Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005620

Physical Location & Seq

Genomic Coordinates Reverse (-)

53144844 .. 53146531

Gene Structure 1688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26020

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAATTACTTGTACCCAGTGAAGGAAGAGTACCCGGGCGGGTCGAGTTCATCGCAGCGGAGCGGGGATCCTCTGATGACGGTGGCTCCACCGCAGCCGATGGAGGGGCTGAATGACACCGGGCCTCCTCCATTTCTGAACAAGACTTATGACATGGTGGATGACCCGAGTACTAATCGGATAGTCTCGTGGAGCAGAGGAGGGGGCAGCTTTGTGGTTTGGGACCCTCATTCGTTTGTGATGAACCTCCTGCCTAGATACTTCAAGCACAATAATTTCTCCAGCTTTGTCAGGCAGCTTAACACTTACGGCTTTAGAAAGGTTGATCCGGATAGGTGGGAGTTTGCCAATGAAGGATTTTTAAGGGGTCAGAAGCATCTCCTAAAGAACATTAGGAGAAGGAAGACACCTTCTCAGCCTATTCCAGCACACCAAGCGCTAGGCCCTTGTGTGGAAGTAGGCCGGTTTGGGCTAGACGGAGAAGTTGATCGTTTGCGACGTGACAAGCAGGTTCTCATGATGGAGTTGGTGAAGCTTAGACAGCAGCAGCAGGGTACTAGAGCTTGCCTTCAAGCCATGGAACAAAGGCTAAAAGCGACAGAAATGAAGCAGCAACAAATGATGGCTTTCCTGGCCAGGGCACTGCAGAACCCGGCTTTCCTGCAGCAGCTAGTCCAACATAAGGAGAAACGGAAGGAGCTTGAAGAAGCTGTGACTAAGAAAAGGAGAAGGCCGATTGATCAAGGCCCTAGTGGCTTTGGTGGTGGTGAAACTAACCAAAGGGGCAAAGGAATTAACCCTGTTAAAGCTGAGCCTCTTGAATTTGGAGATGGCGAGTATGAAATGTCGGAGCTAGAAGCGCTTGCAATGGAAATGCAAGGATTTCATAAGGCAAGAAAGGAGCCGGAGGAAGAGATTTTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0042802 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

308

Amino Acids

35.19

Weight (kDa)

9.21

Isoelectric Point (pI)

58.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	45 - 134	1.6e-30	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51910
fragaria_vesca	FvH4_2g23000 FvH4_2g23000
malus_domestica	MD03G1258300.v1.1 MD11G1278900.v1.1
prunus_persica	Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1
pyrus_communis	pycom03g20460 pycom11g24650
rosa_chinensis	RchiOBHm_Chr6g0290041
rosa_laevigata	RLG00000012252
rosa_multiflora	Rmu_co8347871.1_g000001 Rmu_sc0002902.1_g000045 Rmu_sc0003927.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177400
rosa_rugosa	Rorug06G0208300 Rorug06G0208400
rosa_samantha	Rh6AG319900 Rh6BG327000 Rh6CG332800 Rh6DG318700
rosa_wichuraiana	Rw6G027600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	499
AccBSI	CCGCTC	1 cut(s)	63
AccIII	TCCGGA	1 cut(s)	328
AciI	CCGC	4 cut(s)	39, 58, 63, 92
AclWI	GGATC	3 cut(s)	62, 75, 320
AcoI	YGGCCR	1 cut(s)	633
AcsI	RAATTY	1 cut(s)	821
AfaI	GTAC	4 cut(s)	14, 32, 172, 556
AfeI	AGCGCT	2 cut(s)	438, 861
AfiI	CCNNNNNNNGG	5 cut(s)	22, 104, 451, 637, 682
AgsI	TTSAA	4 cut(s)	265, 572, 704, 821
AjiI	CACGTC	1 cut(s)	500
AjnI	CCWGG	2 cut(s)	630, 635
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	3 cut(s)	62, 75, 320
Ama87I	CYCGRG	2 cut(s)	34, 166
Aor13HI	TCCGGA	1 cut(s)	328
Aor51HI	AGCGCT	2 cut(s)	438, 861
AoxI	GGCC	6 cut(s)	122, 442, 460, 633, 731, 745
ApeKI	GCWGC	9 cut(s)	55, 94, 207, 295, 544, 547, 610, 664, 667
ApoI	RAATTY	1 cut(s)	821
AspLEI	GCGC	2 cut(s)	439, 862
AspS9I	GGNCC	4 cut(s)	122, 223, 443, 746
AsuC2I	CCSGG	4 cut(s)	35, 36, 121, 653
AsuHPI	GGTGA	2 cut(s)	541, 779
AvaI	CYCGRG	2 cut(s)	34, 166
AvaII	GGWCC	1 cut(s)	223
BaeGI	GKGCMC	1 cut(s)	643
BalI	TGGCCA	1 cut(s)	635
BamHI	GGATCC	1 cut(s)	67
BarI	GAAGNNNNNNTAC	2 cut(s)	14, 46
BauI	CACGAG	1 cut(s)	187
BbsI	GAAGAC	1 cut(s)	410
BbvI	GCAGC	9 cut(s)	67, 106, 219, 307, 556, 559, 622, 676, 679
BccI	CCATC	4 cut(s)	94, 514, 616, 824
BceAI	ACGGC	1 cut(s)	325
BciT130I	CCWGG	2 cut(s)	632, 637
BclI	TGATCA	1 cut(s)	739
BcnI	CCSGG	4 cut(s)	35, 36, 121, 653
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	7 cut(s)	255, 440, 473, 558, 671, 750, 854
BfmI	CTRYAG	2 cut(s)	644, 662
BfoI	RGCGCY	2 cut(s)	440, 863
BfuAI	ACCTGC	1 cut(s)	499
BglI	GCCNNNNNGGC	1 cut(s)	753
BisI	GCNGC	9 cut(s)	56, 95, 208, 296, 545, 548, 611, 665, 668
BlpI	GCTNAGC	1 cut(s)	810
BlsI	GCNGC	9 cut(s)	57, 96, 209, 297, 546, 549, 612, 666, 669
BmcAI	AGTACT	1 cut(s)	172
Bme1390I	CCNGG	6 cut(s)	35, 36, 121, 632, 637, 653
Bme18I	GGWCC	1 cut(s)	223
BmeT110I	CYCGRG	2 cut(s)	34, 166
BmgBI	CACGTC	1 cut(s)	500
BmgT120I	GGNCC	4 cut(s)	122, 223, 443, 746
BmiI	GGNNCC	5 cut(s)	69, 87, 224, 225, 903
BmrFI	CCNGG	6 cut(s)	35, 36, 121, 632, 637, 653
BmrI	ACTGGG	1 cut(s)	11
BmsI	GCATC	1 cut(s)	385
BmuI	ACTGGG	1 cut(s)	11
BpiI	GAAGAC	1 cut(s)	410
BpmI	CTGGAG	1 cut(s)	265
Bpu1102I	GCTNAGC	1 cut(s)	810
BpuMI	CCSGG	4 cut(s)	35, 36, 121, 653
BsaJI	CCNNGG	3 cut(s)	34, 576, 636
BsaWI	WCCGGW	1 cut(s)	328
BsaXI	ACNNNNNCTCC	4 cut(s)	70, 100, 109, 139
Bsc4I	CCNNNNNNNGG	5 cut(s)	22, 104, 451, 637, 682
Bse118I	RCCGGY	1 cut(s)	462
Bse1I	ACTGG	1 cut(s)	17
Bse3DI	GCAATG	1 cut(s)	873
BseAI	TCCGGA	1 cut(s)	328
BseBI	CCWGG	2 cut(s)	632, 637
BseDI	CCNNGG	3 cut(s)	34, 576, 636
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	5 cut(s)	22, 104, 451, 637, 682
BseMI	GCAATG	1 cut(s)	873
BseMII	CTCAG	2 cut(s)	428, 801
BseNI	ACTGG	1 cut(s)	17
BseRI	GAGGAG	2 cut(s)	117, 213
BseSI	GKGCMC	1 cut(s)	643
BseXI	GCAGC	9 cut(s)	67, 106, 219, 307, 556, 559, 622, 676, 679
BshFI	GGCC	6 cut(s)	124, 444, 462, 635, 733, 747
BsiHKCI	CYCGRG	2 cut(s)	34, 166
BsiSI	CCGG	6 cut(s)	35, 120, 329, 463, 653, 905
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	5 cut(s)	22, 104, 451, 637, 682
BsmAI	GTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	6 cut(s)	124, 444, 462, 635, 733, 747
BsoBI	CYCGRG	2 cut(s)	34, 166
Bsp1286I	GDGCHC	1 cut(s)	643
Bsp13I	TCCGGA	1 cut(s)	328
Bsp143I	GATC	4 cut(s)	67, 325, 487, 739
Bsp1720I	GCTNAGC	1 cut(s)	810
Bsp19I	CCATGG	1 cut(s)	576
BspACI	CCGC	4 cut(s)	39, 58, 63, 92
BspANI	GGCC	6 cut(s)	124, 444, 462, 635, 733, 747
BspCNI	CTCAG	2 cut(s)	427, 802
BspEI	TCCGGA	1 cut(s)	328
BspHI	TCATGA	1 cut(s)	516
BspLI	GGNNCC	5 cut(s)	69, 87, 224, 225, 903
BspMAI	CTGCAG	2 cut(s)	648, 666
BspMI	ACCTGC	1 cut(s)	499
BspPI	GGATC	3 cut(s)	62, 75, 320
BsrBI	CCGCTC	1 cut(s)	63
BsrDI	GCAATG	1 cut(s)	873
BsrFI	RCCGGY	1 cut(s)	462
BsrI	ACTGG	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	462
BssECI	CCNNGG	3 cut(s)	34, 576, 636
BssMI	GATC	4 cut(s)	67, 325, 487, 739
BssSI	CACGAG	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	576
Bst2BI	CACGAG	1 cut(s)	187
Bst2UI	CCWGG	2 cut(s)	632, 637
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	2 cut(s)	21, 906
BstC8I	GCNNGC	2 cut(s)	565, 864
BstDEI	CTNAG	4 cut(s)	414, 536, 717, 810
BstDSI	CCRYGG	1 cut(s)	576
BstF5I	GGATG	1 cut(s)	166
BstH2I	RGCGCY	2 cut(s)	440, 863
BstHHI	GCGC	2 cut(s)	439, 862
BstKTI	GATC	4 cut(s)	70, 328, 490, 742
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	4 cut(s)	67, 325, 487, 739
BstMWI	GCNNNNNNNGC	5 cut(s)	434, 541, 632, 753, 859
BstNI	CCWGG	2 cut(s)	632, 637
BstSCI	CCNGG	6 cut(s)	33, 34, 119, 630, 635, 651
BstSFI	CTRYAG	2 cut(s)	644, 662
BstSLI	GKGCMC	1 cut(s)	643
BstV1I	GCAGC	9 cut(s)	67, 106, 219, 307, 556, 559, 622, 676, 679
BstV2I	GAAGAC	1 cut(s)	410
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	6 cut(s)	124, 444, 462, 635, 733, 747
BtgI	CCRYGG	1 cut(s)	576
BtgZI	GCGATG	1 cut(s)	36
BtrI	CACGTC	1 cut(s)	500
BtsCI	GGATG	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	641
BtsIMutI	CAGTG	2 cut(s)	24, 641
BveI	ACCTGC	1 cut(s)	499
Cac8I	GCNNGC	2 cut(s)	565, 864
CciI	TCATGA	1 cut(s)	516
CfoI	GCGC	2 cut(s)	439, 862
Cfr10I	RCCGGY	1 cut(s)	462
Cfr13I	GGNCC	4 cut(s)	122, 223, 443, 746
Cfr9I	CCCGGG	1 cut(s)	34
Csp6I	GTAC	4 cut(s)	13, 31, 171, 555
CviAII	CATG	3 cut(s)	154, 517, 577
CviQI	GTAC	4 cut(s)	13, 31, 171, 555
DdeI	CTNAG	4 cut(s)	414, 536, 717, 810
DpnI	GATC	4 cut(s)	69, 327, 489, 741
DpnII	GATC	4 cut(s)	67, 325, 487, 739
EaeI	YGGCCR	1 cut(s)	633
Eam1104I	CTCTTC	2 cut(s)	21, 906
EarI	CTCTTC	2 cut(s)	21, 906
Eco130I	CCWWGG	1 cut(s)	576
Eco47I	GGWCC	1 cut(s)	223
Eco47III	AGCGCT	2 cut(s)	438, 861
Eco88I	CYCGRG	2 cut(s)	34, 166
EcoO109I	RGGNCCY	3 cut(s)	223, 443, 746
EcoRII	CCWGG	2 cut(s)	630, 635
EcoT14I	CCWWGG	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	576
FaeI	CATG	3 cut(s)	157, 520, 580
FaiI	YATR	7 cut(s)	150, 155, 518, 578, 681, 840, 888
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	3 cut(s)	153, 516, 576
FauI	CCCGC	2 cut(s)	32, 56
FbaI	TGATCA	1 cut(s)	739
Fnu4HI	GCNGC	9 cut(s)	56, 95, 208, 296, 545, 548, 611, 665, 668
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	9 cut(s)	56, 95, 208, 296, 545, 548, 611, 665, 668
FspBI	CTAG	7 cut(s)	255, 440, 473, 558, 671, 750, 854
GlaI	GCGC	2 cut(s)	438, 861
GluI	GCNGC	9 cut(s)	56, 95, 208, 296, 545, 548, 611, 665, 668
GsuI	CTGGAG	1 cut(s)	265
HaeII	RGCGCY	2 cut(s)	440, 863
HaeIII	GGCC	6 cut(s)	124, 444, 462, 635, 733, 747
HapII	CCGG	6 cut(s)	35, 120, 329, 463, 653, 905
HhaI	GCGC	2 cut(s)	439, 862
Hin1II	CATG	3 cut(s)	157, 520, 580
Hin6I	GCGC	2 cut(s)	437, 860
HinP1I	GCGC	2 cut(s)	437, 860
HindIII	AAGCTT	1 cut(s)	533
HpaII	CCGG	6 cut(s)	35, 120, 329, 463, 653, 905
HphI	GGTGA	2 cut(s)	541, 779
Hpy188I	TCNGA	5 cut(s)	75, 138, 180, 372, 850
Hpy188III	TCNNGA	3 cut(s)	329, 517, 818
Hpy99I	CGWCG	1 cut(s)	501
HpyAV	CCTTC	7 cut(s)	16, 347, 393, 420, 578, 688, 723
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	4 cut(s)	646, 664, 866, 877
HpyF10VI	GCNNNNNNNGC	5 cut(s)	434, 541, 632, 753, 859
HpyF3I	CTNAG	4 cut(s)	414, 536, 717, 810
HpySE526I	ACGT	1 cut(s)	499
Hsp92II	CATG	3 cut(s)	157, 520, 580
HspAI	GCGC	2 cut(s)	437, 860
KflI	GGGWCCC	1 cut(s)	223
Kpn2I	TCCGGA	1 cut(s)	328
Ksp22I	TGATCA	1 cut(s)	739
Kzo9I	GATC	4 cut(s)	67, 325, 487, 739
LmnI	GCTCC	6 cut(s)	60, 91, 192, 697, 850, 901
Lsp1109I	GCAGC	9 cut(s)	67, 106, 219, 307, 556, 559, 622, 676, 679
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	7 cut(s)	255, 440, 473, 558, 671, 750, 854
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	2 cut(s)	500, 712
MalI	GATC	4 cut(s)	69, 327, 489, 741
MbiI	CCGCTC	1 cut(s)	63
MboI	GATC	4 cut(s)	67, 325, 487, 739
MboII	GAAGA	4 cut(s)	38, 415, 716, 923
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	643
MlsI	TGGCCA	1 cut(s)	635
MluCI	AATT	4 cut(s)	4, 274, 792, 821
MluNI	TGGCCA	1 cut(s)	635
MmeI	TCCRAC	2 cut(s)	700, 828
Mox20I	TGGCCA	1 cut(s)	635
MroI	TCCGGA	1 cut(s)	328
MscI	TGGCCA	1 cut(s)	635
MseI	TTAA	4 cut(s)	300, 362, 795, 804
Msp20I	TGGCCA	1 cut(s)	635
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	6 cut(s)	35, 120, 329, 463, 653, 905
MspR9I	CCNGG	6 cut(s)	35, 36, 121, 632, 637, 653
MvaI	CCWGG	2 cut(s)	632, 637
MwoI	GCNNNNNNNGC	5 cut(s)	434, 541, 632, 753, 859
NciI	CCSGG	4 cut(s)	35, 36, 121, 653
NcoI	CCATGG	1 cut(s)	576
NdeII	GATC	4 cut(s)	67, 325, 487, 739
NlaIII	CATG	3 cut(s)	157, 520, 580
NlaIV	GGNNCC	5 cut(s)	69, 87, 224, 225, 903
NmuCI	GTSAC	2 cut(s)	500, 712
PagI	TCATGA	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	1 cut(s)	496
PkrI	GCNGC	9 cut(s)	57, 96, 209, 297, 546, 549, 612, 666, 669
PpuMI	RGGWCCY	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	223
Psp6I	CCWGG	2 cut(s)	630, 635
PspGI	CCWGG	2 cut(s)	630, 635
PspN4I	GGNNCC	5 cut(s)	69, 87, 224, 225, 903
PspPI	GGNCC	4 cut(s)	122, 223, 443, 746
PspPPI	RGGWCCY	1 cut(s)	223
PstI	CTGCAG	2 cut(s)	648, 666
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	4 cut(s)	14, 32, 172, 556
RsaNI	GTAC	4 cut(s)	13, 31, 171, 555
SaqAI	TTAA	4 cut(s)	300, 362, 795, 804
SatI	GCNGC	9 cut(s)	56, 95, 208, 296, 545, 548, 611, 665, 668
Sau3AI	GATC	4 cut(s)	67, 325, 487, 739
Sau96I	GGNCC	4 cut(s)	122, 223, 443, 746
ScaI	AGTACT	1 cut(s)	172
ScrFI	CCNGG	6 cut(s)	35, 36, 121, 632, 637, 653
SduI	GDGCHC	1 cut(s)	643
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	2 cut(s)	644, 662
SinI	GGWCC	1 cut(s)	223
SmaI	CCCGGG	1 cut(s)	36
Sse9I	AATT	4 cut(s)	4, 274, 792, 821
SsiI	CCGC	4 cut(s)	39, 58, 63, 92
SspMI	CTAG	7 cut(s)	255, 440, 473, 558, 671, 750, 854
StyD4I	CCNGG	6 cut(s)	33, 34, 119, 630, 635, 651
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	1 cut(s)	44
TasI	AATT	4 cut(s)	4, 274, 792, 821
TatI	WGTACW	1 cut(s)	170
Tru1I	TTAA	4 cut(s)	300, 362, 795, 804
Tru9I	TTAA	4 cut(s)	300, 362, 795, 804
TscAI	CASTG	2 cut(s)	24, 648
TseFI	GTSAC	2 cut(s)	500, 712
TseI	GCWGC	9 cut(s)	55, 94, 207, 295, 544, 547, 610, 664, 667
Tsp45I	GTSAC	2 cut(s)	500, 712
TspDTI	ATGAA	7 cut(s)	17, 39, 257, 366, 620, 855, 875
TspGWI	ACGGA	2 cut(s)	492, 706
TspMI	CCCGGG	1 cut(s)	34
TspRI	CASTG	2 cut(s)	24, 648
VpaK11BI	GGWCC	1 cut(s)	223
XapI	RAATTY	1 cut(s)	821
XmaI	CCCGGG	1 cut(s)	34
XspI	CTAG	7 cut(s)	255, 440, 473, 558, 671, 750, 854
ZrmI	AGTACT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.