Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8347871.1

Orthogroup ID

OG0005620

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1001

Gene Structure 1000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8347871.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 625 bp

atgacggtggctccaccgcagccgatggaggggctgaatgacaccgggcctcctccatttctgaacaagacttatgacatggtggatgacccgagtactaatcggatagtctcgtggagcagaggagggggcagctttgtggtttgggaccctcattcgtttgtgatgaacctcctgcctagatacttcaagcacaataatttctccagctttgtcaggcagcttaacacttacggctttagaaaggttgatccggataggtgggagtttgccaatgaaggatttttaaggggtcagaagcatctcctaaagaacattaggagaaggaagacaccttctcagcctattccagcacaccaagcgctaggcccttgtgtggaagtaggccggtttgggctagatggagaagttgatcgtttgcgacgtgacaagcaggttctcatgatggagttggtgaagcttagacagcagcagcagagtactagagcttgccttcaagccatggaacaaaggctaaaagggacagaaatgaagcagcaacaaatgatggctttcttggccagggcactgcagaacccggctttcctgcagcagctagtccaacataaggagaaacggaaggagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0042802 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

208

Amino Acids

24.18

Weight (kDa)

10.1

Isoelectric Point (pI)

54.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51910
fragaria_vesca	FvH4_2g23000 FvH4_2g23000
malus_domestica	MD03G1258300.v1.1 MD11G1278900.v1.1
prunus_persica	Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1
pyrus_communis	pycom03g20460 pycom11g24650
rosa_chinensis	RchiOBHm_Chr6g0290041
rosa_laevigata	RLG00000012252
rosa_multiflora	Rmu_co8347871.1_g000001 Rmu_sc0002902.1_g000045 Rmu_sc0003927.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177400
rosa_rugosa	Rorug06G0208300 Rorug06G0208400
rosa_samantha	Rh6AG319900 Rh6BG327000 Rh6CG332800 Rh6DG318700
rosa_wichuraiana	Rw6G027600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
AccIII	TCCGGA	1 cut(s)	253
AciI	CCGC	1 cut(s)	17
AclWI	GGATC	1 cut(s)	245
AcoI	YGGCCR	1 cut(s)	558
AfaI	GTAC	2 cut(s)	97, 481
AfeI	AGCGCT	1 cut(s)	363
AfiI	CCNNNNNNNGG	3 cut(s)	29, 376, 607
AgsI	TTSAA	2 cut(s)	190, 497
AjiI	CACGTC	1 cut(s)	425
AjnI	CCWGG	1 cut(s)	560
AluBI	AGCT	6 cut(s)	135, 210, 223, 460, 488, 595
AluI	AGCT	6 cut(s)	135, 210, 223, 460, 488, 595
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	245
Ama87I	CYCGRG	1 cut(s)	91
Aor13HI	TCCGGA	1 cut(s)	253
Aor51HI	AGCGCT	1 cut(s)	363
AoxI	GGCC	4 cut(s)	47, 367, 385, 558
ApeKI	GCWGC	8 cut(s)	19, 132, 220, 469, 472, 535, 589, 592
AspLEI	GCGC	1 cut(s)	364
AspS9I	GGNCC	3 cut(s)	47, 148, 368
AsuC2I	CCSGG	2 cut(s)	46, 578
AsuHPI	GGTGA	1 cut(s)	466
AvaI	CYCGRG	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	568
BalI	TGGCCA	1 cut(s)	560
BauI	CACGAG	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	335
BbvI	GCAGC	8 cut(s)	31, 144, 232, 481, 484, 547, 601, 604
BccI	CCATC	4 cut(s)	19, 395, 439, 541
BceAI	ACGGC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	562
BcnI	CCSGG	2 cut(s)	46, 578
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	5 cut(s)	180, 365, 398, 483, 596
BfmI	CTRYAG	2 cut(s)	569, 587
BfoI	RGCGCY	1 cut(s)	365
BfuAI	ACCTGC	1 cut(s)	424
BisI	GCNGC	8 cut(s)	20, 133, 221, 470, 473, 536, 590, 593
BlsI	GCNGC	8 cut(s)	21, 134, 222, 471, 474, 537, 591, 594
BmcAI	AGTACT	2 cut(s)	97, 481
Bme1390I	CCNGG	3 cut(s)	46, 562, 578
Bme18I	GGWCC	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	91
BmgBI	CACGTC	1 cut(s)	425
BmgT120I	GGNCC	3 cut(s)	47, 148, 368
BmiI	GGNNCC	3 cut(s)	12, 149, 150
BmrFI	CCNGG	3 cut(s)	46, 562, 578
BmsI	GCATC	1 cut(s)	310
BpiI	GAAGAC	1 cut(s)	335
BpmI	CTGGAG	1 cut(s)	190
BpuMI	CCSGG	2 cut(s)	46, 578
BsaJI	CCNNGG	2 cut(s)	501, 561
BsaWI	WCCGGW	1 cut(s)	253
BsaXI	ACNNNNNCTCC	3 cut(s)	25, 34, 64
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 376, 607
Bse118I	RCCGGY	1 cut(s)	387
BseAI	TCCGGA	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	562
BseDI	CCNNGG	2 cut(s)	501, 561
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	3 cut(s)	29, 376, 607
BseMII	CTCAG	1 cut(s)	353
BseRI	GAGGAG	2 cut(s)	42, 138
BseSI	GKGCMC	1 cut(s)	568
BseXI	GCAGC	8 cut(s)	31, 144, 232, 481, 484, 547, 601, 604
BshFI	GGCC	4 cut(s)	49, 369, 387, 560
BsiHKCI	CYCGRG	1 cut(s)	91
BsiSI	CCGG	4 cut(s)	45, 254, 388, 578
BslFI	GGGAC	2 cut(s)	161, 535
BslI	CCNNNNNNNGG	3 cut(s)	29, 376, 607
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	2 cut(s)	161, 535
BsnI	GGCC	4 cut(s)	49, 369, 387, 560
BsoBI	CYCGRG	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	568
Bsp13I	TCCGGA	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	250, 412
Bsp19I	CCATGG	1 cut(s)	501
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	4 cut(s)	49, 369, 387, 560
BspCNI	CTCAG	1 cut(s)	352
BspEI	TCCGGA	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	441
BspLI	GGNNCC	3 cut(s)	12, 149, 150
BspMAI	CTGCAG	2 cut(s)	573, 591
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	387
BssAI	RCCGGY	1 cut(s)	387
BssECI	CCNNGG	2 cut(s)	501, 561
BssMI	GATC	2 cut(s)	250, 412
BssSI	CACGAG	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	562
Bst4CI	ACNGT	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	2 cut(s)	339, 461
BstDSI	CCRYGG	1 cut(s)	501
BstF5I	GGATG	1 cut(s)	91
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	2 cut(s)	253, 415
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	2 cut(s)	250, 412
BstMWI	GCNNNNNNNGC	3 cut(s)	359, 466, 557
BstNI	CCWGG	1 cut(s)	562
BstSCI	CCNGG	3 cut(s)	44, 560, 576
BstSFI	CTRYAG	2 cut(s)	569, 587
BstSLI	GKGCMC	1 cut(s)	568
BstV1I	GCAGC	8 cut(s)	31, 144, 232, 481, 484, 547, 601, 604
BstV2I	GAAGAC	1 cut(s)	335
BsuRI	GGCC	4 cut(s)	49, 369, 387, 560
BtgI	CCRYGG	1 cut(s)	501
BtrI	CACGTC	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	566
BtsIMutI	CAGTG	1 cut(s)	566
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	1 cut(s)	490
CciI	TCATGA	1 cut(s)	441
CfoI	GCGC	1 cut(s)	364
Cfr10I	RCCGGY	1 cut(s)	387
Cfr13I	GGNCC	3 cut(s)	47, 148, 368
Csp6I	GTAC	2 cut(s)	96, 480
CviAII	CATG	3 cut(s)	79, 442, 502
CviQI	GTAC	2 cut(s)	96, 480
DdeI	CTNAG	2 cut(s)	339, 461
DpnI	GATC	2 cut(s)	252, 414
DpnII	GATC	2 cut(s)	250, 412
EaeI	YGGCCR	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	148
Eco47III	AGCGCT	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	91
EcoO109I	RGGNCCY	2 cut(s)	148, 368
EcoRII	CCWGG	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	501
FaeI	CATG	3 cut(s)	82, 445, 505
FaiI	YATR	5 cut(s)	75, 80, 443, 503, 606
FaqI	GGGAC	2 cut(s)	161, 535
FatI	CATG	3 cut(s)	78, 441, 501
Fnu4HI	GCNGC	8 cut(s)	20, 133, 221, 470, 473, 536, 590, 593
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	8 cut(s)	20, 133, 221, 470, 473, 536, 590, 593
FspBI	CTAG	5 cut(s)	180, 365, 398, 483, 596
GlaI	GCGC	1 cut(s)	363
GluI	GCNGC	8 cut(s)	20, 133, 221, 470, 473, 536, 590, 593
GsuI	CTGGAG	1 cut(s)	190
HaeII	RGCGCY	1 cut(s)	365
HaeIII	GGCC	4 cut(s)	49, 369, 387, 560
HapII	CCGG	4 cut(s)	45, 254, 388, 578
HhaI	GCGC	1 cut(s)	364
Hin1II	CATG	3 cut(s)	82, 445, 505
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HindIII	AAGCTT	1 cut(s)	458
HpaII	CCGG	4 cut(s)	45, 254, 388, 578
HphI	GGTGA	1 cut(s)	466
Hpy188I	TCNGA	3 cut(s)	63, 105, 297
Hpy188III	TCNNGA	2 cut(s)	254, 442
Hpy99I	CGWCG	1 cut(s)	426
HpyAV	CCTTC	5 cut(s)	272, 318, 345, 503, 613
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	2 cut(s)	571, 589
HpyF10VI	GCNNNNNNNGC	3 cut(s)	359, 466, 557
HpyF3I	CTNAG	2 cut(s)	339, 461
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	3 cut(s)	82, 445, 505
HspAI	GCGC	1 cut(s)	362
KflI	GGGWCCC	1 cut(s)	148
Kpn2I	TCCGGA	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	250, 412
LmnI	GCTCC	3 cut(s)	16, 117, 622
Lsp1109I	GCAGC	8 cut(s)	31, 144, 232, 481, 484, 547, 601, 604
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	5 cut(s)	180, 365, 398, 483, 596
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	2 cut(s)	252, 414
MboI	GATC	2 cut(s)	250, 412
MboII	GAAGA	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	568
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	1 cut(s)	199
MluNI	TGGCCA	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	625
MnlI	CCTC	7 cut(s)	22, 60, 63, 116, 119, 162, 182
Mox20I	TGGCCA	1 cut(s)	560
MroI	TCCGGA	1 cut(s)	253
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	2 cut(s)	225, 287
Msp20I	TGGCCA	1 cut(s)	560
MspI	CCGG	4 cut(s)	45, 254, 388, 578
MspR9I	CCNGG	3 cut(s)	46, 562, 578
MvaI	CCWGG	1 cut(s)	562
MwoI	GCNNNNNNNGC	3 cut(s)	359, 466, 557
NciI	CCSGG	2 cut(s)	46, 578
NcoI	CCATGG	1 cut(s)	501
NdeII	GATC	2 cut(s)	250, 412
NlaIII	CATG	3 cut(s)	82, 445, 505
NlaIV	GGNNCC	3 cut(s)	12, 149, 150
NmuCI	GTSAC	1 cut(s)	425
PagI	TCATGA	1 cut(s)	441
PcsI	WCGNNNNNNNCGW	1 cut(s)	421
PkrI	GCNGC	8 cut(s)	21, 134, 222, 471, 474, 537, 591, 594
PpuMI	RGGWCCY	1 cut(s)	148
Psp5II	RGGWCCY	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	560
PspN4I	GGNNCC	3 cut(s)	12, 149, 150
PspPI	GGNCC	3 cut(s)	47, 148, 368
PspPPI	RGGWCCY	1 cut(s)	148
PstI	CTGCAG	2 cut(s)	573, 591
RsaI	GTAC	2 cut(s)	97, 481
RsaNI	GTAC	2 cut(s)	96, 480
SaqAI	TTAA	2 cut(s)	225, 287
SatI	GCNGC	8 cut(s)	20, 133, 221, 470, 473, 536, 590, 593
Sau3AI	GATC	2 cut(s)	250, 412
Sau96I	GGNCC	3 cut(s)	47, 148, 368
ScaI	AGTACT	2 cut(s)	97, 481
ScrFI	CCNGG	3 cut(s)	46, 562, 578
SduI	GDGCHC	1 cut(s)	568
SfaNI	GCATC	1 cut(s)	310
SfcI	CTRYAG	2 cut(s)	569, 587
SinI	GGWCC	1 cut(s)	148
Sse9I	AATT	1 cut(s)	199
SsiI	CCGC	1 cut(s)	17
SspMI	CTAG	5 cut(s)	180, 365, 398, 483, 596
StyD4I	CCNGG	3 cut(s)	44, 560, 576
StyI	CCWWGG	1 cut(s)	501
TaaI	ACNGT	1 cut(s)	7
TaiI	ACGT	1 cut(s)	427
TasI	AATT	1 cut(s)	199
TatI	WGTACW	2 cut(s)	95, 479
Tru1I	TTAA	2 cut(s)	225, 287
Tru9I	TTAA	2 cut(s)	225, 287
TscAI	CASTG	1 cut(s)	573
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	8 cut(s)	19, 132, 220, 469, 472, 535, 589, 592
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	3 cut(s)	182, 291, 545
TspRI	CASTG	1 cut(s)	573
VpaK11BI	GGWCC	1 cut(s)	148
XspI	CTAG	5 cut(s)	180, 365, 398, 483, 596
ZrmI	AGTACT	2 cut(s)	97, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.