG 1 cut(s) 290
Eco31I GGTCTC 1 cut(s) 554
EcoNI CCTNNNNNAGG 1 cut(s) 651
EcoT14I CCWWGG 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 290
FaeI CATG 7 cut(s) 112, 160, 294, 374, 473, 492, 646
FaqI GGGAC 2 cut(s) 89, 611
FatI CATG 7 cut(s) 108, 156, 290, 370, 469, 488, 642
FblI GTMKAC 1 cut(s) 166
FokI GGATG 2 cut(s) 50, 408
GlaI GCGC 1 cut(s) 238
GsuI CTGGAG 1 cut(s) 672
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 2 cut(s) 123, 463
HapII CCGG 1 cut(s) 357
HhaI GCGC 1 cut(s) 239
Hin1II CATG 7 cut(s) 112, 160, 294, 374, 473, 492, 646
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HincII GTYRAC 1 cut(s) 167
HindII GTYRAC 1 cut(s) 167
HinfI GANTC 5 cut(s) 9, 25, 46, 190, 286
HpaII CCGG 1 cut(s) 357
HphI GGTGA 3 cut(s) 107, 370, 395
Hpy166II GTNNAC 2 cut(s) 167, 437
Hpy188I TCNGA 6 cut(s) 14, 45, 303, 322, 482, 505
Hpy188III TCNNGA 4 cut(s) 194, 357, 425, 522
Hpy8I GTNNAC 2 cut(s) 167, 437
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4IV ACGT 3 cut(s) 513, 531, 579
HpyCH4V TGCA 4 cut(s) 343, 370, 586, 632
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 120
HpyF3I CTNAG 2 cut(s) 33, 319
HpySE526I ACGT 3 cut(s) 513, 531, 579
Hsp92II CATG 7 cut(s) 112, 160, 294, 374, 473, 492, 646
HspAI GCGC 1 cut(s) 237
Kpn2I TCCGGA 1 cut(s) 356
Kzo9I GATC 3 cut(s) 159, 448, 542
LweI GCATC 1 cut(s) 232
MaeII ACGT 3 cut(s) 513, 531, 579
MaeIII GTNAC 3 cut(s) 95, 227, 376
MalI GATC 3 cut(s) 161, 450, 544
MboI GATC 3 cut(s) 159, 448, 542
MboII GAAGA 1 cut(s) 172
MflI RGATCY 1 cut(s) 448
MlsI TGGCCA 1 cut(s) 463
MluCI AATT 3 cut(s) 417, 440, 602
MluNI TGGCCA 1 cut(s) 463
MnlI CCTC 7 cut(s) 8, 190, 316, 411, 487, 603, 647
Mox20I TGGCCA 1 cut(s) 463
MroI TCCGGA 1 cut(s) 356
MscI TGGCCA 1 cut(s) 463
MslI CAYNNNNRTG 1 cut(s) 408
Msp20I TGGCCA 1 cut(s) 463
MspI CCGG 1 cut(s) 357
MwoI GCNNNNNNNGC 2 cut(s) 89, 120
NcoI CCATGG 1 cut(s) 290
NdeII GATC 3 cut(s) 159, 448, 542
NlaIII CATG 7 cut(s) 112, 160, 294, 374, 473, 492, 646
NlaIV GGNNCC 3 cut(s) 207, 327, 450
NmuCI GTSAC 2 cut(s) 95, 376
NspI RCATGY 2 cut(s) 473, 646
PaqCI CACCTGC 1 cut(s) 83
PfeI GAWTC 5 cut(s) 9, 25, 46, 190, 286
PflFI GACNNNGTC 1 cut(s) 101
Ppu21I YACGTR 1 cut(s) 532
PspN4I GGNNCC 3 cut(s) 207, 327, 450
PspPI GGNCC 1 cut(s) 121
PsuI RGATCY 1 cut(s) 448
PsyI GACNNNGTC 1 cut(s) 101
RsaI GTAC 2 cut(s) 128, 534
RsaNI GTAC 2 cut(s) 127, 533
RseI CAYNNNNRTG 1 cut(s) 408
SalI GTCGAC 1 cut(s) 165
Sau3AI GATC 3 cut(s) 159, 448, 542
Sau96I GGNCC 1 cut(s) 121
SfaNI GCATC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 408
SnaBI TACGTA 1 cut(s) 532
Sse9I AATT 3 cut(s) 417, 440, 602
SsiI CCGC 2 cut(s) 5, 381
StyI CCWWGG 1 cut(s) 290
TaaI ACNGT 1 cut(s) 103
TaiI ACGT 3 cut(s) 516, 534, 582
TaqI TCGA 1 cut(s) 166
TaqII GACCGA 1 cut(s) 152
TasI AATT 3 cut(s) 417, 440, 602
TfiI GAWTC 5 cut(s) 9, 25, 46, 190, 286
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 2 cut(s) 95, 376
Tsp45I GTSAC 2 cut(s) 95, 376
TspDTI ATGAA 2 cut(s) 152, 410
TspRI CASTG 1 cut(s) 238
Tth111I GACNNNGTC 1 cut(s) 101
XagI CCTNNNNNAGG 1 cut(s) 651
XapI RAATTY 2 cut(s) 417, 602
XceI RCATGY 2 cut(s) 473, 646
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.