Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005620

Physical Location & Seq

Genomic Coordinates Reverse (-)

20958126 .. 20960412

Gene Structure 2287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g20460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGACAACTGCAGCTCTGCCTTTTTTCTTGCATTTCAACAGCAACCCATTGAAGGAAGAGTACCCGGGCTCGAGTTCGTCGCAACCAGGTCCGGGTTTCGACCAGATGGTGATGACGATCCCGCCGCAGCCGATGGAGGGCCTGAACGACATGGGCCCTCCGCCGTTTCTGAACAAGACGTACGACATGGTGGACGACTCGGGGTCGAACGGGGTCGTCTCGTGGAGCAGAGGAGGGGCTAGCTTTGTTGTTTGGGACCCACATACTTTTGTGATGAGCCTCCTACCCAAGTACTTCAAGCACAATAATTTCTCAAGCTTTGTGAGGCAGCTCAACACTTACGGTTTTAGAAAGGTTGATCGATCTAACAGATGGGAGTTTGCCAATGACGGATTTGTAAGGGGTCAGAAGCATCTTTTGAAGAACATTAAAAGAAGGAAAGCACCTTCGCAGCCTTTTCCGGCACAGCAAGCTGTTGGACCTTGCATGGAATTAGGCCACTTTGGGATAGATGGAGAAGTTGATCGTTTGCGGCATGATAAGCAGGTTCTAATGATGGAACTAGTGAAGCTTAGGCAGCAGCAGCAGAGTACTAGAGCCTACCTTCAGGCCATGGAGCAAAGGTTACAGGGGACAGAACTAAAGCAGCAGCAGATGATGTCTTTCTTGGCAAGGGCAATGCAGAACCCGGCTTTTATACAGCAGCTAGTCCAACAGAAGGAGAAAAAAAAGGAGCTTGAAGAGGCAATGACTAAGAAAAGGAGGAGGCCAATTGATCAAGGACTTAGTGGTGTTGGTGGTGGCGAATCAAACCAGGTTAAAAGGGAGCCTCCTGAATTTGGAGATTGTGAGTATGAAATGTCGGAGCTTGAAGCACTTGCGATGGAAATGCAAGGATTAGGTAAGGTGGGAAAGGAACAGGAGGAAGTGGTAGAGCCACTAGATAGCGGGGATAAAGAGCTTGATGAAGGATTTTGGGAAGAACTATTGAGTGAGAGGTTTGAGGGAGACTCAACCATTCCGAGTGCTGACGTAGGCGAAGATGAAGATGTTATTATCTTGGCTGATTACTTTGGTTCATGGCCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0042802 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

364

Amino Acids

41.21

Weight (kDa)

5.17

Isoelectric Point (pI)

55.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51910
fragaria_vesca	FvH4_2g23000 FvH4_2g23000
malus_domestica	MD03G1258300.v1.1 MD11G1278900.v1.1
prunus_persica	Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1
pyrus_communis	pycom03g20460 pycom11g24650
rosa_chinensis	RchiOBHm_Chr6g0290041
rosa_laevigata	RLG00000012252
rosa_multiflora	Rmu_co8347871.1_g000001 Rmu_sc0002902.1_g000045 Rmu_sc0003927.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177400
rosa_rugosa	Rorug06G0208300 Rorug06G0208400
rosa_samantha	Rh6AG319900 Rh6BG327000 Rh6CG332800 Rh6DG318700
rosa_wichuraiana	Rw6G027600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	535
AciI	CCGC	5 cut(s)	122, 125, 161, 532, 948
AclWI	GGATC	1 cut(s)	112
AcoI	YGGCCR	1 cut(s)	1082
AcsI	RAATTY	1 cut(s)	836
AcuI	CTGAAG	1 cut(s)	590
AfaI	GTAC	4 cut(s)	62, 182, 293, 592
AfiI	CCNNNNNNNGG	5 cut(s)	52, 92, 137, 718, 839
AgsI	TTSAA	6 cut(s)	37, 52, 298, 421, 740, 872
AhdI	GACNNNNNGTC	1 cut(s)	202
AhlI	ACTAGT	1 cut(s)	562
AjnI	CCWGG	2 cut(s)	85, 813
Alw26I	GTCTC	2 cut(s)	223, 1002
AlwI	GGATC	1 cut(s)	112
Ama87I	CYCGRG	3 cut(s)	64, 70, 199
AoxI	GGCC	6 cut(s)	139, 154, 496, 609, 767, 1082
ApaI	GGGCCC	1 cut(s)	158
ApoI	RAATTY	1 cut(s)	836
AspS9I	GGNCC	6 cut(s)	89, 139, 154, 155, 256, 479
AsuC2I	CCSGG	4 cut(s)	65, 66, 93, 689
AsuHPI	GGTGA	1 cut(s)	121
AsuNHI	GCTAGC	1 cut(s)	239
AvaI	CYCGRG	3 cut(s)	64, 70, 199
AvaII	GGWCC	3 cut(s)	89, 256, 479
BaeGI	GKGCMC	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	1084
BanII	GRGCYC	2 cut(s)	71, 158
BarI	GAAGNNNNNNTAC	2 cut(s)	44, 76
BauI	CACGAG	1 cut(s)	220
BccI	CCATC	6 cut(s)	100, 127, 366, 506, 550, 877
BceAI	ACGGC	1 cut(s)	148
BcgI	CGANNNNNNTGC	2 cut(s)	871, 905
BciT130I	CCWGG	2 cut(s)	87, 815
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	4 cut(s)	65, 66, 93, 689
BcoDI	GTCTC	2 cut(s)	223, 1002
BcuI	ACTAGT	1 cut(s)	562
BfaI	CTAG	5 cut(s)	240, 563, 594, 707, 941
BfmI	CTRYAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	535
BmcAI	AGTACT	2 cut(s)	293, 592
Bme1390I	CCNGG	6 cut(s)	65, 66, 87, 93, 689, 815
Bme18I	GGWCC	3 cut(s)	89, 256, 479
BmeRI	GACNNNNNGTC	1 cut(s)	202
BmeT110I	CYCGRG	3 cut(s)	64, 70, 199
BmgT120I	GGNCC	6 cut(s)	89, 139, 154, 155, 256, 479
BmiI	GGNNCC	4 cut(s)	156, 257, 258, 828
BmrFI	CCNGG	6 cut(s)	65, 66, 87, 93, 689, 815
BmsI	GCATC	1 cut(s)	421
BmtI	GCTAGC	1 cut(s)	243
BplI	GAGNNNNNCTC	2 cut(s)	995, 1027
Bpu10I	CCTNAGC	1 cut(s)	572
BpuEI	CTTGAG	1 cut(s)	298
BpuMI	CCSGG	4 cut(s)	65, 66, 93, 689
Bsa29I	ATCGAT	1 cut(s)	361
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	64, 612
BsaXI	ACNNNNNCTCC	2 cut(s)	608, 638
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 92, 137, 718, 839
Bse3DI	GCAATG	2 cut(s)	684, 753
Bse8I	GATNNNNATC	1 cut(s)	116
BseBI	CCWGG	2 cut(s)	87, 815
BseCI	ATCGAT	1 cut(s)	361
BseDI	CCNNGG	2 cut(s)	64, 612
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	5 cut(s)	52, 92, 137, 718, 839
BseMI	GCAATG	2 cut(s)	684, 753
BseRI	GAGGAG	2 cut(s)	246, 778
BseSI	GKGCMC	1 cut(s)	158
BshFI	GGCC	6 cut(s)	141, 156, 498, 611, 769, 1084
BshVI	ATCGAT	1 cut(s)	361
BsiHKCI	CYCGRG	3 cut(s)	64, 70, 199
BsiSI	CCGG	4 cut(s)	65, 92, 461, 689
BsiWI	CGTACG	1 cut(s)	180
BslFI	GGGAC	2 cut(s)	269, 646
BslI	CCNNNNNNNGG	5 cut(s)	52, 92, 137, 718, 839
BsmAI	GTCTC	2 cut(s)	223, 1002
BsmBI	CGTCTC	1 cut(s)	223
BsmFI	GGGAC	2 cut(s)	269, 646
BsnI	GGCC	6 cut(s)	141, 156, 498, 611, 769, 1084
BsoBI	CYCGRG	3 cut(s)	64, 70, 199
Bsp120I	GGGCCC	1 cut(s)	154
Bsp1286I	GDGCHC	2 cut(s)	71, 158
Bsp143I	GATC	5 cut(s)	117, 358, 362, 523, 775
Bsp19I	CCATGG	1 cut(s)	612
BspACI	CCGC	5 cut(s)	122, 125, 161, 532, 948
BspANI	GGCC	6 cut(s)	141, 156, 498, 611, 769, 1084
BspDI	ATCGAT	1 cut(s)	361
BspLI	GGNNCC	4 cut(s)	156, 257, 258, 828
BspMAI	CTGCAG	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	535
BspOI	GCTAGC	1 cut(s)	243
BspPI	GGATC	1 cut(s)	112
BsrDI	GCAATG	2 cut(s)	684, 753
BssECI	CCNNGG	2 cut(s)	64, 612
BssMI	GATC	5 cut(s)	117, 358, 362, 523, 775
BssSI	CACGAG	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	612
Bst2BI	CACGAG	1 cut(s)	220
Bst2UI	CCWGG	2 cut(s)	87, 815
Bst4CI	ACNGT	1 cut(s)	344
Bst6I	CTCTTC	2 cut(s)	51, 735
BstC8I	GCNNGC	2 cut(s)	241, 471
BstDEI	CTNAG	3 cut(s)	572, 753, 785
BstDSI	CCRYGG	1 cut(s)	612
BstKTI	GATC	5 cut(s)	120, 361, 365, 526, 778
BstMAI	GTCTC	2 cut(s)	223, 1002
BstMBI	GATC	5 cut(s)	117, 358, 362, 523, 775
BstMWI	GCNNNNNNNGC	4 cut(s)	470, 541, 577, 583
BstNI	CCWGG	2 cut(s)	87, 815
BstSCI	CCNGG	6 cut(s)	63, 64, 85, 91, 687, 813
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	158
Bsu15I	ATCGAT	1 cut(s)	361
BsuRI	GGCC	6 cut(s)	141, 156, 498, 611, 769, 1084
BsuTUI	ATCGAT	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	612
BtgZI	GCGATG	1 cut(s)	896
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	2 cut(s)	241, 471
Cfr13I	GGNCC	6 cut(s)	89, 139, 154, 155, 256, 479
Cfr9I	CCCGGG	1 cut(s)	64
ClaI	ATCGAT	1 cut(s)	361
CsiI	ACCWGGT	2 cut(s)	85, 813
Csp6I	GTAC	4 cut(s)	61, 181, 292, 591
CviAII	CATG	6 cut(s)	151, 187, 487, 536, 613, 1080
CviQI	GTAC	4 cut(s)	61, 181, 292, 591
DdeI	CTNAG	3 cut(s)	572, 753, 785
DpnI	GATC	5 cut(s)	119, 360, 364, 525, 777
DpnII	GATC	5 cut(s)	117, 358, 362, 523, 775
DriI	GACNNNNNGTC	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	1082
Eam1104I	CTCTTC	2 cut(s)	51, 735
Eam1105I	GACNNNNNGTC	1 cut(s)	202
EarI	CTCTTC	2 cut(s)	51, 735
EciI	GGCGGA	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	612
Eco24I	GRGCYC	2 cut(s)	71, 158
Eco47I	GGWCC	3 cut(s)	89, 256, 479
Eco57I	CTGAAG	1 cut(s)	590
Eco88I	CYCGRG	3 cut(s)	64, 70, 199
EcoO109I	RGGNCCY	3 cut(s)	139, 155, 256
EcoRII	CCWGG	2 cut(s)	85, 813
EcoT14I	CCWWGG	1 cut(s)	612
EcoT38I	GRGCYC	2 cut(s)	71, 158
ErhI	CCWWGG	1 cut(s)	612
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	6 cut(s)	154, 190, 490, 539, 616, 1083
FaiI	YATR	9 cut(s)	152, 188, 264, 488, 537, 614, 698, 855, 1081
FaqI	GGGAC	2 cut(s)	269, 646
FatI	CATG	6 cut(s)	150, 186, 486, 535, 612, 1079
FauI	CCCGC	2 cut(s)	129, 941
FbaI	TGATCA	1 cut(s)	775
FriOI	GRGCYC	2 cut(s)	71, 158
FspBI	CTAG	5 cut(s)	240, 563, 594, 707, 941
HaeIII	GGCC	6 cut(s)	141, 156, 498, 611, 769, 1084
HapII	CCGG	4 cut(s)	65, 92, 461, 689
Hin1II	CATG	6 cut(s)	154, 190, 490, 539, 616, 1083
HindIII	AAGCTT	2 cut(s)	316, 569
HinfI	GANTC	3 cut(s)	197, 806, 1010
HpaII	CCGG	4 cut(s)	65, 92, 461, 689
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	4 cut(s)	171, 408, 865, 1023
Hpy188III	TCNNGA	1 cut(s)	833
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	6 cut(s)	46, 429, 456, 614, 712, 962
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	2 cut(s)	179, 1032
HpyCH4V	TGCA	5 cut(s)	11, 31, 486, 682, 892
HpyF10VI	GCNNNNNNNGC	4 cut(s)	470, 541, 577, 583
HpyF3I	CTNAG	3 cut(s)	572, 753, 785
HpySE526I	ACGT	2 cut(s)	179, 1032
Hsp92II	CATG	6 cut(s)	154, 190, 490, 539, 616, 1083
KflI	GGGWCCC	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	5 cut(s)	117, 358, 362, 523, 775
LmnI	GCTCC	5 cut(s)	225, 616, 733, 826, 865
LweI	GCATC	1 cut(s)	421
MabI	ACCWGGT	2 cut(s)	85, 813
MaeI	CTAG	5 cut(s)	240, 563, 594, 707, 941
MaeII	ACGT	2 cut(s)	179, 1032
MaeIII	GTNAC	1 cut(s)	624
MalI	GATC	5 cut(s)	119, 360, 364, 525, 777
MboI	GATC	5 cut(s)	117, 358, 362, 523, 775
MboII	GAAGA	6 cut(s)	68, 433, 752, 992, 1052, 1058
MfeI	CAATTG	1 cut(s)	771
MhlI	GDGCHC	2 cut(s)	71, 158
MlsI	TGGCCA	1 cut(s)	1084
MluCI	AATT	4 cut(s)	307, 491, 771, 836
MluNI	TGGCCA	1 cut(s)	1084
MlyI	GAGTC	2 cut(s)	191, 1004
MmeI	TCCRAC	3 cut(s)	457, 736, 843
Mox20I	TGGCCA	1 cut(s)	1084
MscI	TGGCCA	1 cut(s)	1084
MseI	TTAA	2 cut(s)	429, 819
Msp20I	TGGCCA	1 cut(s)	1084
MspI	CCGG	4 cut(s)	65, 92, 461, 689
MspR9I	CCNGG	6 cut(s)	65, 66, 87, 93, 689, 815
MunI	CAATTG	1 cut(s)	771
MvaI	CCWGG	2 cut(s)	87, 815
MwoI	GCNNNNNNNGC	4 cut(s)	470, 541, 577, 583
NciI	CCSGG	4 cut(s)	65, 66, 93, 689
NcoI	CCATGG	1 cut(s)	612
NdeII	GATC	5 cut(s)	117, 358, 362, 523, 775
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	6 cut(s)	154, 190, 490, 539, 616, 1083
NlaIV	GGNNCC	4 cut(s)	156, 257, 258, 828
PaeR7I	CTCGAG	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	806
Pfl23II	CGTACG	1 cut(s)	180
PleI	GAGTC	2 cut(s)	191, 1004
PpsI	GAGTC	2 cut(s)	191, 1004
PpuMI	RGGWCCY	1 cut(s)	256
Psp5II	RGGWCCY	1 cut(s)	256
Psp6I	CCWGG	2 cut(s)	85, 813
PspGI	CCWGG	2 cut(s)	85, 813
PspLI	CGTACG	1 cut(s)	180
PspN4I	GGNNCC	4 cut(s)	156, 257, 258, 828
PspOMI	GGGCCC	1 cut(s)	154
PspPI	GGNCC	6 cut(s)	89, 139, 154, 155, 256, 479
PspPPI	RGGWCCY	1 cut(s)	256
PspXI	VCTCGAGB	1 cut(s)	70
PsrI	GAACNNNNNNTAC	2 cut(s)	164, 196
PstI	CTGCAG	1 cut(s)	13
RsaI	GTAC	4 cut(s)	62, 182, 293, 592
RsaNI	GTAC	4 cut(s)	61, 181, 292, 591
SaqAI	TTAA	2 cut(s)	429, 819
Sau3AI	GATC	5 cut(s)	117, 358, 362, 523, 775
Sau96I	GGNCC	6 cut(s)	89, 139, 154, 155, 256, 479
ScaI	AGTACT	2 cut(s)	293, 592
SchI	GAGTC	2 cut(s)	191, 1004
ScrFI	CCNGG	6 cut(s)	65, 66, 87, 93, 689, 815
SduI	GDGCHC	2 cut(s)	71, 158
SexAI	ACCWGGT	2 cut(s)	85, 813
SfaNI	GCATC	1 cut(s)	421
SfcI	CTRYAG	1 cut(s)	9
Sfr274I	CTCGAG	1 cut(s)	70
SinI	GGWCC	3 cut(s)	89, 256, 479
SlaI	CTCGAG	1 cut(s)	70
SmaI	CCCGGG	1 cut(s)	66
SmlI	CTYRAG	2 cut(s)	70, 313
SmoI	CTYRAG	2 cut(s)	70, 313
SpeI	ACTAGT	1 cut(s)	562
Sse9I	AATT	4 cut(s)	307, 491, 771, 836
SsiI	CCGC	5 cut(s)	122, 125, 161, 532, 948
SspMI	CTAG	5 cut(s)	240, 563, 594, 707, 941
StyD4I	CCNGG	6 cut(s)	63, 64, 85, 91, 687, 813
StyI	CCWWGG	1 cut(s)	612
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	2 cut(s)	182, 1035
TaqI	TCGA	4 cut(s)	71, 99, 206, 361
TasI	AATT	4 cut(s)	307, 491, 771, 836
TatI	WGTACW	2 cut(s)	291, 590
TauI	GCSGC	2 cut(s)	127, 535
TfiI	GAWTC	1 cut(s)	806
Tru1I	TTAA	2 cut(s)	429, 819
Tru9I	TTAA	2 cut(s)	429, 819
TspDTI	ATGAA	4 cut(s)	870, 981, 1059, 1068
TspGWI	ACGGA	1 cut(s)	405
TspMI	CCCGGG	1 cut(s)	64
VpaK11BI	GGWCC	3 cut(s)	89, 256, 479
XapI	RAATTY	1 cut(s)	836
XhoI	CTCGAG	1 cut(s)	70
XmaI	CCCGGG	1 cut(s)	64
XspI	CTAG	5 cut(s)	240, 563, 594, 707, 941
ZrmI	AGTACT	2 cut(s)	293, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.