FvH4_6g10100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013517
Physical Location & Seq
Reverse (-)
5978371 .. 5981728
3358 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10100.t1

Sequence Viewer

Length: 675 bp
ATGGCGGGAATCGGAGAGAGATCGATTCTCTCACTACTGCTTCTGATTCTCTCGTCTTTATCCATGCCCAGTTTCTCTGTTGCTTACAGGCCAGGTGACATCGTCCCCATGAGCAAGATGGGCCTCTACCACTCTATGAAAACCGACTGGCACGACATGATCGGAAGACATTGCCCGATCTTTGGTGTGAATCGTGAGGTGTTGATTCCTATAGCGATGCCCACGGGTTACACTGGAGCTGATGCTTACAAAATATCGTTTCAAGTTGGGAGAGAAAAGTTCTTGATTCCATGGCTTTATTTGATAAATCGTAAAAGCTCAGCGGTTCCGATGATTGATGTGCATTTGAGATACTCTGGGAGTGATTTGCATGGTGTCACCGCGAAAGTTGTGGACATGCCTCACCACTATGTAGAAATTCATCCGGATATTCGTAAACAATTTTGGGATCCTCAGAACTGGCCAAAGCATGTGCTGGTCAGATATACATGGGAGGAACAATCGGAGATAGATGTAACTTCTGGATTTTACGTACTATTTGGATCAGGTCTCACACTGTCTTTTATCCTCTCAATATACATCTTGCAATCATCACGGGACAAATTCGCAAGGTTTGTGATGGAGAGAGTTGCAGAAAGCAACATGCCTGCTGGAGGTGTGGCAAAGGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

25.41

Weight (kDa)

7.89

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51610
fragaria_vesca FvH4_6g10100
malus_domestica MD04G1172900.v1.1 MD11G1271600.v1.1 MD12G1088300.v1.1 MD12G1186200.v1.1
prunus_persica Prupe.6G291700_v2.0.a1
pyrus_communis pycom04g15280
rosa_chinensis RchiOBHm_Chr3g0460801
rosa_laevigata RLG00000024980
rosa_multiflora Rmu_sc0007678.1_g000016
rosa_roxburghii Rroxscaffold_6G00419210
rosa_rugosa Rorug03G0046500
rosa_samantha Rh3AG103500 Rh3BG107200 Rh3CG109100 Rh3DG109000
rosa_wichuraiana Rw3G008810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 383
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 3 cut(s) 5, 323, 381
AclWI GGATC 3 cut(s) 443, 456, 550
AcoI YGGCCR 1 cut(s) 461
AcsI RAATTY 2 cut(s) 417, 602
AfaI GTAC 1 cut(s) 534
AfiI CCNNNNNNNGG 2 cut(s) 182, 653
AgsI TTSAA 2 cut(s) 263, 671
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 2 cut(s) 239, 318
AluI AGCT 2 cut(s) 239, 318
Alw26I GTCTC 1 cut(s) 554
AlwI GGATC 3 cut(s) 443, 456, 550
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 3 cut(s) 89, 121, 461
ApoI RAATTY 2 cut(s) 417, 602
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 3 cut(s) 107, 370, 395
BalI TGGCCA 1 cut(s) 463
BamHI GGATCC 1 cut(s) 448
BbsI GAAGAC 1 cut(s) 172
BccI CCATC 2 cut(s) 112, 613
BciT130I CCWGG 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 554
BfmI CTRYAG 1 cut(s) 210
BlpI GCTNAGC 1 cut(s) 319
Bme1390I CCNGG 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 2 cut(s) 327, 450
BmrFI CCNGG 1 cut(s) 93
BmrI ACTGGG 1 cut(s) 63
BmsI GCATC 2 cut(s) 207, 232
BmuI ACTGGG 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 172
BpmI CTGGAG 2 cut(s) 255, 672
Bpu1102I GCTNAGC 1 cut(s) 319
Bsa29I ATCGAT 1 cut(s) 23
BsaAI YACGTR 1 cut(s) 532
BsaI GGTCTC 1 cut(s) 554
BsaJI CCNNGG 2 cut(s) 222, 290
BsaWI WCCGGW 1 cut(s) 424
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 653
Bse1I ACTGG 4 cut(s) 69, 152, 238, 464
Bse3DI GCAATG 1 cut(s) 169
BseAI TCCGGA 1 cut(s) 424
BseBI CCWGG 1 cut(s) 93
BseCI ATCGAT 1 cut(s) 23
BseDI CCNNGG 2 cut(s) 222, 290
BseGI GGATG 1 cut(s) 421
BseLI CCNNNNNNNGG 2 cut(s) 182, 653
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 2 cut(s) 333, 467
BseNI ACTGG 4 cut(s) 69, 152, 238, 464
Bsh1236I CGCG 1 cut(s) 383
BshFI GGCC 3 cut(s) 91, 123, 463
BshVI ATCGAT 1 cut(s) 23
BsiSI CCGG 1 cut(s) 425
BslFI GGGAC 2 cut(s) 89, 611
BslI CCNNNNNNNGG 2 cut(s) 182, 653
BsmAI GTCTC 1 cut(s) 554
BsmFI GGGAC 2 cut(s) 89, 611
BsnI GGCC 3 cut(s) 91, 123, 463
Bso31I GGTCTC 1 cut(s) 554
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 5 cut(s) 20, 159, 177, 448, 542
Bsp1720I GCTNAGC 1 cut(s) 319
Bsp19I CCATGG 1 cut(s) 290
BspACI CCGC 3 cut(s) 5, 323, 381
BspANI GGCC 3 cut(s) 91, 123, 463
BspCNI CTCAG 2 cut(s) 332, 466
BspDI ATCGAT 1 cut(s) 23
BspEI TCCGGA 1 cut(s) 424
BspFNI CGCG 1 cut(s) 383
BspLI GGNNCC 2 cut(s) 327, 450
BspPI GGATC 3 cut(s) 443, 456, 550
BspTNI GGTCTC 1 cut(s) 554
BsrDI GCAATG 1 cut(s) 169
BsrI ACTGG 4 cut(s) 69, 152, 238, 464
BssECI CCNNGG 2 cut(s) 222, 290
BssMI GATC 5 cut(s) 20, 159, 177, 448, 542
BssT1I CCWWGG 1 cut(s) 290
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 558
BstBAI YACGTR 1 cut(s) 532
BstC8I GCNNGC 1 cut(s) 648
BstDEI CTNAG 2 cut(s) 319, 453
BstDSI CCRYGG 2 cut(s) 222, 290
BstENI CCTNNNNNAGG 1 cut(s) 651
BstF5I GGATG 1 cut(s) 421
BstFNI CGCG 1 cut(s) 383
BstKTI GATC 5 cut(s) 23, 162, 180, 451, 545
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 5 cut(s) 20, 159, 177, 448, 542
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstNI CCWGG 1 cut(s) 93
BstNSI RCATGY 3 cut(s) 400, 473, 646
BstSCI CCNGG 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 210
BstSNI TACGTA 1 cut(s) 532
BstUI CGCG 1 cut(s) 383
BstV2I GAAGAC 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
Bsu15I ATCGAT 1 cut(s) 23
BsuRI GGCC 3 cut(s) 91, 123, 463
BsuTUI ATCGAT 1 cut(s) 23
BtgI CCRYGG 2 cut(s) 222, 290
BtgZI GCGATG 1 cut(s) 230
BtsCI GGATG 1 cut(s) 421
BtsIMutI CAGTG 2 cut(s) 231, 554
Cac8I GCNNGC 1 cut(s) 648
Cfr13I GGNCC 1 cut(s) 121
ClaI ATCGAT 1 cut(s) 23
Csp6I GTAC 1 cut(s) 533
CviAII CATG 9 cut(s) 64, 109, 157, 291, 371, 397, 470, 489, 643
CviJI RGCY 6 cut(s) 91, 123, 239, 295, 318, 463
CviKI_1 RGCY 6 cut(s) 91, 123, 239, 295, 318, 463
CviQI GTAC 1 cut(s) 533
DdeI CTNAG 2 cut(s) 319, 453
DpnI GATC 5 cut(s) 22, 161, 179, 450, 544
DpnII GATC 5 cut(s) 20, 159, 177, 448, 542
EaeI YGGCCR 1 cut(s) 461
Eco105I TACGTA 1 cut(s) 532
Eco130I CCWWGG 1 cut(s) 290
Eco31I GGTCTC 1 cut(s) 554
EcoNI CCTNNNNNAGG 1 cut(s) 651
EcoRII CCWGG 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 290
FaeI CATG 9 cut(s) 67, 112, 160, 294, 374, 400, 473, 492, 646
FaqI GGGAC 2 cut(s) 89, 611
FatI CATG 9 cut(s) 63, 108, 156, 290, 370, 396, 469, 488, 642
FokI GGATG 1 cut(s) 408
GsuI CTGGAG 2 cut(s) 255, 672
HaeIII GGCC 3 cut(s) 91, 123, 463
HapII CCGG 1 cut(s) 425
Hin1II CATG 9 cut(s) 67, 112, 160, 294, 374, 400, 473, 492, 646
HinfI GANTC 6 cut(s) 9, 25, 46, 190, 205, 286
HpaII CCGG 1 cut(s) 425
HphI GGTGA 3 cut(s) 107, 370, 395
Hpy166II GTNNAC 2 cut(s) 394, 437
Hpy188I TCNGA 7 cut(s) 14, 45, 164, 330, 456, 482, 505
Hpy188III TCNNGA 4 cut(s) 194, 283, 425, 522
Hpy8I GTNNAC 2 cut(s) 394, 437
HpyCH4III ACNGT 1 cut(s) 558
HpyCH4IV ACGT 1 cut(s) 531
HpyCH4V TGCA 4 cut(s) 343, 370, 586, 632
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 2 cut(s) 319, 453
HpySE526I ACGT 1 cut(s) 531
Hsp92II CATG 9 cut(s) 67, 112, 160, 294, 374, 400, 473, 492, 646
Kpn2I TCCGGA 1 cut(s) 424
Kzo9I GATC 5 cut(s) 20, 159, 177, 448, 542
LmnI GCTCC 1 cut(s) 236
LweI GCATC 2 cut(s) 207, 232
MaeII ACGT 1 cut(s) 531
MaeIII GTNAC 4 cut(s) 95, 227, 376, 514
MalI GATC 5 cut(s) 22, 161, 179, 450, 544
MboI GATC 5 cut(s) 20, 159, 177, 448, 542
MboII GAAGA 1 cut(s) 177
MflI RGATCY 1 cut(s) 448
MlsI TGGCCA 1 cut(s) 463
MluCI AATT 3 cut(s) 417, 440, 602
MluNI TGGCCA 1 cut(s) 463
MnlI CCTC 7 cut(s) 134, 190, 411, 462, 487, 578, 647
Mox20I TGGCCA 1 cut(s) 463
MroI TCCGGA 1 cut(s) 424
MscI TGGCCA 1 cut(s) 463
MslI CAYNNNNRTG 1 cut(s) 408
Msp20I TGGCCA 1 cut(s) 463
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 1 cut(s) 425
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
MvnI CGCG 1 cut(s) 383
MwoI GCNNNNNNNGC 1 cut(s) 120
NcoI CCATGG 1 cut(s) 290
NdeII GATC 5 cut(s) 20, 159, 177, 448, 542
NlaIII CATG 9 cut(s) 67, 112, 160, 294, 374, 400, 473, 492, 646
NlaIV GGNNCC 2 cut(s) 327, 450
NmuCI GTSAC 2 cut(s) 95, 376
NspI RCATGY 3 cut(s) 400, 473, 646
PfeI GAWTC 6 cut(s) 9, 25, 46, 190, 205, 286
PflFI GACNNNGTC 1 cut(s) 101
Ppu21I YACGTR 1 cut(s) 532
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 2 cut(s) 327, 450
PspPI GGNCC 1 cut(s) 121
PsuI RGATCY 1 cut(s) 448
PsyI GACNNNGTC 1 cut(s) 101
RsaI GTAC 1 cut(s) 534
RsaNI GTAC 1 cut(s) 533
RseI CAYNNNNRTG 1 cut(s) 408
Sau3AI GATC 5 cut(s) 20, 159, 177, 448, 542
Sau96I GGNCC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 93
SetI ASST 9 cut(s) 97, 201, 241, 320, 534, 550, 614, 658, 669
SfaNI GCATC 2 cut(s) 207, 232
SfcI CTRYAG 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 408
SnaBI TACGTA 1 cut(s) 532
Sse9I AATT 3 cut(s) 417, 440, 602
SsiI CCGC 3 cut(s) 5, 323, 381
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 1 cut(s) 290
TaaI ACNGT 1 cut(s) 558
TaiI ACGT 1 cut(s) 534
TaqI TCGA 1 cut(s) 23
TasI AATT 3 cut(s) 417, 440, 602
TfiI GAWTC 6 cut(s) 9, 25, 46, 190, 205, 286
TscAI CASTG 2 cut(s) 238, 561
TseFI GTSAC 2 cut(s) 95, 376
Tsp45I GTSAC 2 cut(s) 95, 376
TspDTI ATGAA 2 cut(s) 152, 410
TspRI CASTG 2 cut(s) 238, 561
Tth111I GACNNNGTC 1 cut(s) 101
XagI CCTNNNNNAGG 1 cut(s) 651
XapI RAATTY 2 cut(s) 417, 602
XceI RCATGY 3 cut(s) 400, 473, 646
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.