FvH4_2g23000

Heat Stress Transcription Factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
18873061 .. 18875922
2862 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23000.t1

Sequence Viewer

Length: 1089 bp
ATGAATTACTTGTATCCAGTGAAGGAAGAGTACCCGGGAGACTCGAGTACATCGCAGTACTGGAGCGGGGATCCTCTGGTGGTGGCTCCACCGCAGCCCATGGAGGGCCTGAACGACACAGGCCCTCCTCCGTTTCTGAACAAGACTTATGACATGGTGGATGACCCGAGTACTAATCGGATAGTCTCGTGGAGCAGAGCAGGTGGCAGCTTTGTGGTTTGGGACCCTCATTCGTTGGTGATGAACCTCCTCCCTAGATACTTCAAGCACAACAATTTCTCCAGCTTCGTCAGGCAGCTCAACACTTACGGATTTAGAAAGGTTGATCCGGATAGGTGGGAGTTTGCGAATGAAGGATTTTTGAGGGGTCAGAAGCATCTCCTAAAGAACATTAGGCGAAGGAAGACACCTTCTCATCAGCCTATTCCACCGCACCAAGCTGTAGGCCCTTGTGTCGAAGTAGGCCGGTTTGGCCTAGATGGAGAGATTGATCGTTTGCGGCGCGACAAGCAGGTTCTGATGATGGAGTTAGTGAAGCTTAGACAGCAGCAGCAGAGTACTAGAGCGTGCCTTCAAGCCATGGAACAAAGGCTACAAGGGACAGAAAGGAAACAACAACAAATGATGGCTTTCTTGGCCAGGGCAATGCAGAACCCGGCTTTCCTGCAGCAGCTAGTCCAACACAAGGAGAAACGGAAGGAGCTTGAAGGAGCGGTGACTAAGAAAAGGAGGAGGCCGATTGATCAAGGCCCTAGTGGCTTTGGTGGTGGTGAAACTAACCTAAGGGGCAACGGAATTAGCCCTGTTAAAGCTGAGTCTCTTGAATTTGGAGACGGCTATTATGAAATGTCGGAGCTAGAAGCGCTTGCAATGGAAATGCAAGGATTTGGTAAGGCAAGAAAGGAACTGGAGGAAGAGTCAGAGCCCCTGGAAATTGGGGATAAAGAGCTTGATGAAGGATTCTGGGATGAACTATTTAGCGAGAGGTTTGAGGGGGGCTTGAGCACACCAAGTGCTGAAATTGGTGATGACGAAGATGTCATTATCTTGGCTGATCGCTTAGGTTACTTAGGTTCAACCCCAAGTTAG

Protein Analysis

363

Amino Acids

41.17

Weight (kDa)

5.49

Isoelectric Point (pI)

53.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 45 - 134 6.8e-30 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 191
AasI GACNNNNNNGTC 1 cut(s) 1037
Acc36I ACCTGC 2 cut(s) 191, 502
AccBSI CCGCTC 2 cut(s) 66, 713
AccII CGCG 1 cut(s) 504
AccIII TCCGGA 1 cut(s) 328
AciI CCGC 5 cut(s) 66, 92, 431, 499, 713
AclWI GGATC 3 cut(s) 65, 78, 320
AcoI YGGCCR 1 cut(s) 636
AcsI RAATTY 1 cut(s) 824
AdeI CACNNNGTG 1 cut(s) 1013
AfaI GTAC 5 cut(s) 32, 49, 59, 172, 559
AfeI AGCGCT 1 cut(s) 864
AfiI CCNNNNNNNGG 2 cut(s) 104, 685
AgsI TTSAA 5 cut(s) 265, 575, 707, 824, 1077
AjnI CCWGG 2 cut(s) 638, 927
Alw21I GWGCWC 1 cut(s) 1007
Alw26I GTCTC 4 cut(s) 33, 190, 822, 825
AlwI GGATC 3 cut(s) 65, 78, 320
AlwNI CAGNNNCTG 1 cut(s) 517
Ama87I CYCGRG 3 cut(s) 34, 43, 166
Aor13HI TCCGGA 1 cut(s) 328
Aor51HI AGCGCT 1 cut(s) 864
AoxI GGCC 8 cut(s) 106, 121, 445, 463, 472, 636, 734, 748
ApeKI GCWGC 7 cut(s) 94, 207, 295, 547, 550, 667, 670
ApoI RAATTY 1 cut(s) 824
AspLEI GCGC 2 cut(s) 504, 865
AspS9I GGNCC 5 cut(s) 106, 122, 223, 446, 749
AsuC2I CCSGG 3 cut(s) 35, 36, 656
AsuHPI GGTGA 4 cut(s) 250, 727, 782, 1037
AvaI CYCGRG 3 cut(s) 34, 43, 166
AvaII GGWCC 1 cut(s) 223
AxyI CCTNAGG 1 cut(s) 782
BalI TGGCCA 1 cut(s) 638
BamHI GGATCC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 927
BarI GAAGNNNNNNTAC 2 cut(s) 14, 46
BauI CACGAG 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 410
Bbv12I GWGCWC 1 cut(s) 1007
BbvI GCAGC 7 cut(s) 106, 219, 307, 559, 562, 679, 682
BccI CCATC 3 cut(s) 473, 517, 619
BceAI ACGGC 1 cut(s) 850
BciT130I CCWGG 2 cut(s) 640, 929
BciVI GTATCC 1 cut(s) 24
BclI TGATCA 1 cut(s) 742
BcnI CCSGG 3 cut(s) 35, 36, 656
BcoDI GTCTC 4 cut(s) 33, 190, 822, 825
BfaI CTAG 6 cut(s) 255, 476, 561, 674, 753, 857
BfmI CTRYAG 2 cut(s) 441, 665
BfoI RGCGCY 1 cut(s) 866
BfuAI ACCTGC 2 cut(s) 191, 502
BfuI GTATCC 1 cut(s) 24
BglI GCCNNNNNGGC 2 cut(s) 471, 756
BisI GCNGC 8 cut(s) 95, 208, 296, 500, 548, 551, 668, 671
BlsI GCNGC 8 cut(s) 96, 209, 297, 501, 549, 552, 669, 672
BmcAI AGTACT 3 cut(s) 59, 172, 559
Bme1390I CCNGG 5 cut(s) 35, 36, 640, 656, 929
Bme18I GGWCC 1 cut(s) 223
BmeT110I CYCGRG 3 cut(s) 34, 43, 166
BmgT120I GGNCC 5 cut(s) 106, 122, 223, 446, 749
BmiI GGNNCC 4 cut(s) 72, 87, 224, 225
BmrFI CCNGG 5 cut(s) 35, 36, 640, 656, 929
BmsI GCATC 1 cut(s) 385
BpiI GAAGAC 1 cut(s) 410
BpmI CTGGAG 3 cut(s) 82, 265, 929
Bpu10I CCTNAGC 1 cut(s) 1060
BpuEI CTTGAG 1 cut(s) 1021
BpuMI CCSGG 3 cut(s) 35, 36, 656
BsaJI CCNNGG 5 cut(s) 34, 99, 579, 639, 927
BsaWI WCCGGW 1 cut(s) 328
BsaXI ACNNNNNCTCC 6 cut(s) 109, 139, 263, 293, 902, 932
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 685
Bse118I RCCGGY 1 cut(s) 465
Bse1I ACTGG 3 cut(s) 17, 65, 912
Bse21I CCTNAGG 1 cut(s) 782
Bse3DI GCAATG 2 cut(s) 651, 876
BseAI TCCGGA 1 cut(s) 328
BseBI CCWGG 2 cut(s) 640, 929
BseDI CCNNGG 5 cut(s) 34, 99, 579, 639, 927
BseGI GGATG 2 cut(s) 166, 973
BseLI CCNNNNNNNGG 2 cut(s) 104, 685
BseMI GCAATG 2 cut(s) 651, 876
BseMII CTCAG 1 cut(s) 804
BseNI ACTGG 3 cut(s) 17, 65, 912
BseRI GAGGAG 3 cut(s) 117, 239, 745
BseXI GCAGC 7 cut(s) 106, 219, 307, 559, 562, 679, 682
Bsh1236I CGCG 1 cut(s) 504
BshFI GGCC 8 cut(s) 108, 123, 447, 465, 474, 638, 736, 750
BsiHKAI GWGCWC 1 cut(s) 1007
BsiHKCI CYCGRG 3 cut(s) 34, 43, 166
BsiSI CCGG 4 cut(s) 35, 329, 466, 656
BslFI GGGAC 2 cut(s) 236, 613
BslI CCNNNNNNNGG 2 cut(s) 104, 685
BsmAI GTCTC 4 cut(s) 33, 190, 822, 825
BsmBI CGTCTC 1 cut(s) 825
BsmFI GGGAC 2 cut(s) 236, 613
BsnI GGCC 8 cut(s) 108, 123, 447, 465, 474, 638, 736, 750
BsoBI CYCGRG 3 cut(s) 34, 43, 166
Bsp1286I GDGCHC 2 cut(s) 927, 1007
Bsp13I TCCGGA 1 cut(s) 328
Bsp143I GATC 5 cut(s) 70, 325, 490, 742, 1054
Bsp19I CCATGG 2 cut(s) 99, 579
BspACI CCGC 5 cut(s) 66, 92, 431, 499, 713
BspANI GGCC 8 cut(s) 108, 123, 447, 465, 474, 638, 736, 750
BspCNI CTCAG 1 cut(s) 805
BspEI TCCGGA 1 cut(s) 328
BspFNI CGCG 1 cut(s) 504
BspLI GGNNCC 4 cut(s) 72, 87, 224, 225
BspMAI CTGCAG 1 cut(s) 669
BspMI ACCTGC 2 cut(s) 191, 502
BspPI GGATC 3 cut(s) 65, 78, 320
BsrBI CCGCTC 2 cut(s) 66, 713
BsrDI GCAATG 2 cut(s) 651, 876
BsrFI RCCGGY 1 cut(s) 465
BsrI ACTGG 3 cut(s) 17, 65, 912
BssAI RCCGGY 1 cut(s) 465
BssECI CCNNGG 5 cut(s) 34, 99, 579, 639, 927
BssMI GATC 5 cut(s) 70, 325, 490, 742, 1054
BssSI CACGAG 1 cut(s) 187
BssT1I CCWWGG 2 cut(s) 99, 579
Bst2BI CACGAG 1 cut(s) 187
Bst2UI CCWGG 2 cut(s) 640, 929
Bst6I CTCTTC 2 cut(s) 21, 909
BstC8I GCNNGC 2 cut(s) 568, 867
BstDEI CTNAG 6 cut(s) 539, 720, 782, 813, 1060, 1069
BstDSI CCRYGG 2 cut(s) 99, 579
BstF5I GGATG 2 cut(s) 166, 973
BstFNI CGCG 1 cut(s) 504
BstH2I RGCGCY 1 cut(s) 866
BstHHI GCGC 2 cut(s) 504, 865
BstKTI GATC 5 cut(s) 73, 328, 493, 745, 1057
BstMAI GTCTC 4 cut(s) 33, 190, 822, 825
BstMBI GATC 5 cut(s) 70, 325, 490, 742, 1054
BstMWI GCNNNNNNNGC 6 cut(s) 471, 508, 544, 635, 756, 862
BstNI CCWGG 2 cut(s) 640, 929
BstSCI CCNGG 5 cut(s) 33, 34, 638, 654, 927
BstSFI CTRYAG 2 cut(s) 441, 665
BstUI CGCG 1 cut(s) 504
BstV1I GCAGC 7 cut(s) 106, 219, 307, 559, 562, 679, 682
BstV2I GAAGAC 1 cut(s) 410
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 782
BsuI GTATCC 1 cut(s) 24
BsuRI GGCC 8 cut(s) 108, 123, 447, 465, 474, 638, 736, 750
BtgI CCRYGG 2 cut(s) 99, 579
BtgZI GCGATG 1 cut(s) 36
BtsCI GGATG 2 cut(s) 166, 973
BtsIMutI CAGTG 1 cut(s) 24
BveI ACCTGC 2 cut(s) 191, 502
Cac8I GCNNGC 2 cut(s) 568, 867
CaiI CAGNNNCTG 1 cut(s) 517
CfoI GCGC 2 cut(s) 504, 865
Cfr10I RCCGGY 1 cut(s) 465
Cfr13I GGNCC 5 cut(s) 106, 122, 223, 446, 749
Cfr9I CCCGGG 1 cut(s) 34
Csp6I GTAC 5 cut(s) 31, 48, 58, 171, 558
CviAII CATG 3 cut(s) 100, 154, 580
CviQI GTAC 5 cut(s) 31, 48, 58, 171, 558
DdeI CTNAG 6 cut(s) 539, 720, 782, 813, 1060, 1069
DpnI GATC 5 cut(s) 72, 327, 492, 744, 1056
DpnII GATC 5 cut(s) 70, 325, 490, 742, 1054
DraIII CACNNNGTG 1 cut(s) 1013
DrdI GACNNNNNNGTC 1 cut(s) 1037
DseDI GACNNNNNNGTC 1 cut(s) 1037
EaeI YGGCCR 1 cut(s) 636
Eam1104I CTCTTC 2 cut(s) 21, 909
EarI CTCTTC 2 cut(s) 21, 909
Eco130I CCWWGG 2 cut(s) 99, 579
Eco24I GRGCYC 1 cut(s) 927
Eco47I GGWCC 1 cut(s) 223
Eco47III AGCGCT 1 cut(s) 864
Eco81I CCTNAGG 1 cut(s) 782
Eco88I CYCGRG 3 cut(s) 34, 43, 166
EcoO109I RGGNCCY 5 cut(s) 106, 122, 223, 446, 749
EcoRII CCWGG 2 cut(s) 638, 927
EcoT14I CCWWGG 2 cut(s) 99, 579
EcoT38I GRGCYC 1 cut(s) 927
ErhI CCWWGG 2 cut(s) 99, 579
Esp3I CGTCTC 1 cut(s) 825
FaeI CATG 3 cut(s) 103, 157, 583
FaiI YATR 5 cut(s) 101, 150, 155, 581, 843
FaqI GGGAC 2 cut(s) 236, 613
FatI CATG 3 cut(s) 99, 153, 579
FauI CCCGC 1 cut(s) 59
FbaI TGATCA 1 cut(s) 742
Fnu4HI GCNGC 8 cut(s) 95, 208, 296, 500, 548, 551, 668, 671
FokI GGATG 2 cut(s) 173, 980
FriOI GRGCYC 1 cut(s) 927
Fsp4HI GCNGC 8 cut(s) 95, 208, 296, 500, 548, 551, 668, 671
FspBI CTAG 6 cut(s) 255, 476, 561, 674, 753, 857
GlaI GCGC 2 cut(s) 503, 864
GluI GCNGC 8 cut(s) 95, 208, 296, 500, 548, 551, 668, 671
GsuI CTGGAG 3 cut(s) 82, 265, 929
HaeII RGCGCY 1 cut(s) 866
HaeIII GGCC 8 cut(s) 108, 123, 447, 465, 474, 638, 736, 750
HapII CCGG 4 cut(s) 35, 329, 466, 656
HhaI GCGC 2 cut(s) 504, 865
Hin1II CATG 3 cut(s) 103, 157, 583
Hin6I GCGC 2 cut(s) 502, 863
HinP1I GCGC 2 cut(s) 502, 863
HindIII AAGCTT 1 cut(s) 536
HinfI GANTC 4 cut(s) 41, 815, 917, 960
HpaII CCGG 4 cut(s) 35, 329, 466, 656
HphI GGTGA 4 cut(s) 250, 727, 782, 1037
Hpy188I TCNGA 6 cut(s) 138, 180, 372, 519, 853, 922
Hpy188III TCNNGA 2 cut(s) 329, 821
HpyAV CCTTC 8 cut(s) 16, 347, 393, 420, 581, 691, 701, 950
HpyCH4V TGCA 4 cut(s) 649, 667, 869, 880
HpyF10VI GCNNNNNNNGC 6 cut(s) 471, 508, 544, 635, 756, 862
HpyF3I CTNAG 6 cut(s) 539, 720, 782, 813, 1060, 1069
Hsp92II CATG 3 cut(s) 103, 157, 583
HspAI GCGC 2 cut(s) 502, 863
KflI GGGWCCC 1 cut(s) 223
Kpn2I TCCGGA 1 cut(s) 328
Ksp22I TGATCA 1 cut(s) 742
Kzo9I GATC 5 cut(s) 70, 325, 490, 742, 1054
LmnI GCTCC 6 cut(s) 63, 91, 192, 700, 710, 853
Lsp1109I GCAGC 7 cut(s) 106, 219, 307, 559, 562, 679, 682
LweI GCATC 1 cut(s) 385
MaeI CTAG 6 cut(s) 255, 476, 561, 674, 753, 857
MaeIII GTNAC 2 cut(s) 715, 1064
MalI GATC 5 cut(s) 72, 327, 492, 744, 1056
MbiI CCGCTC 2 cut(s) 66, 713
MboI GATC 5 cut(s) 70, 325, 490, 742, 1054
MboII GAAGA 4 cut(s) 38, 415, 926, 1046
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 2 cut(s) 927, 1007
MlsI TGGCCA 1 cut(s) 638
MluCI AATT 6 cut(s) 4, 274, 795, 824, 933, 1020
MluNI TGGCCA 1 cut(s) 638
MlyI GAGTC 3 cut(s) 35, 824, 926
MmeI TCCRAC 2 cut(s) 703, 831
Mox20I TGGCCA 1 cut(s) 638
MroI TCCGGA 1 cut(s) 328
MscI TGGCCA 1 cut(s) 638
MseI TTAA 1 cut(s) 807
Msp20I TGGCCA 1 cut(s) 638
MspI CCGG 4 cut(s) 35, 329, 466, 656
MspR9I CCNGG 5 cut(s) 35, 36, 640, 656, 929
MvaI CCWGG 2 cut(s) 640, 929
MvnI CGCG 1 cut(s) 504
MwoI GCNNNNNNNGC 6 cut(s) 471, 508, 544, 635, 756, 862
NciI CCSGG 3 cut(s) 35, 36, 656
NcoI CCATGG 2 cut(s) 99, 579
NdeII GATC 5 cut(s) 70, 325, 490, 742, 1054
NlaIII CATG 3 cut(s) 103, 157, 583
NlaIV GGNNCC 4 cut(s) 72, 87, 224, 225
NmuCI GTSAC 1 cut(s) 715
PaeR7I CTCGAG 1 cut(s) 43
PaqCI CACCTGC 1 cut(s) 191
PfeI GAWTC 1 cut(s) 960
PkrI GCNGC 8 cut(s) 96, 209, 297, 501, 549, 552, 669, 672
PleI GAGTC 3 cut(s) 35, 823, 925
PpsI GAGTC 3 cut(s) 35, 823, 925
PpuMI RGGWCCY 1 cut(s) 223
Psp5II RGGWCCY 1 cut(s) 223
Psp6I CCWGG 2 cut(s) 638, 927
PspGI CCWGG 2 cut(s) 638, 927
PspN4I GGNNCC 4 cut(s) 72, 87, 224, 225
PspPI GGNCC 5 cut(s) 106, 122, 223, 446, 749
PspPPI RGGWCCY 1 cut(s) 223
PspXI VCTCGAGB 1 cut(s) 43
PsrI GAACNNNNNNTAC 2 cut(s) 576, 608
PstI CTGCAG 1 cut(s) 669
PstNI CAGNNNCTG 1 cut(s) 517
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 5 cut(s) 32, 49, 59, 172, 559
RsaNI GTAC 5 cut(s) 31, 48, 58, 171, 558
SaqAI TTAA 1 cut(s) 807
SatI GCNGC 8 cut(s) 95, 208, 296, 500, 548, 551, 668, 671
Sau3AI GATC 5 cut(s) 70, 325, 490, 742, 1054
Sau96I GGNCC 5 cut(s) 106, 122, 223, 446, 749
ScaI AGTACT 3 cut(s) 59, 172, 559
SchI GAGTC 3 cut(s) 35, 824, 926
ScrFI CCNGG 5 cut(s) 35, 36, 640, 656, 929
SduI GDGCHC 2 cut(s) 927, 1007
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 2 cut(s) 441, 665
SfiI GGCCNNNNNGGCC 1 cut(s) 471
Sfr274I CTCGAG 1 cut(s) 43
SinI GGWCC 1 cut(s) 223
SlaI CTCGAG 1 cut(s) 43
SmaI CCCGGG 1 cut(s) 36
SmlI CTYRAG 2 cut(s) 43, 1000
SmoI CTYRAG 2 cut(s) 43, 1000
Sse9I AATT 6 cut(s) 4, 274, 795, 824, 933, 1020
SsiI CCGC 5 cut(s) 66, 92, 431, 499, 713
SspMI CTAG 6 cut(s) 255, 476, 561, 674, 753, 857
StyD4I CCNGG 5 cut(s) 33, 34, 638, 654, 927
StyI CCWWGG 2 cut(s) 99, 579
TaqI TCGA 2 cut(s) 44, 456
TasI AATT 6 cut(s) 4, 274, 795, 824, 933, 1020
TatI WGTACW 4 cut(s) 47, 57, 170, 557
TauI GCSGC 1 cut(s) 502
TfiI GAWTC 1 cut(s) 960
Tru1I TTAA 1 cut(s) 807
Tru9I TTAA 1 cut(s) 807
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 7 cut(s) 94, 207, 295, 547, 550, 667, 670
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 6 cut(s) 17, 257, 366, 858, 969, 984
TspGWI ACGGA 4 cut(s) 120, 324, 709, 807
TspMI CCCGGG 1 cut(s) 34
TspRI CASTG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 223
XapI RAATTY 1 cut(s) 824
XhoI CTCGAG 1 cut(s) 43
XmaI CCCGGG 1 cut(s) 34
XspI CTAG 6 cut(s) 255, 476, 561, 674, 753, 857
ZrmI AGTACT 3 cut(s) 59, 172, 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.