pycom04g15280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0013517
Physical Location & Seq
Forward (+)
18176827 .. 18178652
1826 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g15280.1

Sequence Viewer

Length: 453 bp
ATGGACTATACAGGAGCTGATGCTTATAAAATATCATTTCAAGTTGGGAGAGAAAAGTTTTTAGTACCATGGCTTTTTGTGATAAATCGTAAAAGTTCCGAGGTCCCAATGATTGATGCCCATTTGAGGTATTCAGGAAGTGATTTGCATGGTGTCACTGCTAAAGTTGTGGATATGCCTCACCACTACGTAGAAATCCATCCAGATATTCATAAACAATTTTGGGATGCTCAGCACTGGCCAAAGCATGTGTTGGTCAGATATACATGGGAGGAGCAATCAGAGATAGACGTGACATCTGGATTTTATGTACTGTTTGGATCGGGTCTTATGCTTTCTTTTATTCTGTCGATATACATATTGCAATCATCACGGGACAAGTTAGCAAGGTTTGTGAGGGAGAGAGTCGCAGAAAGCAACATGCCTGCTGGAGGTGTGGCAAAGGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.3

Weight (kDa)

6.44

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51610
fragaria_vesca FvH4_6g10100
malus_domestica MD04G1172900.v1.1 MD11G1271600.v1.1 MD12G1088300.v1.1 MD12G1186200.v1.1
prunus_persica Prupe.6G291700_v2.0.a1
pyrus_communis pycom04g15280
rosa_chinensis RchiOBHm_Chr3g0460801
rosa_laevigata RLG00000024980
rosa_multiflora Rmu_sc0007678.1_g000016
rosa_roxburghii Rroxscaffold_6G00419210
rosa_rugosa Rorug03G0046500
rosa_samantha Rh3AG103500 Rh3BG107200 Rh3CG109100 Rh3DG109000
rosa_wichuraiana Rw3G008810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 27
AclWI GGATC 1 cut(s) 328
AcoI YGGCCR 1 cut(s) 239
AfaI GTAC 2 cut(s) 66, 312
AfiI CCNNNNNNNGG 2 cut(s) 126, 431
AgsI TTSAA 2 cut(s) 41, 449
AjiI CACGTC 1 cut(s) 292
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
AlwI GGATC 1 cut(s) 328
AlwNI CAGNNNCTG 1 cut(s) 17
AoxI GGCC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 173
AvaII GGWCC 1 cut(s) 103
BalI TGGCCA 1 cut(s) 241
BccI CCATC 1 cut(s) 207
BlpI GCTNAGC 1 cut(s) 231
Bme18I GGWCC 1 cut(s) 103
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 105
BmsI GCATC 3 cut(s) 10, 106, 217
BpmI CTGGAG 1 cut(s) 450
Bpu1102I GCTNAGC 1 cut(s) 231
BsaAI YACGTR 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 68, 99
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 431
Bse1I ACTGG 1 cut(s) 242
BseDI CCNNGG 2 cut(s) 68, 99
BseGI GGATG 2 cut(s) 199, 232
BseLI CCNNNNNNNGG 2 cut(s) 126, 431
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 242
BseRI GAGGAG 1 cut(s) 287
BshFI GGCC 1 cut(s) 241
BslFI GGGAC 2 cut(s) 89, 389
BslI CCNNNNNNNGG 2 cut(s) 126, 431
BsmFI GGGAC 2 cut(s) 89, 389
BsnI GGCC 1 cut(s) 241
Bsp143I GATC 1 cut(s) 320
Bsp1720I GCTNAGC 1 cut(s) 231
Bsp19I CCATGG 1 cut(s) 68
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 105
BspPI GGATC 1 cut(s) 328
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 2 cut(s) 68, 99
BssMI GATC 1 cut(s) 320
BssT1I CCWWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 315
BstBAI YACGTR 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 426
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 1 cut(s) 68
BstENI CCTNNNNNAGG 1 cut(s) 429
BstF5I GGATG 2 cut(s) 199, 232
BstKTI GATC 1 cut(s) 323
BstMBI GATC 1 cut(s) 320
BstNSI RCATGY 2 cut(s) 251, 424
BstSNI TACGTA 1 cut(s) 190
BsuRI GGCC 1 cut(s) 241
BtgI CCRYGG 1 cut(s) 68
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 2 cut(s) 199, 232
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 2 cut(s) 156, 235
Cac8I GCNNGC 1 cut(s) 426
CaiI CAGNNNCTG 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 65, 311
CviAII CATG 5 cut(s) 69, 149, 248, 267, 421
CviJI RGCY 3 cut(s) 17, 73, 241
CviKI_1 RGCY 3 cut(s) 17, 73, 241
CviQI GTAC 2 cut(s) 65, 311
DdeI CTNAG 1 cut(s) 231
DpnI GATC 1 cut(s) 322
DpnII GATC 1 cut(s) 320
EaeI YGGCCR 1 cut(s) 239
Eco105I TACGTA 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 103
EcoNI CCTNNNNNAGG 1 cut(s) 429
EcoO109I RGGNCCY 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 68
FaeI CATG 5 cut(s) 72, 152, 251, 270, 424
FaqI GGGAC 2 cut(s) 89, 389
FatI CATG 5 cut(s) 68, 148, 247, 266, 420
FokI GGATG 2 cut(s) 186, 239
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 1 cut(s) 241
Hin1II CATG 5 cut(s) 72, 152, 251, 270, 424
HinfI GANTC 1 cut(s) 405
HphI GGTGA 1 cut(s) 173
Hpy188I TCNGA 3 cut(s) 100, 260, 283
Hpy188III TCNNGA 3 cut(s) 135, 203, 300
HpyCH4III ACNGT 1 cut(s) 315
HpyCH4IV ACGT 2 cut(s) 189, 291
HpyCH4V TGCA 2 cut(s) 148, 364
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 2 cut(s) 189, 291
Hsp92II CATG 5 cut(s) 72, 152, 251, 270, 424
Kzo9I GATC 1 cut(s) 320
LmnI GCTCC 2 cut(s) 14, 274
LpnPI CCDG 6 cut(s) 120, 216, 223, 285, 414, 438
LweI GCATC 3 cut(s) 10, 106, 217
MaeII ACGT 2 cut(s) 189, 291
MaeIII GTNAC 2 cut(s) 154, 292
MalI GATC 1 cut(s) 322
MboI GATC 1 cut(s) 320
MlsI TGGCCA 1 cut(s) 241
MluCI AATT 1 cut(s) 218
MluNI TGGCCA 1 cut(s) 241
MlyI GAGTC 1 cut(s) 414
MnlI CCTC 6 cut(s) 94, 120, 189, 265, 390, 425
Mox20I TGGCCA 1 cut(s) 241
MscI TGGCCA 1 cut(s) 241
Msp20I TGGCCA 1 cut(s) 241
NcoI CCATGG 1 cut(s) 68
NdeII GATC 1 cut(s) 320
NlaIII CATG 5 cut(s) 72, 152, 251, 270, 424
NlaIV GGNNCC 1 cut(s) 105
NmuCI GTSAC 2 cut(s) 154, 292
NspI RCATGY 2 cut(s) 251, 424
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
Ppu21I YACGTR 1 cut(s) 190
PpuMI RGGWCCY 1 cut(s) 103
PsiI TTATAA 1 cut(s) 27
Psp5II RGGWCCY 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 103
PspPPI RGGWCCY 1 cut(s) 103
PstNI CAGNNNCTG 1 cut(s) 17
RsaI GTAC 2 cut(s) 66, 312
RsaNI GTAC 2 cut(s) 65, 311
Sau3AI GATC 1 cut(s) 320
Sau96I GGNCC 1 cut(s) 103
SchI GAGTC 1 cut(s) 414
SetI ASST 8 cut(s) 19, 105, 131, 192, 294, 392, 436, 447
SfaNI GCATC 3 cut(s) 10, 106, 217
SinI GGWCC 1 cut(s) 103
SnaBI TACGTA 1 cut(s) 190
Sse9I AATT 1 cut(s) 218
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 315
TaiI ACGT 2 cut(s) 192, 294
TaqI TCGA 1 cut(s) 350
TasI AATT 1 cut(s) 218
TatI WGTACW 1 cut(s) 310
TscAI CASTG 2 cut(s) 163, 242
TseFI GTSAC 2 cut(s) 154, 292
Tsp45I GTSAC 2 cut(s) 154, 292
TspDTI ATGAA 1 cut(s) 200
TspRI CASTG 2 cut(s) 163, 242
VpaK11BI GGWCC 1 cut(s) 103
XagI CCTNNNNNAGG 1 cut(s) 429
XceI RCATGY 2 cut(s) 251, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.