MD11G1271600.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
38738723 .. 38739450
728 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1271600.v1.1.491

Sequence Viewer

Length: 156 bp
ATGGCGGGAAGTGGAAGGGGGTCGAGGTTCTCACTCCTGCTGCTCCCTCTGTTGATTTCTTTCTCCGTGCTGCCCTGCATATCTTTCGCTTACAAGCAAGGCGACATCGTCCCCATGAGCAAGATGGGCCTTTATCACTCTATCCATGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

5.58

Weight (kDa)

9.1

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013517)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 2 cut(s) 40, 70
AspS9I GGNCC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 27, 57
BccI CCATC 1 cut(s) 118
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BisI GCNGC 2 cut(s) 41, 71
BlsI GCNGC 2 cut(s) 42, 72
BmgT120I GGNCC 1 cut(s) 127
BseXI GCAGC 2 cut(s) 27, 57
BshFI GGCC 1 cut(s) 129
BslFI GGGAC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 1 cut(s) 129
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 129
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 27, 57
BsuRI GGCC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 127
CviAII CATG 2 cut(s) 115, 146
CviJI RGCY 1 cut(s) 129
CviKI_1 RGCY 1 cut(s) 129
FaeI CATG 2 cut(s) 118, 149
FaiI YATR 3 cut(s) 80, 116, 147
FaqI GGGAC 1 cut(s) 95
FatI CATG 2 cut(s) 114, 145
Fnu4HI GCNGC 2 cut(s) 41, 71
Fsp4HI GCNGC 2 cut(s) 41, 71
GluI GCNGC 2 cut(s) 41, 71
HaeIII GGCC 1 cut(s) 129
Hin1II CATG 2 cut(s) 118, 149
HpyAV CCTTC 1 cut(s) 9
HpyCH4V TGCA 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
Hsp92II CATG 2 cut(s) 118, 149
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 2 cut(s) 50, 88
Lsp1109I GCAGC 2 cut(s) 27, 57
MnlI CCTC 2 cut(s) 18, 57
MwoI GCNNNNNNNGC 1 cut(s) 126
NlaIII CATG 2 cut(s) 118, 149
PflFI GACNNNGTC 1 cut(s) 107
PkrI GCNGC 2 cut(s) 42, 72
PspPI GGNCC 1 cut(s) 127
PsyI GACNNNGTC 1 cut(s) 107
SatI GCNGC 2 cut(s) 41, 71
Sau96I GGNCC 1 cut(s) 127
SetI ASST 1 cut(s) 29
SgeI CNNG 9 cut(s) 18, 36, 49, 79, 87, 106, 110, 127, 133
SsiI CCGC 1 cut(s) 5
TaqI TCGA 1 cut(s) 23
TseI GCWGC 2 cut(s) 40, 70
TspGWI ACGGA 1 cut(s) 55
Tth111I GACNNNGTC 1 cut(s) 107
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.