Rh3CG109100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0013517
Physical Location & Seq
Reverse (-)
8613781 .. 8617131
3351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG109100.1

Sequence Viewer

Length: 552 bp
ATGGCGGGAATCGGAGGGAGATCGATTCTCTCTCGATTGCTTCTGATTCTCTTGTCTTTATCCATCCCCAGTTTCTCTGTTGCTCACAGAGCAGGTGACATCGTCCCGATGAGCAAGATGGGCCTGTACCACTCTATGAAAACCGACTGGCACGACATGATCGGTCGACATTGCCCAATCTTCGCTGTGAATCGTGAGGTGTTGGTTCCTATTGCGAAGCCGATGGGTTACACTGGCACTGATGCCTACAAAATATCATTTCAAGTTGGGAGAGAAAAGTTTTTGATTCCATGGCTTTATCTGATAAATCGTAAAAGCTCAGAGGTTCCAATGATTGATGTGCATTTGAGATACTCCGGAAGTGATTTGCATGGTGTCACCGCTAAAGTTGTGGATATGCCTCACCACTATGTAGAAATTCATCCAGATATTCGTAAACAATTTTGGGATCCACAGAACTGGCCAAAGCATGTGCTGGTCAGATATACATGGGAGGAACAATCAGAGATAGACGTGGCTTCTGGATTTTACGTACTATTTGGATCAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.86

Weight (kDa)

8.65

Isoelectric Point (pI)

38.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51610
fragaria_vesca FvH4_6g10100
malus_domestica MD04G1172900.v1.1 MD11G1271600.v1.1 MD12G1088300.v1.1 MD12G1186200.v1.1
prunus_persica Prupe.6G291700_v2.0.a1
pyrus_communis pycom04g15280
rosa_chinensis RchiOBHm_Chr3g0460801
rosa_laevigata RLG00000024980
rosa_multiflora Rmu_sc0007678.1_g000016
rosa_roxburghii Rroxscaffold_6G00419210
rosa_rugosa Rorug03G0046500
rosa_samantha Rh3AG103500 Rh3BG107200 Rh3CG109100 Rh3DG109000
rosa_wichuraiana Rw3G008810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 83
AccI GTMKAC 1 cut(s) 166
AccIII TCCGGA 1 cut(s) 356
AciI CCGC 2 cut(s) 5, 381
AclWI GGATC 3 cut(s) 443, 456, 550
AcoI YGGCCR 1 cut(s) 461
AcsI RAATTY 1 cut(s) 417
AfaI GTAC 2 cut(s) 128, 534
AgsI TTSAA 1 cut(s) 263
AjiI CACGTC 1 cut(s) 514
AluBI AGCT 1 cut(s) 318
AluI AGCT 1 cut(s) 318
AlwI GGATC 3 cut(s) 443, 456, 550
Aor13HI TCCGGA 1 cut(s) 356
AoxI GGCC 2 cut(s) 121, 461
ApoI RAATTY 1 cut(s) 417
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 3 cut(s) 107, 370, 395
BalI TGGCCA 1 cut(s) 463
BamHI GGATCC 1 cut(s) 448
BccI CCATC 3 cut(s) 71, 112, 217
BfuAI ACCTGC 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 514
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 3 cut(s) 207, 327, 450
BmrI ACTGGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 63
Bsa29I ATCGAT 1 cut(s) 23
BsaAI YACGTR 1 cut(s) 532
BsaJI CCNNGG 1 cut(s) 290
BsaWI WCCGGW 1 cut(s) 356
Bse1I ACTGG 4 cut(s) 69, 152, 238, 464
Bse3DI GCAATG 1 cut(s) 169
BseAI TCCGGA 1 cut(s) 356
BseCI ATCGAT 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 2 cut(s) 63, 421
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 4 cut(s) 69, 152, 238, 464
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 2 cut(s) 123, 463
BshVI ATCGAT 1 cut(s) 23
BsiEI CGRYCG 1 cut(s) 166
BsiSI CCGG 1 cut(s) 357
BslFI GGGAC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 2 cut(s) 123, 463
Bsp13I TCCGGA 1 cut(s) 356
Bsp143I GATC 4 cut(s) 20, 159, 448, 542
Bsp19I CCATGG 1 cut(s) 290
BspACI CCGC 2 cut(s) 5, 381
BspANI GGCC 2 cut(s) 123, 463
BspCNI CTCAG 1 cut(s) 332
BspDI ATCGAT 1 cut(s) 23
BspEI TCCGGA 1 cut(s) 356
BspLI GGNNCC 3 cut(s) 207, 327, 450
BspMI ACCTGC 1 cut(s) 83
BspPI GGATC 3 cut(s) 443, 456, 550
BsrDI GCAATG 1 cut(s) 169
BsrI ACTGG 4 cut(s) 69, 152, 238, 464
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 4 cut(s) 20, 159, 448, 542
BssT1I CCWWGG 1 cut(s) 290
BstBAI YACGTR 1 cut(s) 532
BstDEI CTNAG 1 cut(s) 319
BstDSI CCRYGG 1 cut(s) 290
BstF5I GGATG 2 cut(s) 63, 421
BstKTI GATC 4 cut(s) 23, 162, 451, 545
BstMBI GATC 4 cut(s) 20, 159, 448, 542
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 2 cut(s) 89, 120
BstNSI RCATGY 1 cut(s) 473
BstSNI TACGTA 1 cut(s) 532
BstX2I RGATCY 1 cut(s) 448
BstXI CCANNNNNNTGG 1 cut(s) 459
BstYI RGATCY 1 cut(s) 448
Bsu15I ATCGAT 1 cut(s) 23
BsuRI GGCC 2 cut(s) 123, 463
BsuTUI ATCGAT 1 cut(s) 23
BtgI CCRYGG 1 cut(s) 290
BtrI CACGTC 1 cut(s) 514
BtsCI GGATG 2 cut(s) 63, 421
BtsIMutI CAGTG 2 cut(s) 231, 237
BveI ACCTGC 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 121
ClaI ATCGAT 1 cut(s) 23
Csp6I GTAC 2 cut(s) 127, 533
CviAII CATG 5 cut(s) 157, 291, 371, 470, 489
CviJI RGCY 6 cut(s) 123, 220, 295, 318, 463, 518
CviKI_1 RGCY 6 cut(s) 123, 220, 295, 318, 463, 518
CviQI GTAC 2 cut(s) 127, 533
DdeI CTNAG 1 cut(s) 319
DpnI GATC 4 cut(s) 22, 161, 450, 544
DpnII GATC 4 cut(s) 20, 159, 448, 542
EaeI YGGCCR 1 cut(s) 461
Eco105I TACGTA 1 cut(s) 532
Eco130I CCWWGG 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 290
FaeI CATG 5 cut(s) 160, 294, 374, 473, 492
FaiI YATR 9 cut(s) 137, 158, 292, 372, 398, 411, 471, 486, 490
FaqI GGGAC 1 cut(s) 89
FatI CATG 5 cut(s) 156, 290, 370, 469, 488
FblI GTMKAC 1 cut(s) 166
FokI GGATG 2 cut(s) 50, 408
HaeIII GGCC 2 cut(s) 123, 463
HapII CCGG 1 cut(s) 357
Hin1II CATG 5 cut(s) 160, 294, 374, 473, 492
HincII GTYRAC 1 cut(s) 167
HindII GTYRAC 1 cut(s) 167
HinfI GANTC 5 cut(s) 9, 25, 46, 190, 286
HpaII CCGG 1 cut(s) 357
HphI GGTGA 3 cut(s) 107, 370, 395
Hpy166II GTNNAC 2 cut(s) 167, 437
Hpy188I TCNGA 6 cut(s) 14, 45, 303, 322, 482, 505
Hpy188III TCNNGA 6 cut(s) 33, 106, 194, 357, 425, 522
Hpy8I GTNNAC 2 cut(s) 167, 437
HpyCH4IV ACGT 2 cut(s) 513, 531
HpyCH4V TGCA 2 cut(s) 343, 370
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 120
HpyF3I CTNAG 1 cut(s) 319
HpySE526I ACGT 2 cut(s) 513, 531
Hsp92II CATG 5 cut(s) 160, 294, 374, 473, 492
Kpn2I TCCGGA 1 cut(s) 356
Kzo9I GATC 4 cut(s) 20, 159, 448, 542
LweI GCATC 1 cut(s) 232
MaeII ACGT 2 cut(s) 513, 531
MaeIII GTNAC 3 cut(s) 95, 227, 376
MalI GATC 4 cut(s) 22, 161, 450, 544
MboI GATC 4 cut(s) 20, 159, 448, 542
MboII GAAGA 1 cut(s) 172
MflI RGATCY 1 cut(s) 448
MlsI TGGCCA 1 cut(s) 463
MluCI AATT 2 cut(s) 417, 440
MluNI TGGCCA 1 cut(s) 463
MnlI CCTC 5 cut(s) 8, 190, 316, 411, 487
Mox20I TGGCCA 1 cut(s) 463
MroI TCCGGA 1 cut(s) 356
MscI TGGCCA 1 cut(s) 463
MslI CAYNNNNRTG 1 cut(s) 408
Msp20I TGGCCA 1 cut(s) 463
MspI CCGG 1 cut(s) 357
MwoI GCNNNNNNNGC 2 cut(s) 89, 120
NcoI CCATGG 1 cut(s) 290
NdeII GATC 4 cut(s) 20, 159, 448, 542
NlaIII CATG 5 cut(s) 160, 294, 374, 473, 492
NlaIV GGNNCC 3 cut(s) 207, 327, 450
NmuCI GTSAC 2 cut(s) 95, 376
NspI RCATGY 1 cut(s) 473
PaqCI CACCTGC 1 cut(s) 83
PfeI GAWTC 5 cut(s) 9, 25, 46, 190, 286
PflFI GACNNNGTC 1 cut(s) 101
Ppu21I YACGTR 1 cut(s) 532
PspN4I GGNNCC 3 cut(s) 207, 327, 450
PspPI GGNCC 1 cut(s) 121
PsuI RGATCY 1 cut(s) 448
PsyI GACNNNGTC 1 cut(s) 101
RsaI GTAC 2 cut(s) 128, 534
RsaNI GTAC 2 cut(s) 127, 533
RseI CAYNNNNRTG 1 cut(s) 408
SalI GTCGAC 1 cut(s) 165
Sau3AI GATC 4 cut(s) 20, 159, 448, 542
Sau96I GGNCC 1 cut(s) 121
SetI ASST 7 cut(s) 97, 201, 320, 327, 516, 534, 550
SfaNI GCATC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 408
SnaBI TACGTA 1 cut(s) 532
Sse9I AATT 2 cut(s) 417, 440
SsiI CCGC 2 cut(s) 5, 381
StyI CCWWGG 1 cut(s) 290
TaiI ACGT 2 cut(s) 516, 534
TaqI TCGA 3 cut(s) 23, 34, 166
TaqII GACCGA 1 cut(s) 152
TasI AATT 2 cut(s) 417, 440
TfiI GAWTC 5 cut(s) 9, 25, 46, 190, 286
TscAI CASTG 2 cut(s) 238, 244
TseFI GTSAC 2 cut(s) 95, 376
Tsp45I GTSAC 2 cut(s) 95, 376
TspDTI ATGAA 2 cut(s) 152, 410
TspRI CASTG 2 cut(s) 238, 244
Tth111I GACNNNGTC 1 cut(s) 101
XapI RAATTY 1 cut(s) 417
XceI RCATGY 1 cut(s) 473
XmiI GTMKAC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.