Prupe.6G291700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013517
Physical Location & Seq
Forward (+)
26892592 .. 26895414
2823 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G291700.1

Sequence Viewer

Length: 675 bp
ATGGAGGGAACTGGAGGGAGATCAATTGTCTCGCTGTTTCTGATCCTTCTTTTGTCTTTGTCCATGTCCTGTATATCTGATGCTTACAGGCCAGGTGACATCGTCCCCATGAGCAAGACGGGTCTTTACCACTCTATGAAAACTGAATGGCACGACATGATCGGTCGACATTGCCCAATCTTTGCTGTGAATCGTGAGGTGTTGATTCCTATAGTGAAGCCGATGGGTTACACGGGTGCTGATGCCTACAAACTATCGTTTCAAGTTGGGAGAGAAAAGTTTTTAATCCCATGGCTTTTTGTGATAAATCGTAAGAGTTCTGAGGTTCCAATGATTGACGTCCATTTGAGGTACTCAGGAAGTGATTTGCATGGTGTCACTGCTAAAGTTGTGGATATGCCTCACCACTATGTAGAAATCCATCCAGACATTCGTAAACAATTTTGGGATCCTCAGCACTGGCCAAAGCATGTGCTGGTCAGATATACATGGCAGGAGCAATCAGAGATAGACGTGACTTCCGGATTTTATGTACTGTTTGGATCAGGTCTGATGCTTTCTTTTATTCTCTCAATATACATCTTGCAGTCATCGCGAGACAAATTGGCCAGGTTTGTGAGGGAGAGAGTTGCAGAAAGCAGCATGCCTGCTGGAGGTGTGGCAAAGGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

25.51

Weight (kDa)

8.48

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51610
fragaria_vesca FvH4_6g10100
malus_domestica MD04G1172900.v1.1 MD11G1271600.v1.1 MD12G1088300.v1.1 MD12G1186200.v1.1
prunus_persica Prupe.6G291700_v2.0.a1
pyrus_communis pycom04g15280
rosa_chinensis RchiOBHm_Chr3g0460801
rosa_laevigata RLG00000024980
rosa_multiflora Rmu_sc0007678.1_g000016
rosa_roxburghii Rroxscaffold_6G00419210
rosa_rugosa Rorug03G0046500
rosa_samantha Rh3AG103500 Rh3BG107200 Rh3CG109100 Rh3DG109000
rosa_wichuraiana Rw3G008810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 342
AccI GTMKAC 1 cut(s) 166
AccII CGCG 1 cut(s) 595
AccIII TCCGGA 1 cut(s) 521
AclWI GGATC 4 cut(s) 37, 443, 456, 550
AcoI YGGCCR 2 cut(s) 461, 606
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 2 cut(s) 353, 534
AfiI CCNNNNNNNGG 1 cut(s) 653
AgsI TTSAA 2 cut(s) 263, 671
AjiI CACGTC 1 cut(s) 514
AjnI CCWGG 2 cut(s) 91, 608
Alw26I GTCTC 2 cut(s) 34, 591
AlwI GGATC 4 cut(s) 37, 443, 456, 550
Aor13HI TCCGGA 1 cut(s) 521
AoxI GGCC 3 cut(s) 89, 461, 606
ApeKI GCWGC 1 cut(s) 639
AsuHPI GGTGA 2 cut(s) 107, 395
BalI TGGCCA 2 cut(s) 463, 608
BamHI GGATCC 1 cut(s) 448
BbvCI CCTCAGC 1 cut(s) 453
BbvI GCAGC 1 cut(s) 651
BccI CCATC 2 cut(s) 217, 429
BciT130I CCWGG 2 cut(s) 93, 610
BcoDI GTCTC 2 cut(s) 34, 591
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 1 cut(s) 640
BlsI GCNGC 1 cut(s) 641
Bme1390I CCNGG 2 cut(s) 93, 610
BmgBI CACGTC 1 cut(s) 514
BmiI GGNNCC 2 cut(s) 327, 450
BmrFI CCNGG 2 cut(s) 93, 610
BmsI GCATC 3 cut(s) 70, 232, 543
BpmI CTGGAG 2 cut(s) 33, 672
Bpu10I CCTNAGC 1 cut(s) 453
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 290
BsaWI WCCGGW 1 cut(s) 521
Bsc4I CCNNNNNNNGG 1 cut(s) 653
Bse1I ACTGG 2 cut(s) 16, 464
Bse3DI GCAATG 1 cut(s) 169
BseAI TCCGGA 1 cut(s) 521
BseBI CCWGG 2 cut(s) 93, 610
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 1 cut(s) 421
BseLI CCNNNNNNNGG 1 cut(s) 653
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 3 cut(s) 312, 369, 467
BseNI ACTGG 2 cut(s) 16, 464
BseXI GCAGC 1 cut(s) 651
Bsh1236I CGCG 1 cut(s) 595
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 3 cut(s) 91, 463, 608
BsiEI CGRYCG 1 cut(s) 166
BsiSI CCGG 1 cut(s) 522
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 653
BsmAI GTCTC 2 cut(s) 34, 591
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 3 cut(s) 91, 463, 608
Bsp13I TCCGGA 1 cut(s) 521
Bsp143I GATC 5 cut(s) 20, 42, 159, 448, 542
Bsp19I CCATGG 1 cut(s) 290
Bsp68I TCGCGA 1 cut(s) 595
BspANI GGCC 3 cut(s) 91, 463, 608
BspCNI CTCAG 3 cut(s) 313, 368, 466
BspEI TCCGGA 1 cut(s) 521
BspFNI CGCG 1 cut(s) 595
BspLI GGNNCC 2 cut(s) 327, 450
BspPI GGATC 4 cut(s) 37, 443, 456, 550
BsrDI GCAATG 1 cut(s) 169
BsrI ACTGG 2 cut(s) 16, 464
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 5 cut(s) 20, 42, 159, 448, 542
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 290
Bst2UI CCWGG 2 cut(s) 93, 610
Bst4CI ACNGT 1 cut(s) 537
BstACI GRCGYC 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 644, 648
BstDEI CTNAG 3 cut(s) 321, 355, 453
BstDSI CCRYGG 1 cut(s) 290
BstENI CCTNNNNNAGG 1 cut(s) 651
BstF5I GGATG 1 cut(s) 421
BstFNI CGCG 1 cut(s) 595
BstKTI GATC 5 cut(s) 23, 45, 162, 451, 545
BstMAI GTCTC 2 cut(s) 34, 591
BstMBI GATC 5 cut(s) 20, 42, 159, 448, 542
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 592
BstNI CCWGG 2 cut(s) 93, 610
BstNSI RCATGY 2 cut(s) 473, 646
BstSCI CCNGG 2 cut(s) 91, 608
BstSFI CTRYAG 1 cut(s) 210
BstUI CGCG 1 cut(s) 595
BstV1I GCAGC 1 cut(s) 651
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BsuRI GGCC 3 cut(s) 91, 463, 608
BtgI CCRYGG 1 cut(s) 290
BtgZI GCGATG 1 cut(s) 576
BtrI CACGTC 1 cut(s) 514
BtsCI GGATG 1 cut(s) 421
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 2 cut(s) 378, 457
BtuMI TCGCGA 1 cut(s) 595
Cac8I GCNNGC 2 cut(s) 644, 648
Csp6I GTAC 2 cut(s) 352, 533
CviAII CATG 8 cut(s) 64, 109, 157, 291, 371, 470, 489, 643
CviJI RGCY 5 cut(s) 91, 220, 295, 463, 608
CviKI_1 RGCY 5 cut(s) 91, 220, 295, 463, 608
CviQI GTAC 2 cut(s) 352, 533
DdeI CTNAG 3 cut(s) 321, 355, 453
DpnI GATC 5 cut(s) 22, 44, 161, 450, 544
DpnII GATC 5 cut(s) 20, 42, 159, 448, 542
EaeI YGGCCR 2 cut(s) 461, 606
Eco130I CCWWGG 1 cut(s) 290
EcoNI CCTNNNNNAGG 1 cut(s) 651
EcoRII CCWGG 2 cut(s) 91, 608
EcoT14I CCWWGG 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 290
FaeI CATG 8 cut(s) 67, 112, 160, 294, 374, 473, 492, 646
FaqI GGGAC 1 cut(s) 89
FatI CATG 8 cut(s) 63, 108, 156, 290, 370, 469, 488, 642
FblI GTMKAC 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 640
FokI GGATG 1 cut(s) 408
Fsp4HI GCNGC 1 cut(s) 640
GluI GCNGC 1 cut(s) 640
GsuI CTGGAG 2 cut(s) 33, 672
HaeIII GGCC 3 cut(s) 91, 463, 608
HapII CCGG 1 cut(s) 522
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 8 cut(s) 67, 112, 160, 294, 374, 473, 492, 646
HincII GTYRAC 1 cut(s) 167
HindII GTYRAC 1 cut(s) 167
HinfI GANTC 2 cut(s) 190, 205
HpaII CCGG 1 cut(s) 522
HphI GGTGA 2 cut(s) 107, 395
Hpy166II GTNNAC 2 cut(s) 167, 437
Hpy188I TCNGA 6 cut(s) 42, 79, 322, 482, 505, 552
Hpy188III TCNNGA 5 cut(s) 194, 357, 425, 522, 594
Hpy8I GTNNAC 2 cut(s) 167, 437
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 537
HpyCH4IV ACGT 2 cut(s) 339, 513
HpyCH4V TGCA 3 cut(s) 370, 586, 632
HpyF10VI GCNNNNNNNGC 1 cut(s) 592
HpyF3I CTNAG 3 cut(s) 321, 355, 453
HpySE526I ACGT 2 cut(s) 339, 513
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 8 cut(s) 67, 112, 160, 294, 374, 473, 492, 646
Kpn2I TCCGGA 1 cut(s) 521
Kzo9I GATC 5 cut(s) 20, 42, 159, 448, 542
LmnI GCTCC 1 cut(s) 496
Lsp1109I GCAGC 1 cut(s) 651
LweI GCATC 3 cut(s) 70, 232, 543
MaeII ACGT 2 cut(s) 339, 513
MaeIII GTNAC 4 cut(s) 95, 227, 376, 514
MalI GATC 5 cut(s) 22, 44, 161, 450, 544
MboI GATC 5 cut(s) 20, 42, 159, 448, 542
MfeI CAATTG 1 cut(s) 24
MflI RGATCY 1 cut(s) 448
MlsI TGGCCA 2 cut(s) 463, 608
MluCI AATT 3 cut(s) 24, 440, 602
MluNI TGGCCA 2 cut(s) 463, 608
MnlI CCTC 8 cut(s) 8, 190, 316, 342, 411, 462, 612, 647
Mox20I TGGCCA 2 cut(s) 463, 608
MroI TCCGGA 1 cut(s) 521
MscI TGGCCA 2 cut(s) 463, 608
MseI TTAA 1 cut(s) 284
MslI CAYNNNNRTG 1 cut(s) 408
Msp20I TGGCCA 2 cut(s) 463, 608
MspI CCGG 1 cut(s) 522
MspR9I CCNGG 2 cut(s) 93, 610
MunI CAATTG 1 cut(s) 24
MvaI CCWGG 2 cut(s) 93, 610
MvnI CGCG 1 cut(s) 595
MwoI GCNNNNNNNGC 1 cut(s) 592
NcoI CCATGG 1 cut(s) 290
NdeII GATC 5 cut(s) 20, 42, 159, 448, 542
NlaIII CATG 8 cut(s) 67, 112, 160, 294, 374, 473, 492, 646
NlaIV GGNNCC 2 cut(s) 327, 450
NmuCI GTSAC 3 cut(s) 95, 376, 514
NruI TCGCGA 1 cut(s) 595
NspI RCATGY 2 cut(s) 473, 646
PaeI GCATGC 1 cut(s) 646
PfeI GAWTC 2 cut(s) 190, 205
PflFI GACNNNGTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 641
Psp6I CCWGG 2 cut(s) 91, 608
PspGI CCWGG 2 cut(s) 91, 608
PspN4I GGNNCC 2 cut(s) 327, 450
PsuI RGATCY 1 cut(s) 448
PsyI GACNNNGTC 1 cut(s) 101
RruI TCGCGA 1 cut(s) 595
RsaI GTAC 2 cut(s) 353, 534
RsaNI GTAC 2 cut(s) 352, 533
RseI CAYNNNNRTG 1 cut(s) 408
SalI GTCGAC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 284
SatI GCNGC 1 cut(s) 640
Sau3AI GATC 5 cut(s) 20, 42, 159, 448, 542
ScrFI CCNGG 2 cut(s) 93, 610
SfaNI GCATC 3 cut(s) 70, 232, 543
SfcI CTRYAG 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 408
SphI GCATGC 1 cut(s) 646
Sse9I AATT 3 cut(s) 24, 440, 602
StyD4I CCNGG 2 cut(s) 91, 608
StyI CCWWGG 1 cut(s) 290
TaaI ACNGT 1 cut(s) 537
TaiI ACGT 2 cut(s) 342, 516
TaqI TCGA 1 cut(s) 166
TaqII GACCGA 1 cut(s) 152
TasI AATT 3 cut(s) 24, 440, 602
TatI WGTACW 1 cut(s) 532
TfiI GAWTC 2 cut(s) 190, 205
Tru1I TTAA 1 cut(s) 284
Tru9I TTAA 1 cut(s) 284
TscAI CASTG 2 cut(s) 385, 464
TseFI GTSAC 3 cut(s) 95, 376, 514
TseI GCWGC 1 cut(s) 639
Tsp45I GTSAC 3 cut(s) 95, 376, 514
TspDTI ATGAA 1 cut(s) 152
TspRI CASTG 2 cut(s) 385, 464
Tth111I GACNNNGTC 1 cut(s) 101
XagI CCTNNNNNAGG 1 cut(s) 651
XceI RCATGY 2 cut(s) 473, 646
XmiI GTMKAC 1 cut(s) 166
ZraI GACGTC 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.