Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005620

Physical Location & Seq

Genomic Coordinates Forward (+)

19265141 .. 19266806

Gene Structure 1666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGATGAACCCGTTTCTCCCGGAAGGCTGCGATCCACCACCACCACCACAACCAATGGAGGGTTTACACGAAAATGCTCCACCTCCATTTCTGACCAAGACATTTGAGATGGTGGATGATCCAAACACTGACCACATCGTATCTTGGAACAGAGGAGGAACAAGTTTTGTCGTCTGGGATTTGCATTCTTTCTCCACGATTCTCCTTCCTCGTCATTTCAAACACAGCAATTTCTCAAGTTTCATCAGACAACTCAATACTTATGGTTTCAGAAAGATAGAAGCAGAGAGATGGGAATTTGCAAACGAAGAGTTTTTGTTAGGACAAAGACAGTTGTTGAAGAACATCAAGAGGAGAAACCCTTTTACTCCATCATCTTCACCAAGCCATGACGCTTGCAACGAGCTTCGCAGAGAGAAGCAAGTGCTAATGATGGAGATAGTGAGTCTAAGACAGCAGCAACAAACAACGAAAAGCTACATCAAAGCTATGGAACAGAGGATAGAAGGAACAGAGAGGAAACAGAGACAAATGATGTCGTTTCTGGCTAGAGCAATGCAGAGTCCTTCGTTTTTGCATCAGTTGTTGAAACAAAGAGATAAAAAAATTAAGGAGCTTGAGGATAATGAGTCAGCAAAGAGGAAAAGAGGTTCTTCTTCGATGTCGGAATTGGAAGTTTTGGCTTTGGAGATGCAAGGGCATGGAAAACAGAGGAATATGTTGGAAGAAGAGGATCATCAACTGGTGGTAGAGAGAGAGTTGGATGATGGTTTCTGGGAAGAGTTGCTTAGTGATGAGAGTTTGGCTTCCACCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0042802 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

272

Amino Acids

31.78

Weight (kDa)

6.03

Isoelectric Point (pI)

66.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	30 - 119	2.6e-29	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51910
fragaria_vesca	FvH4_2g23000 FvH4_2g23000
malus_domestica	MD03G1258300.v1.1 MD11G1278900.v1.1
prunus_persica	Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1
pyrus_communis	pycom03g20460 pycom11g24650
rosa_chinensis	RchiOBHm_Chr6g0290041
rosa_laevigata	RLG00000012252
rosa_multiflora	Rmu_co8347871.1_g000001 Rmu_sc0002902.1_g000045 Rmu_sc0003927.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177400
rosa_rugosa	Rorug06G0208300 Rorug06G0208400
rosa_samantha	Rh6AG319900 Rh6BG327000 Rh6CG332800 Rh6DG318700
rosa_wichuraiana	Rw6G027600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	26, 113, 741
AcsI	RAATTY	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	220, 340, 589
AloI	GAACNNNNNNTCC	2 cut(s)	634, 666
AluBI	AGCT	4 cut(s)	406, 477, 488, 616
AluI	AGCT	4 cut(s)	406, 477, 488, 616
Alw26I	GTCTC	1 cut(s)	520
AlwI	GGATC	3 cut(s)	26, 113, 741
ApeKI	GCWGC	2 cut(s)	27, 457
ApoI	RAATTY	1 cut(s)	296
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	372
BbvI	GCAGC	2 cut(s)	14, 469
BccI	CCATC	5 cut(s)	103, 285, 379, 427, 761
BcnI	CCSGG	1 cut(s)	20
BcoDI	GTCTC	1 cut(s)	520
BfaI	CTAG	1 cut(s)	549
BisI	GCNGC	2 cut(s)	28, 458
BlsI	GCNGC	2 cut(s)	29, 459
Bme1390I	CCNGG	1 cut(s)	20
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	2 cut(s)	586, 681
BpuEI	CTTGAG	2 cut(s)	220, 638
BpuMI	CCSGG	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	747
Bse3DI	GCAATG	1 cut(s)	561
BseGI	GGATG	2 cut(s)	121, 769
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMI	GCAATG	1 cut(s)	561
BseNI	ACTGG	1 cut(s)	747
BseRI	GAGGAG	2 cut(s)	168, 367
BseXI	GCAGC	2 cut(s)	14, 469
BsiSI	CCGG	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	520
BsmI	GAATGC	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	31, 118, 733
BspPI	GGATC	3 cut(s)	26, 113, 741
BsrDI	GCAATG	1 cut(s)	561
BsrI	ACTGG	1 cut(s)	747
BssMI	GATC	3 cut(s)	31, 118, 733
Bst4CI	ACNGT	1 cut(s)	333
Bst6I	CTCTTC	3 cut(s)	303, 723, 774
BstC8I	GCNNGC	1 cut(s)	397
BstDEI	CTNAG	2 cut(s)	449, 788
BstF5I	GGATG	2 cut(s)	121, 769
BstKTI	GATC	3 cut(s)	34, 121, 736
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	3 cut(s)	31, 118, 733
BstSCI	CCNGG	1 cut(s)	18
BstV1I	GCAGC	2 cut(s)	14, 469
BtsCI	GGATG	2 cut(s)	121, 769
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	397
CseI	GACGC	1 cut(s)	401
CviAII	CATG	2 cut(s)	389, 701
CviJI	RGCY	9 cut(s)	27, 387, 406, 477, 488, 548, 616, 683, 806
CviKI_1	RGCY	9 cut(s)	27, 387, 406, 477, 488, 548, 616, 683, 806
DdeI	CTNAG	2 cut(s)	449, 788
DpnI	GATC	3 cut(s)	33, 120, 735
DpnII	GATC	3 cut(s)	31, 118, 733
Eam1104I	CTCTTC	3 cut(s)	303, 723, 774
EarI	CTCTTC	3 cut(s)	303, 723, 774
FaeI	CATG	2 cut(s)	392, 704
FaiI	YATR	5 cut(s)	264, 390, 491, 702, 719
FalI	AAGNNNNNCTT	4 cut(s)	637, 669, 771, 803
FatI	CATG	2 cut(s)	388, 700
Fnu4HI	GCNGC	2 cut(s)	28, 458
FokI	GGATG	2 cut(s)	128, 776
Fsp4HI	GCNGC	2 cut(s)	28, 458
FspBI	CTAG	1 cut(s)	549
GluI	GCNGC	2 cut(s)	28, 458
HapII	CCGG	1 cut(s)	20
HgaI	GACGC	1 cut(s)	401
Hin1II	CATG	2 cut(s)	392, 704
HinfI	GANTC	4 cut(s)	199, 445, 562, 629
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	1 cut(s)	372
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	4 cut(s)	93, 248, 272, 667
Hpy188III	TCNNGA	1 cut(s)	349
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	4 cut(s)	17, 215, 500, 576
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4V	TGCA	6 cut(s)	184, 302, 399, 559, 577, 694
HpyF3I	CTNAG	2 cut(s)	449, 788
Hsp92II	CATG	2 cut(s)	392, 704
Kzo9I	GATC	3 cut(s)	31, 118, 733
LmnI	GCTCC	2 cut(s)	82, 613
LpnPI	CCDG	5 cut(s)	33, 160, 530, 728, 760
Lsp1109I	GCAGC	2 cut(s)	14, 469
LweI	GCATC	2 cut(s)	586, 681
MaeI	CTAG	1 cut(s)	549
MalI	GATC	3 cut(s)	33, 120, 735
MboI	GATC	3 cut(s)	31, 118, 733
MboII	GAAGA	8 cut(s)	320, 352, 369, 645, 648, 737, 740, 791
MluCI	AATT	4 cut(s)	229, 296, 606, 668
MlyI	GAGTC	3 cut(s)	454, 571, 638
MmeI	TCCRAC	3 cut(s)	645, 702, 741
MseI	TTAA	1 cut(s)	609
MslI	CAYNNNNRTG	1 cut(s)	72
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	184
NciI	CCSGG	1 cut(s)	20
NdeII	GATC	3 cut(s)	31, 118, 733
NlaIII	CATG	2 cut(s)	392, 704
PcsI	WCGNNNNNNNCGW	1 cut(s)	399
PctI	GAATGC	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	199
PfoI	TCCNGGA	1 cut(s)	18
PkrI	GCNGC	2 cut(s)	29, 459
PleI	GAGTC	3 cut(s)	453, 570, 637
PpsI	GAGTC	3 cut(s)	453, 570, 637
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	2 cut(s)	28, 458
Sau3AI	GATC	3 cut(s)	31, 118, 733
SchI	GAGTC	3 cut(s)	454, 571, 638
ScrFI	CCNGG	1 cut(s)	20
SetI	ASST	7 cut(s)	85, 408, 479, 490, 618, 652, 815
SfaNI	GCATC	2 cut(s)	586, 681
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	2 cut(s)	235, 617
SmoI	CTYRAG	2 cut(s)	235, 617
Sse9I	AATT	4 cut(s)	229, 296, 606, 668
SspMI	CTAG	1 cut(s)	549
StyD4I	CCNGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	333
TaqI	TCGA	1 cut(s)	659
TasI	AATT	4 cut(s)	229, 296, 606, 668
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	2 cut(s)	27, 457
TspDTI	ATGAA	2 cut(s)	20, 232
TspRI	CASTG	1 cut(s)	133
XapI	RAATTY	1 cut(s)	296
XspI	CTAG	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.