Rmu_sc0003927.1_g000002

Heat Stress Transcription Factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003927.1
Physical Location & Seq
Forward (+)
4368 .. 5717
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003927.1_g000002.1.cds

Sequence Viewer

Length: 975 bp
atgaattacttgtacccagtgaaggacgagtacccgggcgggtcgagttcatcgcagtggagcggggatcctctgatgacggtggctccaccgcagccgatggaggggctgaatgacaccgggcctcctccatttctgaacaagacttatgacatggtggatgacccgagtactaatcggatagtctcgtggagcagaggagggggcagctttgtggtttgggaccctcattcgtttgtgatgaacctcctgcctagatacttcaagcacaataatttctccagctttgtcaggcagcttaacacttacggctttagaaaggttgatccggataggtgggagtttgccaatgaaggatttttaaggggtcagaagcatctcctaaagaacattaggagaaggaagacaccttctcagcctattccagcacaccaagcgctaggcccttgtgtggaagtaggccggtttgggctagatggagaagttgatcgtttgcgacgtgacaagcaggttctcatgatggagttggtgaagcttagacagcagcagcagagtactagagcttgccttcaagccatggaacaaaggctaaaagggacagaaatgaagcagcaacaaatgatggctttcttggccagggcactccagaacccggctttcctgcagcagctagtccaacataaggagaaacggaaggagctcgaagaagccgtgactaagaaaaggagaaggcccattgatcaaggccctagtggctttggtggtggtgaaactaaccaaaggggcaaaggaattaaccctgttaaagctgagcctcttgaatttggagatggtgagtatgaaatgtcggagctagaagcgcttgcaatggaaatgcaaggatttcataaggcaagaaaggaaccggaggaagagtcagagctcctggaaattggggataaagagcttgatgaaggattttgggagtctttatga

Protein Analysis

324

Amino Acids

37.13

Weight (kDa)

6.64

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 499
AccBSI CCGCTC 1 cut(s) 63
AccIII TCCGGA 1 cut(s) 328
AciI CCGC 3 cut(s) 39, 63, 92
AclWI GGATC 3 cut(s) 62, 75, 320
AcoI YGGCCR 1 cut(s) 633
AcsI RAATTY 1 cut(s) 821
AfaI GTAC 4 cut(s) 14, 32, 172, 556
AfeI AGCGCT 2 cut(s) 438, 861
AfiI CCNNNNNNNGG 5 cut(s) 22, 104, 451, 652, 682
AgsI TTSAA 3 cut(s) 265, 572, 821
AjiI CACGTC 1 cut(s) 500
AjnI CCWGG 2 cut(s) 635, 924
Alw21I GWGCWC 2 cut(s) 702, 924
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 3 cut(s) 62, 75, 320
Ama87I CYCGRG 2 cut(s) 34, 166
Aor13HI TCCGGA 1 cut(s) 328
Aor51HI AGCGCT 2 cut(s) 438, 861
AoxI GGCC 6 cut(s) 122, 442, 460, 633, 731, 745
ApeKI GCWGC 8 cut(s) 94, 207, 295, 544, 547, 610, 664, 667
ApoI RAATTY 1 cut(s) 821
AspLEI GCGC 2 cut(s) 439, 862
AspS9I GGNCC 5 cut(s) 122, 223, 443, 732, 746
AsuC2I CCSGG 4 cut(s) 35, 36, 121, 653
AsuHPI GGTGA 3 cut(s) 541, 779, 845
AvaI CYCGRG 2 cut(s) 34, 166
AvaII GGWCC 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 643
BalI TGGCCA 1 cut(s) 635
BamHI GGATCC 1 cut(s) 67
BanII GRGCYC 2 cut(s) 702, 924
BarI GAAGNNNNNNTAC 2 cut(s) 14, 46
BauI CACGAG 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 410
Bbv12I GWGCWC 2 cut(s) 702, 924
BbvI GCAGC 8 cut(s) 106, 219, 307, 556, 559, 622, 676, 679
BccI CCATC 5 cut(s) 94, 470, 514, 616, 824
BceAI ACGGC 2 cut(s) 325, 695
BciT130I CCWGG 2 cut(s) 637, 926
BclI TGATCA 1 cut(s) 739
BcnI CCSGG 4 cut(s) 35, 36, 121, 653
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 7 cut(s) 255, 440, 473, 558, 671, 750, 854
BfmI CTRYAG 1 cut(s) 662
BfoI RGCGCY 2 cut(s) 440, 863
BfuAI ACCTGC 1 cut(s) 499
BglI GCCNNNNNGGC 1 cut(s) 753
BisI GCNGC 8 cut(s) 95, 208, 296, 545, 548, 611, 665, 668
BlpI GCTNAGC 1 cut(s) 810
BlsI GCNGC 8 cut(s) 96, 209, 297, 546, 549, 612, 666, 669
BmcAI AGTACT 2 cut(s) 172, 556
Bme1390I CCNGG 6 cut(s) 35, 36, 121, 637, 653, 926
Bme18I GGWCC 1 cut(s) 223
BmeT110I CYCGRG 2 cut(s) 34, 166
BmgBI CACGTC 1 cut(s) 500
BmgT120I GGNCC 5 cut(s) 122, 223, 443, 732, 746
BmiI GGNNCC 5 cut(s) 69, 87, 224, 225, 903
BmrFI CCNGG 6 cut(s) 35, 36, 121, 637, 653, 926
BmrI ACTGGG 1 cut(s) 11
BmsI GCATC 1 cut(s) 385
BmuI ACTGGG 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 410
BpmI CTGGAG 2 cut(s) 265, 629
Bpu1102I GCTNAGC 1 cut(s) 810
BpuMI CCSGG 4 cut(s) 35, 36, 121, 653
BsaJI CCNNGG 3 cut(s) 34, 576, 636
BsaWI WCCGGW 2 cut(s) 328, 904
BsaXI ACNNNNNCTCC 6 cut(s) 70, 100, 109, 139, 899, 929
Bsc4I CCNNNNNNNGG 5 cut(s) 22, 104, 451, 652, 682
Bse118I RCCGGY 1 cut(s) 462
Bse1I ACTGG 1 cut(s) 17
Bse3DI GCAATG 1 cut(s) 873
BseAI TCCGGA 1 cut(s) 328
BseBI CCWGG 2 cut(s) 637, 926
BseDI CCNNGG 3 cut(s) 34, 576, 636
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 5 cut(s) 22, 104, 451, 652, 682
BseMI GCAATG 1 cut(s) 873
BseMII CTCAG 2 cut(s) 428, 801
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 2 cut(s) 117, 213
BseSI GKGCMC 1 cut(s) 643
BseXI GCAGC 8 cut(s) 106, 219, 307, 556, 559, 622, 676, 679
BshFI GGCC 6 cut(s) 124, 444, 462, 635, 733, 747
BsiHKAI GWGCWC 2 cut(s) 702, 924
BsiHKCI CYCGRG 2 cut(s) 34, 166
BsiSI CCGG 6 cut(s) 35, 120, 329, 463, 653, 905
BslFI GGGAC 2 cut(s) 236, 610
BslI CCNNNNNNNGG 5 cut(s) 22, 104, 451, 652, 682
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 2 cut(s) 236, 610
BsnI GGCC 6 cut(s) 124, 444, 462, 635, 733, 747
BsoBI CYCGRG 2 cut(s) 34, 166
Bsp1286I GDGCHC 3 cut(s) 643, 702, 924
Bsp13I TCCGGA 1 cut(s) 328
Bsp143I GATC 4 cut(s) 67, 325, 487, 739
Bsp1720I GCTNAGC 1 cut(s) 810
Bsp19I CCATGG 1 cut(s) 576
BspACI CCGC 3 cut(s) 39, 63, 92
BspANI GGCC 6 cut(s) 124, 444, 462, 635, 733, 747
BspCNI CTCAG 2 cut(s) 427, 802
BspEI TCCGGA 1 cut(s) 328
BspHI TCATGA 1 cut(s) 516
BspLI GGNNCC 5 cut(s) 69, 87, 224, 225, 903
BspMAI CTGCAG 1 cut(s) 666
BspMI ACCTGC 1 cut(s) 499
BspPI GGATC 3 cut(s) 62, 75, 320
BsrBI CCGCTC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 873
BsrFI RCCGGY 1 cut(s) 462
BsrI ACTGG 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 462
BssECI CCNNGG 3 cut(s) 34, 576, 636
BssMI GATC 4 cut(s) 67, 325, 487, 739
BssSI CACGAG 1 cut(s) 187
BssT1I CCWWGG 1 cut(s) 576
Bst2BI CACGAG 1 cut(s) 187
Bst2UI CCWGG 2 cut(s) 637, 926
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 906
BstC8I GCNNGC 2 cut(s) 565, 864
BstDEI CTNAG 4 cut(s) 414, 536, 717, 810
BstDSI CCRYGG 1 cut(s) 576
BstF5I GGATG 1 cut(s) 166
BstH2I RGCGCY 2 cut(s) 440, 863
BstHHI GCGC 2 cut(s) 439, 862
BstKTI GATC 4 cut(s) 70, 328, 490, 742
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 4 cut(s) 67, 325, 487, 739
BstMWI GCNNNNNNNGC 5 cut(s) 434, 541, 632, 753, 859
BstNI CCWGG 2 cut(s) 637, 926
BstSCI CCNGG 6 cut(s) 33, 34, 119, 635, 651, 924
BstSFI CTRYAG 1 cut(s) 662
BstSLI GKGCMC 1 cut(s) 643
BstV1I GCAGC 8 cut(s) 106, 219, 307, 556, 559, 622, 676, 679
BstV2I GAAGAC 1 cut(s) 410
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BsuRI GGCC 6 cut(s) 124, 444, 462, 635, 733, 747
BtgI CCRYGG 1 cut(s) 576
BtgZI GCGATG 1 cut(s) 36
BtrI CACGTC 1 cut(s) 500
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 2 cut(s) 24, 62
BveI ACCTGC 1 cut(s) 499
Cac8I GCNNGC 2 cut(s) 565, 864
CciI TCATGA 1 cut(s) 516
CfoI GCGC 2 cut(s) 439, 862
Cfr10I RCCGGY 1 cut(s) 462
Cfr13I GGNCC 5 cut(s) 122, 223, 443, 732, 746
Cfr9I CCCGGG 1 cut(s) 34
Csp6I GTAC 4 cut(s) 13, 31, 171, 555
CviAII CATG 3 cut(s) 154, 517, 577
CviQI GTAC 4 cut(s) 13, 31, 171, 555
DdeI CTNAG 4 cut(s) 414, 536, 717, 810
DpnI GATC 4 cut(s) 69, 327, 489, 741
DpnII GATC 4 cut(s) 67, 325, 487, 739
EaeI YGGCCR 1 cut(s) 633
Eam1104I CTCTTC 1 cut(s) 906
EarI CTCTTC 1 cut(s) 906
Ecl136II GAGCTC 2 cut(s) 700, 922
Eco130I CCWWGG 1 cut(s) 576
Eco24I GRGCYC 2 cut(s) 702, 924
Eco47I GGWCC 1 cut(s) 223
Eco47III AGCGCT 2 cut(s) 438, 861
Eco53kI GAGCTC 2 cut(s) 700, 922
Eco88I CYCGRG 2 cut(s) 34, 166
EcoICRI GAGCTC 2 cut(s) 700, 922
EcoO109I RGGNCCY 3 cut(s) 223, 443, 746
EcoRII CCWGG 2 cut(s) 635, 924
EcoT14I CCWWGG 1 cut(s) 576
EcoT38I GRGCYC 2 cut(s) 702, 924
ErhI CCWWGG 1 cut(s) 576
FaeI CATG 3 cut(s) 157, 520, 580
FaiI YATR 8 cut(s) 150, 155, 518, 578, 681, 840, 888, 973
FaqI GGGAC 2 cut(s) 236, 610
FatI CATG 3 cut(s) 153, 516, 576
FauI CCCGC 2 cut(s) 32, 56
FbaI TGATCA 1 cut(s) 739
Fnu4HI GCNGC 8 cut(s) 95, 208, 296, 545, 548, 611, 665, 668
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 2 cut(s) 702, 924
Fsp4HI GCNGC 8 cut(s) 95, 208, 296, 545, 548, 611, 665, 668
FspBI CTAG 7 cut(s) 255, 440, 473, 558, 671, 750, 854
GlaI GCGC 2 cut(s) 438, 861
GluI GCNGC 8 cut(s) 95, 208, 296, 545, 548, 611, 665, 668
GsuI CTGGAG 2 cut(s) 265, 629
HaeII RGCGCY 2 cut(s) 440, 863
HaeIII GGCC 6 cut(s) 124, 444, 462, 635, 733, 747
HapII CCGG 6 cut(s) 35, 120, 329, 463, 653, 905
HhaI GCGC 2 cut(s) 439, 862
Hin1II CATG 3 cut(s) 157, 520, 580
Hin6I GCGC 2 cut(s) 437, 860
HinP1I GCGC 2 cut(s) 437, 860
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 2 cut(s) 914, 965
HpaII CCGG 6 cut(s) 35, 120, 329, 463, 653, 905
HphI GGTGA 3 cut(s) 541, 779, 845
Hpy188I TCNGA 6 cut(s) 75, 138, 180, 372, 850, 919
Hpy188III TCNNGA 4 cut(s) 329, 517, 646, 818
Hpy99I CGWCG 1 cut(s) 501
HpyAV CCTTC 8 cut(s) 16, 347, 393, 420, 578, 688, 723, 947
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4IV ACGT 1 cut(s) 499
HpyCH4V TGCA 3 cut(s) 664, 866, 877
HpyF10VI GCNNNNNNNGC 5 cut(s) 434, 541, 632, 753, 859
HpyF3I CTNAG 4 cut(s) 414, 536, 717, 810
HpySE526I ACGT 1 cut(s) 499
Hsp92II CATG 3 cut(s) 157, 520, 580
HspAI GCGC 2 cut(s) 437, 860
KflI GGGWCCC 1 cut(s) 223
Kpn2I TCCGGA 1 cut(s) 328
Ksp22I TGATCA 1 cut(s) 739
Kzo9I GATC 4 cut(s) 67, 325, 487, 739
LmnI GCTCC 6 cut(s) 60, 91, 192, 697, 850, 927
Lsp1109I GCAGC 8 cut(s) 106, 219, 307, 556, 559, 622, 676, 679
LweI GCATC 1 cut(s) 385
MaeI CTAG 7 cut(s) 255, 440, 473, 558, 671, 750, 854
MaeII ACGT 1 cut(s) 499
MaeIII GTNAC 2 cut(s) 500, 712
MalI GATC 4 cut(s) 69, 327, 489, 741
MbiI CCGCTC 1 cut(s) 63
MboI GATC 4 cut(s) 67, 325, 487, 739
MboII GAAGA 3 cut(s) 415, 716, 923
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 3 cut(s) 643, 702, 924
MlsI TGGCCA 1 cut(s) 635
MluCI AATT 5 cut(s) 4, 274, 792, 821, 930
MluNI TGGCCA 1 cut(s) 635
MlyI GAGTC 2 cut(s) 923, 974
MmeI TCCRAC 2 cut(s) 700, 828
Mox20I TGGCCA 1 cut(s) 635
MroI TCCGGA 1 cut(s) 328
MscI TGGCCA 1 cut(s) 635
MseI TTAA 4 cut(s) 300, 362, 795, 804
MslI CAYNNNNRTG 1 cut(s) 55
Msp20I TGGCCA 1 cut(s) 635
MspI CCGG 6 cut(s) 35, 120, 329, 463, 653, 905
MspR9I CCNGG 6 cut(s) 35, 36, 121, 637, 653, 926
MvaI CCWGG 2 cut(s) 637, 926
MwoI GCNNNNNNNGC 5 cut(s) 434, 541, 632, 753, 859
NciI CCSGG 4 cut(s) 35, 36, 121, 653
NcoI CCATGG 1 cut(s) 576
NdeII GATC 4 cut(s) 67, 325, 487, 739
NlaIII CATG 3 cut(s) 157, 520, 580
NlaIV GGNNCC 5 cut(s) 69, 87, 224, 225, 903
NmuCI GTSAC 2 cut(s) 500, 712
PagI TCATGA 1 cut(s) 516
PcsI WCGNNNNNNNCGW 2 cut(s) 496, 708
PfoI TCCNGGA 1 cut(s) 924
PkrI GCNGC 8 cut(s) 96, 209, 297, 546, 549, 612, 666, 669
PleI GAGTC 2 cut(s) 922, 973
PpsI GAGTC 2 cut(s) 922, 973
PpuMI RGGWCCY 1 cut(s) 223
Psp124BI GAGCTC 2 cut(s) 702, 924
Psp5II RGGWCCY 1 cut(s) 223
Psp6I CCWGG 2 cut(s) 635, 924
PspGI CCWGG 2 cut(s) 635, 924
PspN4I GGNNCC 5 cut(s) 69, 87, 224, 225, 903
PspPI GGNCC 5 cut(s) 122, 223, 443, 732, 746
PspPPI RGGWCCY 1 cut(s) 223
PstI CTGCAG 1 cut(s) 666
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 4 cut(s) 14, 32, 172, 556
RsaNI GTAC 4 cut(s) 13, 31, 171, 555
RseI CAYNNNNRTG 1 cut(s) 55
SacI GAGCTC 2 cut(s) 702, 924
SaqAI TTAA 4 cut(s) 300, 362, 795, 804
SatI GCNGC 8 cut(s) 95, 208, 296, 545, 548, 611, 665, 668
Sau3AI GATC 4 cut(s) 67, 325, 487, 739
Sau96I GGNCC 5 cut(s) 122, 223, 443, 732, 746
ScaI AGTACT 2 cut(s) 172, 556
SchI GAGTC 2 cut(s) 923, 974
ScrFI CCNGG 6 cut(s) 35, 36, 121, 637, 653, 926
SduI GDGCHC 3 cut(s) 643, 702, 924
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 1 cut(s) 662
SinI GGWCC 1 cut(s) 223
SmaI CCCGGG 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 55
Sse9I AATT 5 cut(s) 4, 274, 792, 821, 930
SsiI CCGC 3 cut(s) 39, 63, 92
SspMI CTAG 7 cut(s) 255, 440, 473, 558, 671, 750, 854
SstI GAGCTC 2 cut(s) 702, 924
StyD4I CCNGG 6 cut(s) 33, 34, 119, 635, 651, 924
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 1 cut(s) 82
TaiI ACGT 1 cut(s) 502
TaqI TCGA 2 cut(s) 44, 702
TasI AATT 5 cut(s) 4, 274, 792, 821, 930
TatI WGTACW 2 cut(s) 170, 554
Tru1I TTAA 4 cut(s) 300, 362, 795, 804
Tru9I TTAA 4 cut(s) 300, 362, 795, 804
TscAI CASTG 2 cut(s) 24, 62
TseFI GTSAC 2 cut(s) 500, 712
TseI GCWGC 8 cut(s) 94, 207, 295, 544, 547, 610, 664, 667
Tsp45I GTSAC 2 cut(s) 500, 712
TspDTI ATGAA 8 cut(s) 17, 39, 257, 366, 620, 855, 875, 966
TspGWI ACGGA 1 cut(s) 706
TspMI CCCGGG 1 cut(s) 34
TspRI CASTG 2 cut(s) 24, 62
VpaK11BI GGWCC 1 cut(s) 223
XapI RAATTY 1 cut(s) 821
XmaI CCCGGG 1 cut(s) 34
XspI CTAG 7 cut(s) 255, 440, 473, 558, 671, 750, 854
ZrmI AGTACT 2 cut(s) 172, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.