Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005620

Physical Location & Seq

Genomic Coordinates Reverse (-)

20813042 .. 20817657

Gene Structure 4616 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G234900.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAACTATCTGTACCCAGTGAAGGAAGAGTTCCCGGGTTCAAGTGCATCACAATCGGGTCCTGGTGACCCGGTGGTGATGATACCGCCACAGCCAATGGAGGGTCTGAATGACACAGGCCCTCCTCCATTTCTGACCAAGACCTTTGACATGGTGGATGACCCGAGTACCAATCGGATAGTTTCTTGGAGCAGAGGAGGTGGAAGCTTTGTTGTTTGGGATCCTCATACCTTTGTTATGAATCTCCTTCCTAGATACTTCAAGCACAATAATTTCTCAAGCTTTGTCAGGCAGCTCAACACTTACGGCTTTAGAAAGGTTGATCCTGACAGATGGGAGTTTGCCAATGAGGGGTTTGTAAGGGGTCAGAAGCATCTCCTTAAGAACATTAAAAGAAGGAAGACACCTTCTCAGCCTCTTCCTGCACAACAAGCTCTAGGCCCTTGTGTGGAAGTAGGCCGGTTTGGGCTAGATGGAGAAATTGATCGTTTGCGGCGCGACAAGCAGGTCCTAATGATGGAGTTGGTGAAGCTTAGACAGCAGCAGCAGAATACTAGAGCCTACCTTCAAGCAATGGAACAAAGGCTGCAAGGGACTGAAAGGAAGCAGCAACAAATGATGGCTTTCTTGGCAAGGGCAATGCAAAACCCAGCTTTTATGCAGCAGCTAGTCCAACAGAAGGATAAAAGGAAGGAGCTTGAGGAAGCCATGACTAAGAAAAGGAGGAGGCCAATTGATCAAGGACCTAGTGGTGTTGGTGGTGGCAAATCGAGCCTAAAGGGCAAGGGAACAAACCTCATTAAATGTGAGCCTCTTGAATTTGGAGATTGTGATTATGAAATGTCAGAGCTAGAAGCACTTGCATTGGAAATGCAAGGATTTGGAAAGGCAAGAAAGGAACAGGATGAAGAGCTAGAGCCACTAGAGAGTGGGAAAGAGTTCGATGAGGGATTTTGGGAAGAACTATTTAGTGAGAGATTGGAGGAAGACTTCAGCATTCCAAGTGCAATAGTAGGGGAAGATGAAGATGTGATTATCTTGGCTGATCGCTTAGGTTACTTAGGTTCATGCCCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0042802 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

360

Amino Acids

40.94

Weight (kDa)

5.58

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51910
fragaria_vesca	FvH4_2g23000 FvH4_2g23000
malus_domestica	MD03G1258300.v1.1 MD11G1278900.v1.1
prunus_persica	Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1
pyrus_communis	pycom03g20460 pycom11g24650
rosa_chinensis	RchiOBHm_Chr6g0290041
rosa_laevigata	RLG00000012252
rosa_multiflora	Rmu_co8347871.1_g000001 Rmu_sc0002902.1_g000045 Rmu_sc0003927.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177400
rosa_rugosa	Rorug06G0208300 Rorug06G0208400
rosa_samantha	Rh6AG319900 Rh6BG327000 Rh6CG332800 Rh6DG318700
rosa_wichuraiana	Rw6G027600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	506
Acc36I	ACCTGC	1 cut(s)	496
AccII	CGCG	1 cut(s)	498
AciI	CCGC	2 cut(s)	86, 493
AclWI	GGATC	3 cut(s)	215, 228, 317
AcsI	RAATTY	1 cut(s)	818
AcuI	CTGAAG	1 cut(s)	976
AfaI	GTAC	2 cut(s)	14, 169
AfiI	CCNNNNNNNGG	6 cut(s)	22, 101, 351, 448, 517, 679
AflII	CTTAAG	1 cut(s)	380
AgsI	TTSAA	4 cut(s)	42, 262, 569, 818
AjnI	CCWGG	1 cut(s)	61
AlwI	GGATC	3 cut(s)	215, 228, 317
Ama87I	CYCGRG	2 cut(s)	34, 163
AoxI	GGCC	4 cut(s)	118, 439, 457, 728
ApeKI	GCWGC	7 cut(s)	292, 541, 544, 586, 607, 661, 664
ApoI	RAATTY	1 cut(s)	818
Asp700I	GAANNNNTTC	1 cut(s)	938
AspLEI	GCGC	1 cut(s)	498
AspS9I	GGNCC	5 cut(s)	59, 119, 440, 508, 743
AsuC2I	CCSGG	3 cut(s)	35, 36, 71
AsuHPI	GGTGA	3 cut(s)	77, 88, 538
AvaI	CYCGRG	2 cut(s)	34, 163
AvaII	GGWCC	3 cut(s)	59, 508, 743
BaeI	ACNNNNGTAYC	2 cut(s)	151, 184
BamHI	GGATCC	1 cut(s)	220
BbsI	GAAGAC	2 cut(s)	407, 993
BbvI	GCAGC	7 cut(s)	304, 553, 556, 573, 619, 673, 676
BccI	CCATC	4 cut(s)	327, 467, 511, 613
BceAI	ACGGC	1 cut(s)	322
BcgI	CGANNNNNNTGC	2 cut(s)	36, 70
BciT130I	CCWGG	1 cut(s)	63
BclI	TGATCA	1 cut(s)	736
BcnI	CCSGG	3 cut(s)	35, 36, 71
BfaI	CTAG	9 cut(s)	252, 437, 470, 555, 668, 747, 851, 914, 923
BfrI	CTTAAG	1 cut(s)	380
BfuAI	ACCTGC	1 cut(s)	496
BglI	GCCNNNNNGGC	1 cut(s)	780
BisI	GCNGC	8 cut(s)	293, 494, 542, 545, 587, 608, 662, 665
BlsI	GCNGC	8 cut(s)	294, 495, 543, 546, 588, 609, 663, 666
Bme1390I	CCNGG	4 cut(s)	35, 36, 63, 71
Bme18I	GGWCC	3 cut(s)	59, 508, 743
BmeT110I	CYCGRG	2 cut(s)	34, 163
BmgT120I	GGNCC	5 cut(s)	59, 119, 440, 508, 743
BmiI	GGNNCC	2 cut(s)	60, 222
BmrFI	CCNGG	4 cut(s)	35, 36, 63, 71
BmrI	ACTGGG	1 cut(s)	11
BmsI	GCATC	2 cut(s)	56, 382
BmuI	ACTGGG	1 cut(s)	11
BpiI	GAAGAC	2 cut(s)	407, 993
Bpu10I	CCTNAGC	1 cut(s)	1051
BpuEI	CTTGAG	2 cut(s)	262, 719
BpuMI	CCSGG	3 cut(s)	35, 36, 71
BsaJI	CCNNGG	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	6 cut(s)	22, 101, 351, 448, 517, 679
Bse118I	RCCGGY	1 cut(s)	459
Bse1I	ACTGG	1 cut(s)	17
Bse3DI	GCAATG	2 cut(s)	579, 645
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	2 cut(s)	163, 910
BseLI	CCNNNNNNNGG	6 cut(s)	22, 101, 351, 448, 517, 679
BseMI	GCAATG	2 cut(s)	579, 645
BseMII	CTCAG	1 cut(s)	425
BseNI	ACTGG	1 cut(s)	17
BseRI	GAGGAG	3 cut(s)	114, 210, 739
BseXI	GCAGC	7 cut(s)	304, 553, 556, 573, 619, 673, 676
BseYI	CCCAGC	1 cut(s)	649
BsgI	GTGCAG	1 cut(s)	408
Bsh1236I	CGCG	1 cut(s)	498
BshFI	GGCC	4 cut(s)	120, 441, 459, 730
BsiHKCI	CYCGRG	2 cut(s)	34, 163
BsiSI	CCGG	3 cut(s)	35, 71, 460
BslFI	GGGAC	1 cut(s)	607
BslI	CCNNNNNNNGG	6 cut(s)	22, 101, 351, 448, 517, 679
BsmFI	GGGAC	1 cut(s)	607
BsmI	GAATGC	1 cut(s)	996
BsnI	GGCC	4 cut(s)	120, 441, 459, 730
BsoBI	CYCGRG	2 cut(s)	34, 163
Bsp143I	GATC	5 cut(s)	220, 322, 484, 736, 1045
BspACI	CCGC	2 cut(s)	86, 493
BspANI	GGCC	4 cut(s)	120, 441, 459, 730
BspCNI	CTCAG	1 cut(s)	424
BspFNI	CGCG	1 cut(s)	498
BspLI	GGNNCC	2 cut(s)	60, 222
BspMI	ACCTGC	1 cut(s)	496
BspPI	GGATC	3 cut(s)	215, 228, 317
BspQI	GCTCTTC	1 cut(s)	903
BspTI	CTTAAG	1 cut(s)	380
BsrDI	GCAATG	2 cut(s)	579, 645
BsrFI	RCCGGY	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	459
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	5 cut(s)	220, 322, 484, 736, 1045
Bst2UI	CCWGG	1 cut(s)	63
Bst6I	CTCTTC	3 cut(s)	21, 423, 903
BstAFI	CTTAAG	1 cut(s)	380
BstDEI	CTNAG	5 cut(s)	411, 533, 714, 1051, 1060
BstEII	GGTNACC	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	163, 910
BstFNI	CGCG	1 cut(s)	498
BstHHI	GCGC	1 cut(s)	498
BstKTI	GATC	5 cut(s)	223, 325, 487, 739, 1048
BstMBI	GATC	5 cut(s)	220, 322, 484, 736, 1045
BstMWI	GCNNNNNNNGC	6 cut(s)	431, 502, 538, 629, 771, 780
BstNI	CCWGG	1 cut(s)	63
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	4 cut(s)	33, 34, 61, 69
BstUI	CGCG	1 cut(s)	498
BstV1I	GCAGC	7 cut(s)	304, 553, 556, 573, 619, 673, 676
BstV2I	GAAGAC	2 cut(s)	407, 993
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	4 cut(s)	120, 441, 459, 730
BtsCI	GGATG	2 cut(s)	163, 910
BtsIMutI	CAGTG	1 cut(s)	24
BveI	ACCTGC	1 cut(s)	496
CfoI	GCGC	1 cut(s)	498
Cfr10I	RCCGGY	1 cut(s)	459
Cfr13I	GGNCC	5 cut(s)	59, 119, 440, 508, 743
Cfr9I	CCCGGG	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	13, 168
CviAII	CATG	3 cut(s)	151, 709, 1068
CviQI	GTAC	2 cut(s)	13, 168
DdeI	CTNAG	5 cut(s)	411, 533, 714, 1051, 1060
DpnI	GATC	5 cut(s)	222, 324, 486, 738, 1047
DpnII	GATC	5 cut(s)	220, 322, 484, 736, 1045
DrdI	GACNNNNNNGTC	1 cut(s)	506
DseDI	GACNNNNNNGTC	1 cut(s)	506
Eam1104I	CTCTTC	3 cut(s)	21, 423, 903
EarI	CTCTTC	3 cut(s)	21, 423, 903
Eco47I	GGWCC	3 cut(s)	59, 508, 743
Eco57I	CTGAAG	1 cut(s)	976
Eco88I	CYCGRG	2 cut(s)	34, 163
Eco91I	GGTNACC	1 cut(s)	65
EcoO109I	RGGNCCY	5 cut(s)	59, 119, 440, 508, 743
EcoO65I	GGTNACC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	61
FaeI	CATG	3 cut(s)	154, 712, 1071
FaiI	YATR	7 cut(s)	152, 228, 239, 659, 710, 837, 1069
FaqI	GGGAC	1 cut(s)	607
FatI	CATG	3 cut(s)	150, 708, 1067
FbaI	TGATCA	1 cut(s)	736
Fnu4HI	GCNGC	8 cut(s)	293, 494, 542, 545, 587, 608, 662, 665
FokI	GGATG	2 cut(s)	170, 917
Fsp4HI	GCNGC	8 cut(s)	293, 494, 542, 545, 587, 608, 662, 665
FspBI	CTAG	9 cut(s)	252, 437, 470, 555, 668, 747, 851, 914, 923
GlaI	GCGC	1 cut(s)	497
GluI	GCNGC	8 cut(s)	293, 494, 542, 545, 587, 608, 662, 665
GsaI	CCCAGC	1 cut(s)	653
HaeIII	GGCC	4 cut(s)	120, 441, 459, 730
HapII	CCGG	3 cut(s)	35, 71, 460
HhaI	GCGC	1 cut(s)	498
Hin1II	CATG	3 cut(s)	154, 712, 1071
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HindIII	AAGCTT	3 cut(s)	205, 280, 530
HinfI	GANTC	1 cut(s)	241
HpaII	CCGG	3 cut(s)	35, 71, 460
HphI	GGTGA	3 cut(s)	77, 88, 538
Hpy188I	TCNGA	5 cut(s)	108, 135, 177, 369, 847
Hpy188III	TCNNGA	2 cut(s)	326, 815
HpyAV	CCTTC	7 cut(s)	16, 257, 390, 417, 575, 673, 685
HpyCH4V	TGCA	8 cut(s)	47, 425, 589, 643, 661, 863, 874, 1007
HpyF10VI	GCNNNNNNNGC	6 cut(s)	431, 502, 538, 629, 771, 780
HpyF3I	CTNAG	5 cut(s)	411, 533, 714, 1051, 1060
Hsp92II	CATG	3 cut(s)	154, 712, 1071
HspAI	GCGC	1 cut(s)	496
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	5 cut(s)	220, 322, 484, 736, 1045
LguI	GCTCTTC	1 cut(s)	903
LmnI	GCTCC	2 cut(s)	189, 694
Lsp1109I	GCAGC	7 cut(s)	304, 553, 556, 573, 619, 673, 676
LweI	GCATC	2 cut(s)	56, 382
MaeI	CTAG	9 cut(s)	252, 437, 470, 555, 668, 747, 851, 914, 923
MaeIII	GTNAC	2 cut(s)	65, 1055
MalI	GATC	5 cut(s)	222, 324, 486, 738, 1047
MboI	GATC	5 cut(s)	220, 322, 484, 736, 1045
MboII	GAAGA	8 cut(s)	38, 410, 412, 920, 971, 998, 1031, 1037
MfeI	CAATTG	1 cut(s)	732
MflI	RGATCY	1 cut(s)	220
MluCI	AATT	4 cut(s)	271, 480, 732, 818
MmeI	TCCRAC	1 cut(s)	697
MroXI	GAANNNNTTC	1 cut(s)	938
MseI	TTAA	3 cut(s)	381, 390, 801
MspCI	CTTAAG	1 cut(s)	380
MspI	CCGG	3 cut(s)	35, 71, 460
MspR9I	CCNGG	4 cut(s)	35, 36, 63, 71
MunI	CAATTG	1 cut(s)	732
Mva1269I	GAATGC	1 cut(s)	996
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	498
MwoI	GCNNNNNNNGC	6 cut(s)	431, 502, 538, 629, 771, 780
NciI	CCSGG	3 cut(s)	35, 36, 71
NdeII	GATC	5 cut(s)	220, 322, 484, 736, 1045
NlaIII	CATG	3 cut(s)	154, 712, 1071
NlaIV	GGNNCC	2 cut(s)	60, 222
NmuCI	GTSAC	1 cut(s)	65
PciSI	GCTCTTC	1 cut(s)	903
PctI	GAATGC	1 cut(s)	996
PdmI	GAANNNNTTC	1 cut(s)	938
PfeI	GAWTC	1 cut(s)	241
PkrI	GCNGC	8 cut(s)	294, 495, 543, 546, 588, 609, 663, 666
PpuMI	RGGWCCY	3 cut(s)	59, 508, 743
Psp5II	RGGWCCY	3 cut(s)	59, 508, 743
Psp6I	CCWGG	1 cut(s)	61
PspEI	GGTNACC	1 cut(s)	65
PspFI	CCCAGC	1 cut(s)	649
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	60, 222
PspPI	GGNCC	5 cut(s)	59, 119, 440, 508, 743
PspPPI	RGGWCCY	3 cut(s)	59, 508, 743
PsrI	GAACNNNNNNTAC	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	2 cut(s)	14, 169
RsaNI	GTAC	2 cut(s)	13, 168
SapI	GCTCTTC	1 cut(s)	903
SaqAI	TTAA	3 cut(s)	381, 390, 801
SatI	GCNGC	8 cut(s)	293, 494, 542, 545, 587, 608, 662, 665
Sau3AI	GATC	5 cut(s)	220, 322, 484, 736, 1045
Sau96I	GGNCC	5 cut(s)	59, 119, 440, 508, 743
ScrFI	CCNGG	4 cut(s)	35, 36, 63, 71
SfaNI	GCATC	2 cut(s)	56, 382
SinI	GGWCC	3 cut(s)	59, 508, 743
SmaI	CCCGGG	1 cut(s)	36
SmlI	CTYRAG	3 cut(s)	277, 380, 698
SmoI	CTYRAG	3 cut(s)	277, 380, 698
Sse9I	AATT	4 cut(s)	271, 480, 732, 818
SsiI	CCGC	2 cut(s)	86, 493
SspMI	CTAG	9 cut(s)	252, 437, 470, 555, 668, 747, 851, 914, 923
StyD4I	CCNGG	4 cut(s)	33, 34, 61, 69
TaqI	TCGA	2 cut(s)	770, 942
TasI	AATT	4 cut(s)	271, 480, 732, 818
TauI	GCSGC	1 cut(s)	496
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	3 cut(s)	381, 390, 801
Tru9I	TTAA	3 cut(s)	381, 390, 801
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	7 cut(s)	292, 541, 544, 586, 607, 661, 664
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	6 cut(s)	17, 254, 852, 921, 1038, 1056
TspMI	CCCGGG	1 cut(s)	34
TspRI	CASTG	1 cut(s)	24
Vha464I	CTTAAG	1 cut(s)	380
VpaK11BI	GGWCC	3 cut(s)	59, 508, 743
XapI	RAATTY	1 cut(s)	818
XmaI	CCCGGG	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	938
XspI	CTAG	9 cut(s)	252, 437, 470, 555, 668, 747, 851, 914, 923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.