RLG00000012252

Heat Stress Transcription Factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
16696910 .. 16698405
1496 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012252

Sequence Viewer

Length: 1086 bp
ATGAATTACTTGTACCCAGTGAAGGAAGAGTACTCGGGCGGGTCGAGTTCATCGCAGTGGAGCGGGGATCCTCCGATGATGGTGGCTCCACCGCAGCCGATGGAGGGGCTGAATGACACCGGGCCTCCTCCATTTCTGAACAAGACTTATGACATGGTGGATGACCCGAGTACTAATCGGATAGTCTCGTGGAGCAGAGGAGGGGGTAGCTTTGTGGTTTGGGACCCTCATTCGTTTGTGATGAACCTCCTGCCTAGACACTTCAAGCACAATAATTTCTCCAGCTTTGTCAGGCAGCTTAACACTTACGGCTTTAGAAAGGTTGATCCGGATAGGTGGGAGTTTGCCAATGAAGGATTTTTAAGGGGCCAGAAGCATCTCCTAAAGAACATTAGGAGAAGGAAGACACCTTCTCAGCCTATTCCAGCACACCAAACGCTAGGCCCTTGTGTTGAAGTAGGCCGGTTTGGGCTAGATGGAGAAATTGATCGTTTGCGACGTGACAAGCAGGTTCTCATGATGGAGTTGGTGAAGCTTAGACAGCAGCAGCAGAGTACTAGAGCTTGCCTTCAAGCCATGGAACAAAGGCTAAAAGGGACAGAAATGAAGCAGCAACAAATGATGGCTTTCTTGGCCAGGGCACTGCAGAACCCGGCTTTCCTGCAGCAGCTAGTCCAACATAAGGAGAAACGGAAGGAGCTTGAACAAGCCGTGACTAAGAAAAGGAGAAGGCCGATTGATCAAGGCCCTAGTGGCTTTGGTGGTGGTGAAACTAACCAAAGGGGCCAAGGAATTAACCCTGTTAAAGCTGAGCCTCTTGAATTTGGAGATGGTGAGTATGAAATGTCGGAGCTAGAAGCGCTTGCAATGGAAATGCAAGGATTTCATAAGGCACGAAAGGAACCGGAGGAAGAGTCAGAGCCCCTGGAAATTGGGGATAAAGAGCTTGATGAAGGATTTTGGGATGAACTATTTAGCGAGAGGTTTGAGGGGGACTTAAGCATACCATGTGCTGAAATAGGTGATGACGAAGATGTCATTATCTTGGCTGATCGCTTAGGTTACTTAGGTTCAAGCCCAAATTAG

Protein Analysis

362

Amino Acids

41.18

Weight (kDa)

5.48

Isoelectric Point (pI)

56.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 45 - 134 3.9e-30 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1034
Acc36I ACCTGC 1 cut(s) 499
AccBSI CCGCTC 1 cut(s) 63
AccIII TCCGGA 1 cut(s) 328
AciI CCGC 3 cut(s) 39, 63, 92
AclWI GGATC 3 cut(s) 62, 75, 320
AcoI YGGCCR 1 cut(s) 633
AcsI RAATTY 1 cut(s) 821
AfaI GTAC 4 cut(s) 14, 32, 172, 556
AfeI AGCGCT 1 cut(s) 861
AfiI CCNNNNNNNGG 3 cut(s) 22, 104, 682
AflII CTTAAG 1 cut(s) 997
AgsI TTSAA 6 cut(s) 265, 455, 572, 704, 821, 1074
AjiI CACGTC 1 cut(s) 500
AjnI CCWGG 2 cut(s) 635, 924
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 3 cut(s) 62, 75, 320
Ama87I CYCGRG 2 cut(s) 34, 166
Aor13HI TCCGGA 1 cut(s) 328
Aor51HI AGCGCT 1 cut(s) 861
AoxI GGCC 8 cut(s) 122, 367, 442, 460, 633, 731, 745, 784
ApeKI GCWGC 7 cut(s) 94, 295, 544, 547, 610, 664, 667
ApoI RAATTY 1 cut(s) 821
AspLEI GCGC 1 cut(s) 862
AspS9I GGNCC 6 cut(s) 122, 223, 367, 443, 746, 784
AsuC2I CCSGG 2 cut(s) 121, 653
AsuHPI GGTGA 4 cut(s) 541, 779, 845, 1034
AvaI CYCGRG 2 cut(s) 34, 166
AvaII GGWCC 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 643
BalI TGGCCA 1 cut(s) 635
BamHI GGATCC 1 cut(s) 67
BanII GRGCYC 1 cut(s) 924
BarI GAAGNNNNNNTAC 2 cut(s) 14, 46
BauI CACGAG 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 410
BbvI GCAGC 7 cut(s) 106, 307, 556, 559, 622, 676, 679
BccI CCATC 6 cut(s) 73, 94, 470, 514, 616, 824
BceAI ACGGC 2 cut(s) 325, 695
BciT130I CCWGG 2 cut(s) 637, 926
BclI TGATCA 1 cut(s) 739
BcnI CCSGG 2 cut(s) 121, 653
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 7 cut(s) 255, 440, 473, 558, 671, 750, 854
BfmI CTRYAG 2 cut(s) 644, 662
BfoI RGCGCY 1 cut(s) 863
BfrI CTTAAG 1 cut(s) 997
BfuAI ACCTGC 1 cut(s) 499
BglI GCCNNNNNGGC 1 cut(s) 753
BisI GCNGC 7 cut(s) 95, 296, 545, 548, 611, 665, 668
BlpI GCTNAGC 1 cut(s) 810
BlsI GCNGC 7 cut(s) 96, 297, 546, 549, 612, 666, 669
BmcAI AGTACT 3 cut(s) 32, 172, 556
Bme1390I CCNGG 4 cut(s) 121, 637, 653, 926
Bme18I GGWCC 1 cut(s) 223
BmeT110I CYCGRG 2 cut(s) 34, 166
BmgBI CACGTC 1 cut(s) 500
BmgT120I GGNCC 6 cut(s) 122, 223, 367, 443, 746, 784
BmiI GGNNCC 7 cut(s) 69, 87, 224, 225, 368, 785, 903
BmrFI CCNGG 4 cut(s) 121, 637, 653, 926
BmrI ACTGGG 1 cut(s) 11
BmsI GCATC 1 cut(s) 385
BmuI ACTGGG 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 410
BpmI CTGGAG 1 cut(s) 265
Bpu10I CCTNAGC 1 cut(s) 1057
Bpu1102I GCTNAGC 1 cut(s) 810
BpuMI CCSGG 2 cut(s) 121, 653
BsaJI CCNNGG 4 cut(s) 576, 636, 787, 924
BsaWI WCCGGW 2 cut(s) 328, 904
BsaXI ACNNNNNCTCC 4 cut(s) 109, 139, 899, 929
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 104, 682
Bse118I RCCGGY 1 cut(s) 462
Bse1I ACTGG 1 cut(s) 17
Bse3DI GCAATG 1 cut(s) 873
BseAI TCCGGA 1 cut(s) 328
BseBI CCWGG 2 cut(s) 637, 926
BseDI CCNNGG 4 cut(s) 576, 636, 787, 924
BseGI GGATG 2 cut(s) 166, 970
BseLI CCNNNNNNNGG 3 cut(s) 22, 104, 682
BseMI GCAATG 1 cut(s) 873
BseMII CTCAG 2 cut(s) 428, 801
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 2 cut(s) 117, 213
BseSI GKGCMC 1 cut(s) 643
BseXI GCAGC 7 cut(s) 106, 307, 556, 559, 622, 676, 679
BshFI GGCC 8 cut(s) 124, 369, 444, 462, 635, 733, 747, 786
BsiHKCI CYCGRG 2 cut(s) 34, 166
BsiSI CCGG 5 cut(s) 120, 329, 463, 653, 905
BslFI GGGAC 3 cut(s) 236, 610, 1007
BslI CCNNNNNNNGG 3 cut(s) 22, 104, 682
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 3 cut(s) 236, 610, 1007
BsnI GGCC 8 cut(s) 124, 369, 444, 462, 635, 733, 747, 786
BsoBI CYCGRG 2 cut(s) 34, 166
Bsp1286I GDGCHC 2 cut(s) 643, 924
Bsp13I TCCGGA 1 cut(s) 328
Bsp143I GATC 5 cut(s) 67, 325, 487, 739, 1051
Bsp1720I GCTNAGC 1 cut(s) 810
Bsp19I CCATGG 1 cut(s) 576
BspACI CCGC 3 cut(s) 39, 63, 92
BspANI GGCC 8 cut(s) 124, 369, 444, 462, 635, 733, 747, 786
BspCNI CTCAG 2 cut(s) 427, 802
BspEI TCCGGA 1 cut(s) 328
BspHI TCATGA 1 cut(s) 516
BspLI GGNNCC 7 cut(s) 69, 87, 224, 225, 368, 785, 903
BspMAI CTGCAG 2 cut(s) 648, 666
BspMI ACCTGC 1 cut(s) 499
BspPI GGATC 3 cut(s) 62, 75, 320
BspTI CTTAAG 1 cut(s) 997
BsrBI CCGCTC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 873
BsrFI RCCGGY 1 cut(s) 462
BsrI ACTGG 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 462
BssECI CCNNGG 4 cut(s) 576, 636, 787, 924
BssMI GATC 5 cut(s) 67, 325, 487, 739, 1051
BssSI CACGAG 1 cut(s) 187
BssT1I CCWWGG 2 cut(s) 576, 787
Bst2BI CACGAG 1 cut(s) 187
Bst2UI CCWGG 2 cut(s) 637, 926
Bst6I CTCTTC 2 cut(s) 21, 906
BstAFI CTTAAG 1 cut(s) 997
BstC8I GCNNGC 2 cut(s) 565, 864
BstDEI CTNAG 6 cut(s) 414, 536, 717, 810, 1057, 1066
BstDSI CCRYGG 1 cut(s) 576
BstF5I GGATG 2 cut(s) 166, 970
BstH2I RGCGCY 1 cut(s) 863
BstHHI GCGC 1 cut(s) 862
BstKTI GATC 5 cut(s) 70, 328, 490, 742, 1054
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 5 cut(s) 67, 325, 487, 739, 1051
BstMWI GCNNNNNNNGC 4 cut(s) 541, 632, 753, 859
BstNI CCWGG 2 cut(s) 637, 926
BstSCI CCNGG 4 cut(s) 119, 635, 651, 924
BstSFI CTRYAG 2 cut(s) 644, 662
BstSLI GKGCMC 1 cut(s) 643
BstV1I GCAGC 7 cut(s) 106, 307, 556, 559, 622, 676, 679
BstV2I GAAGAC 1 cut(s) 410
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BsuRI GGCC 8 cut(s) 124, 369, 444, 462, 635, 733, 747, 786
BtgI CCRYGG 1 cut(s) 576
BtgZI GCGATG 1 cut(s) 36
BtrI CACGTC 1 cut(s) 500
BtsCI GGATG 2 cut(s) 166, 970
BtsI GCAGTG 2 cut(s) 62, 641
BtsIMutI CAGTG 3 cut(s) 24, 62, 641
BveI ACCTGC 1 cut(s) 499
Cac8I GCNNGC 2 cut(s) 565, 864
CciI TCATGA 1 cut(s) 516
CfoI GCGC 1 cut(s) 862
Cfr10I RCCGGY 1 cut(s) 462
Cfr13I GGNCC 6 cut(s) 122, 223, 367, 443, 746, 784
Csp6I GTAC 4 cut(s) 13, 31, 171, 555
CviAII CATG 4 cut(s) 154, 517, 577, 1008
CviQI GTAC 4 cut(s) 13, 31, 171, 555
DdeI CTNAG 6 cut(s) 414, 536, 717, 810, 1057, 1066
DpnI GATC 5 cut(s) 69, 327, 489, 741, 1053
DpnII GATC 5 cut(s) 67, 325, 487, 739, 1051
DrdI GACNNNNNNGTC 1 cut(s) 1034
DseDI GACNNNNNNGTC 1 cut(s) 1034
EaeI YGGCCR 1 cut(s) 633
Eam1104I CTCTTC 2 cut(s) 21, 906
EarI CTCTTC 2 cut(s) 21, 906
Eco130I CCWWGG 2 cut(s) 576, 787
Eco24I GRGCYC 1 cut(s) 924
Eco47I GGWCC 1 cut(s) 223
Eco47III AGCGCT 1 cut(s) 861
Eco88I CYCGRG 2 cut(s) 34, 166
EcoO109I RGGNCCY 3 cut(s) 223, 443, 746
EcoRII CCWGG 2 cut(s) 635, 924
EcoT14I CCWWGG 2 cut(s) 576, 787
EcoT38I GRGCYC 1 cut(s) 924
ErhI CCWWGG 2 cut(s) 576, 787
FaeI CATG 4 cut(s) 157, 520, 580, 1011
FaiI YATR 9 cut(s) 150, 155, 518, 578, 681, 840, 888, 1004, 1009
FaqI GGGAC 3 cut(s) 236, 610, 1007
FatI CATG 4 cut(s) 153, 516, 576, 1007
FauI CCCGC 2 cut(s) 32, 56
FbaI TGATCA 1 cut(s) 739
Fnu4HI GCNGC 7 cut(s) 95, 296, 545, 548, 611, 665, 668
FokI GGATG 2 cut(s) 173, 977
FriOI GRGCYC 1 cut(s) 924
Fsp4HI GCNGC 7 cut(s) 95, 296, 545, 548, 611, 665, 668
FspBI CTAG 7 cut(s) 255, 440, 473, 558, 671, 750, 854
GlaI GCGC 1 cut(s) 861
GluI GCNGC 7 cut(s) 95, 296, 545, 548, 611, 665, 668
GsuI CTGGAG 1 cut(s) 265
HaeII RGCGCY 1 cut(s) 863
HaeIII GGCC 8 cut(s) 124, 369, 444, 462, 635, 733, 747, 786
HapII CCGG 5 cut(s) 120, 329, 463, 653, 905
HhaI GCGC 1 cut(s) 862
Hin1II CATG 4 cut(s) 157, 520, 580, 1011
Hin6I GCGC 1 cut(s) 860
HinP1I GCGC 1 cut(s) 860
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 1 cut(s) 914
HpaII CCGG 5 cut(s) 120, 329, 463, 653, 905
HphI GGTGA 4 cut(s) 541, 779, 845, 1034
Hpy188I TCNGA 5 cut(s) 75, 138, 180, 850, 919
Hpy188III TCNNGA 3 cut(s) 329, 517, 818
Hpy99I CGWCG 1 cut(s) 501
HpyAV CCTTC 8 cut(s) 16, 347, 393, 420, 578, 688, 723, 947
HpyCH4IV ACGT 1 cut(s) 499
HpyCH4V TGCA 4 cut(s) 646, 664, 866, 877
HpyF10VI GCNNNNNNNGC 4 cut(s) 541, 632, 753, 859
HpyF3I CTNAG 6 cut(s) 414, 536, 717, 810, 1057, 1066
HpySE526I ACGT 1 cut(s) 499
Hsp92II CATG 4 cut(s) 157, 520, 580, 1011
HspAI GCGC 1 cut(s) 860
KflI GGGWCCC 1 cut(s) 223
Kpn2I TCCGGA 1 cut(s) 328
Ksp22I TGATCA 1 cut(s) 739
Kzo9I GATC 5 cut(s) 67, 325, 487, 739, 1051
LmnI GCTCC 5 cut(s) 60, 91, 192, 697, 850
Lsp1109I GCAGC 7 cut(s) 106, 307, 556, 559, 622, 676, 679
LweI GCATC 1 cut(s) 385
MaeI CTAG 7 cut(s) 255, 440, 473, 558, 671, 750, 854
MaeII ACGT 1 cut(s) 499
MaeIII GTNAC 3 cut(s) 500, 712, 1061
MalI GATC 5 cut(s) 69, 327, 489, 741, 1053
MbiI CCGCTC 1 cut(s) 63
MboI GATC 5 cut(s) 67, 325, 487, 739, 1051
MboII GAAGA 4 cut(s) 38, 415, 923, 1043
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 2 cut(s) 643, 924
MlsI TGGCCA 1 cut(s) 635
MluCI AATT 7 cut(s) 4, 274, 483, 792, 821, 930, 1081
MluNI TGGCCA 1 cut(s) 635
MlyI GAGTC 1 cut(s) 923
MmeI TCCRAC 2 cut(s) 700, 828
Mox20I TGGCCA 1 cut(s) 635
MroI TCCGGA 1 cut(s) 328
MscI TGGCCA 1 cut(s) 635
MseI TTAA 5 cut(s) 300, 362, 795, 804, 998
MslI CAYNNNNRTG 1 cut(s) 55
Msp20I TGGCCA 1 cut(s) 635
MspCI CTTAAG 1 cut(s) 997
MspI CCGG 5 cut(s) 120, 329, 463, 653, 905
MspR9I CCNGG 4 cut(s) 121, 637, 653, 926
MvaI CCWGG 2 cut(s) 637, 926
MwoI GCNNNNNNNGC 4 cut(s) 541, 632, 753, 859
NciI CCSGG 2 cut(s) 121, 653
NcoI CCATGG 1 cut(s) 576
NdeII GATC 5 cut(s) 67, 325, 487, 739, 1051
NlaIII CATG 4 cut(s) 157, 520, 580, 1011
NlaIV GGNNCC 7 cut(s) 69, 87, 224, 225, 368, 785, 903
NmuCI GTSAC 2 cut(s) 500, 712
PagI TCATGA 1 cut(s) 516
PcsI WCGNNNNNNNCGW 2 cut(s) 41, 496
PkrI GCNGC 7 cut(s) 96, 297, 546, 549, 612, 666, 669
PleI GAGTC 1 cut(s) 922
PpsI GAGTC 1 cut(s) 922
PpuMI RGGWCCY 1 cut(s) 223
Psp5II RGGWCCY 1 cut(s) 223
Psp6I CCWGG 2 cut(s) 635, 924
PspGI CCWGG 2 cut(s) 635, 924
PspN4I GGNNCC 7 cut(s) 69, 87, 224, 225, 368, 785, 903
PspPI GGNCC 6 cut(s) 122, 223, 367, 443, 746, 784
PspPPI RGGWCCY 1 cut(s) 223
PstI CTGCAG 2 cut(s) 648, 666
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 4 cut(s) 14, 32, 172, 556
RsaNI GTAC 4 cut(s) 13, 31, 171, 555
RseI CAYNNNNRTG 1 cut(s) 55
SaqAI TTAA 5 cut(s) 300, 362, 795, 804, 998
SatI GCNGC 7 cut(s) 95, 296, 545, 548, 611, 665, 668
Sau3AI GATC 5 cut(s) 67, 325, 487, 739, 1051
Sau96I GGNCC 6 cut(s) 122, 223, 367, 443, 746, 784
ScaI AGTACT 3 cut(s) 32, 172, 556
SchI GAGTC 1 cut(s) 923
ScrFI CCNGG 4 cut(s) 121, 637, 653, 926
SduI GDGCHC 2 cut(s) 643, 924
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 2 cut(s) 644, 662
SinI GGWCC 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 997
SmoI CTYRAG 1 cut(s) 997
Sse9I AATT 7 cut(s) 4, 274, 483, 792, 821, 930, 1081
SsiI CCGC 3 cut(s) 39, 63, 92
SspMI CTAG 7 cut(s) 255, 440, 473, 558, 671, 750, 854
StyD4I CCNGG 4 cut(s) 119, 635, 651, 924
StyI CCWWGG 2 cut(s) 576, 787
TaiI ACGT 1 cut(s) 502
TaqI TCGA 1 cut(s) 44
TasI AATT 7 cut(s) 4, 274, 483, 792, 821, 930, 1081
TatI WGTACW 3 cut(s) 30, 170, 554
Tru1I TTAA 5 cut(s) 300, 362, 795, 804, 998
Tru9I TTAA 5 cut(s) 300, 362, 795, 804, 998
TscAI CASTG 3 cut(s) 24, 62, 648
TseFI GTSAC 2 cut(s) 500, 712
TseI GCWGC 7 cut(s) 94, 295, 544, 547, 610, 664, 667
Tsp45I GTSAC 2 cut(s) 500, 712
TspDTI ATGAA 9 cut(s) 17, 39, 257, 366, 620, 855, 875, 966, 981
TspGWI ACGGA 1 cut(s) 706
TspRI CASTG 3 cut(s) 24, 62, 648
Vha464I CTTAAG 1 cut(s) 997
VpaK11BI GGWCC 1 cut(s) 223
XapI RAATTY 1 cut(s) 821
XspI CTAG 7 cut(s) 255, 440, 473, 558, 671, 750, 854
ZrmI AGTACT 3 cut(s) 32, 172, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.