AT3G51980

Nucleotide exchange factor Fes1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009449
Physical Location & Seq
Reverse (-)
19285572 .. 19287552
1981 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51980.1

Sequence Viewer

Length: 1149 bp
ATGCCGACGATTTTCTTTTTCCGATATGTGTTTCTATTGGTGGTGATCTCATTGGTGGGTTTTTCGATCGCTGAGAAAGTTAACTCTTCCGGGGGAATGGTCTGGTCTAGTGTTAGAGATGAAGCCGAATTGGTAGAAGATTCCGGTGTGGTGATCGGAGAGCAAGATCAAATCGATGGTGGATTCTCTTCACTTGATGGGATGTTACACTGGGCAATAGGTCACTCGGATCCTGCGACATTGAAGGAAGCAGCTAAAGATGCAGAGAAGATGTCTTTGGATGAGTTACAGAAGCGTCAATTAGAGTTAAAGGAGCTGGTGGAGAAGCTGAAAATGCCGTCGAATGCGAAGTTGATGCAAATAGCGATAGATGACTTGAATAATTCATCCTTGTCTCTTGAAGATCGTCACCGTGCTTTGCAGGAACTTTTGATCCTCGTTGAACCTATTGATAATGCAAATGATTTGAGCAAATCAGGAGGGCTTAGAGTTGTAGCAGGAGAGCTTAATCATGATGACACAGAAGTAAGGAAACTAGCTGCGTGGGTGCTCGGGAAAGCTAGCCAAAACAATCCTTTTGTTCAAGAGCAGGTTCTTGAACTTGGAGCTTTAACAACACTAATAAAGATGGTAAACTCCAGCTCTACTGAAGAAGCTGTGAAAGCACTTTTTGCTGTTTCTGCCTTGATACGAAATAATATAGCTGGTCAGGACTTGTTTTTTGCAGCACATGGATACATTATGCTTCGGGATGTAATGAACAATGGGAGCTTGGATATGAAATTGAGACGGAAAGCTGTATTCTTAGTCGGTGATTTGGCTGAGTCTCAACTACAGAACACAGAGAAAGATGAACTTCCTATTTTCAAAGATCGTCTTTTCCTAAAGTCTGTTGTCGATTTGATTGTGGTGCTTGATCTTGATCTCCAAGAAAAGGCTCTTACAGCAATCCAAACTCTTCTTCAACTTAAATCCATAGAGCCTCAGGTTCTCAAAGAGTCCTGCGGGTTGGAAGAAGCATTAGAGAGAATGAAGCTACAGCTGGAGGAATCAATGGCGGATGAATACAAGAGAGACTATGCTGCAGATGTGGAGAGCATTCGTGGTGAAGTGGAACTGATCTTCCGCCAAAAGCTTGGACTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Fes1

Protein Analysis

382

Amino Acids

42.53

Weight (kDa)

4.75

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fes1 PF08609 65 - 156 5.6e-17 Nucleotide exchange factor Fes1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 580
AciI CCGC 3 cut(s) 1005, 1058, 1126
AclWI GGATC 3 cut(s) 224, 237, 427
AcuI CTGAAG 1 cut(s) 669
AfiI CCNNNNNNNGG 1 cut(s) 934
AgsI TTSAA 8 cut(s) 244, 379, 401, 443, 584, 599, 868, 965
AjuI GAANNNNNNNTTGG 4 cut(s) 260, 292, 945, 977
AloI GAACNNNNNNTCC 4 cut(s) 417, 449, 1107, 1139
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 4 cut(s) 399, 781, 831, 1068
AlwI GGATC 3 cut(s) 224, 237, 427
Ama87I CYCGRG 1 cut(s) 551
ApeKI GCWGC 4 cut(s) 251, 539, 725, 1082
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 5 cut(s) 55, 163, 401, 824, 1118
AsuNHI GCTAGC 1 cut(s) 560
AvaI CYCGRG 1 cut(s) 551
AxyI CCTNAGG 1 cut(s) 984
BamHI GGATCC 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 4 cut(s) 263, 526, 737, 1069
BccI CCATC 3 cut(s) 170, 191, 622
BceAI ACGGC 1 cut(s) 322
BcgI CGANNNNNNTGC 2 cut(s) 337, 371
BciVI GTATCC 1 cut(s) 728
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 4 cut(s) 399, 781, 831, 1068
BfaI CTAG 3 cut(s) 108, 536, 561
BfmI CTRYAG 3 cut(s) 833, 1037, 1083
BfuAI ACCTGC 1 cut(s) 580
BfuI GTATCC 1 cut(s) 728
BisI GCNGC 4 cut(s) 252, 540, 726, 1083
BlsI GCNGC 4 cut(s) 253, 541, 727, 1084
Bme1390I CCNGG 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 551
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 91
BmrI ACTGGG 1 cut(s) 220
BmsI GCATC 2 cut(s) 250, 345
BmtI GCTAGC 1 cut(s) 564
BmuI ACTGGG 1 cut(s) 220
BpmI CTGGAG 2 cut(s) 622, 1064
BpuMI CCSGG 1 cut(s) 91
Bsa29I ATCGAT 1 cut(s) 174
BsaBI GATNNNNATC 1 cut(s) 921
BsaJI CCNNGG 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 934
Bse1I ACTGG 1 cut(s) 215
Bse21I CCTNAGG 1 cut(s) 984
Bse8I GATNNNNATC 1 cut(s) 921
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 5 cut(s) 207, 286, 386, 757, 1066
BseJI GATNNNNATC 1 cut(s) 921
BseLI CCNNNNNNNGG 1 cut(s) 934
BseMII CTCAG 3 cut(s) 63, 813, 998
BseNI ACTGG 1 cut(s) 215
BseXI GCAGC 4 cut(s) 263, 526, 737, 1069
Bsh1285I CGRYCG 1 cut(s) 69
BshVI ATCGAT 1 cut(s) 174
BsiEI CGRYCG 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 552
BsiHKCI CYCGRG 1 cut(s) 551
BsiSI CCGG 2 cut(s) 90, 144
BslI CCNNNNNNNGG 1 cut(s) 934
BsmAI GTCTC 4 cut(s) 399, 781, 831, 1068
BsmBI CGTCTC 1 cut(s) 781
BsmI GAATGC 2 cut(s) 349, 1098
BsoBI CYCGRG 1 cut(s) 551
Bsp1286I GDGCHC 1 cut(s) 552
BspACI CCGC 3 cut(s) 1005, 1058, 1126
BspCNI CTCAG 3 cut(s) 64, 814, 997
BspDI ATCGAT 1 cut(s) 174
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 1 cut(s) 231
BspMAI CTGCAG 1 cut(s) 1087
BspMI ACCTGC 1 cut(s) 580
BspOI GCTAGC 1 cut(s) 564
BspPI GGATC 3 cut(s) 224, 237, 427
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 413
Bst6I CTCTTC 3 cut(s) 91, 193, 963
BstAPI GCANNNNNTGC 1 cut(s) 671
BstC8I GCNNGC 1 cut(s) 562
BstDEI CTNAG 5 cut(s) 72, 485, 805, 822, 984
BstF5I GGATG 5 cut(s) 207, 286, 386, 757, 1066
BstMAI GTCTC 4 cut(s) 399, 781, 831, 1068
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 6 cut(s) 260, 334, 662, 671, 680, 944
BstSCI CCNGG 1 cut(s) 89
BstSFI CTRYAG 3 cut(s) 833, 1037, 1083
BstV1I GCAGC 4 cut(s) 263, 526, 737, 1069
BstX2I RGATCY 1 cut(s) 229
BstXI CCANNNNNNTGG 1 cut(s) 1136
BstYI RGATCY 1 cut(s) 229
Bsu15I ATCGAT 1 cut(s) 174
Bsu36I CCTNAGG 1 cut(s) 984
BsuI GTATCC 1 cut(s) 728
BsuTUI ATCGAT 1 cut(s) 174
BtsCI GGATG 5 cut(s) 207, 286, 386, 757, 1066
BtsIMutI CAGTG 1 cut(s) 208
BveI ACCTGC 1 cut(s) 580
Cac8I GCNNGC 1 cut(s) 562
CciI TCATGA 1 cut(s) 511
ClaI ATCGAT 1 cut(s) 174
CseI GACGC 1 cut(s) 284
CviAII CATG 2 cut(s) 512, 731
DdeI CTNAG 5 cut(s) 72, 485, 805, 822, 984
Eam1104I CTCTTC 3 cut(s) 91, 193, 963
EarI CTCTTC 3 cut(s) 91, 193, 963
EciI GGCGGA 2 cut(s) 1073, 1115
Eco57I CTGAAG 1 cut(s) 669
Eco81I CCTNAGG 1 cut(s) 984
Eco88I CYCGRG 1 cut(s) 551
Esp3I CGTCTC 1 cut(s) 781
FaeI CATG 2 cut(s) 515, 734
FaiI YATR 9 cut(s) 27, 513, 701, 732, 743, 779, 977, 1080, 1147
FalI AAGNNNNNCTT 4 cut(s) 840, 872, 861, 893
FatI CATG 2 cut(s) 511, 730
FauI CCCGC 1 cut(s) 998
Fnu4HI GCNGC 4 cut(s) 252, 540, 726, 1083
FokI GGATG 5 cut(s) 214, 293, 373, 764, 1073
Fsp4HI GCNGC 4 cut(s) 252, 540, 726, 1083
FspBI CTAG 3 cut(s) 108, 536, 561
GluI GCNGC 4 cut(s) 252, 540, 726, 1083
GsuI CTGGAG 2 cut(s) 622, 1064
HapII CCGG 2 cut(s) 90, 144
HgaI GACGC 1 cut(s) 284
Hin1II CATG 2 cut(s) 515, 734
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 1133
HinfI GANTC 5 cut(s) 140, 183, 824, 998, 1049
HpaI GTTAAC 1 cut(s) 82
HpaII CCGG 2 cut(s) 90, 144
HphI GGTGA 5 cut(s) 55, 163, 401, 824, 1118
Hpy166II GTNNAC 2 cut(s) 82, 634
Hpy188I TCNGA 3 cut(s) 23, 158, 229
Hpy188III TCNNGA 9 cut(s) 398, 477, 512, 553, 584, 596, 710, 749, 920
Hpy8I GTNNAC 2 cut(s) 82, 634
Hpy99I CGWCG 2 cut(s) 10, 343
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4V TGCA 6 cut(s) 263, 358, 421, 458, 725, 1085
HpyF10VI GCNNNNNNNGC 6 cut(s) 260, 334, 662, 671, 680, 944
HpyF3I CTNAG 5 cut(s) 72, 485, 805, 822, 984
Hsp92II CATG 2 cut(s) 515, 734
KspAI GTTAAC 1 cut(s) 82
LmnI GCTCC 3 cut(s) 313, 605, 768
Lsp1109I GCAGC 4 cut(s) 263, 526, 737, 1069
LweI GCATC 2 cut(s) 250, 345
MaeI CTAG 3 cut(s) 108, 536, 561
MaeIII GTNAC 4 cut(s) 204, 221, 285, 407
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 552
MluCI AATT 4 cut(s) 128, 299, 382, 782
MlyI GAGTC 2 cut(s) 833, 1007
MmeI TCCRAC 1 cut(s) 990
MnlI CCTC 4 cut(s) 446, 473, 993, 1039
MseI TTAA 5 cut(s) 81, 308, 507, 611, 969
MspA1I CMGCKG 1 cut(s) 1042
MspI CCGG 2 cut(s) 90, 144
MspR9I CCNGG 1 cut(s) 91
Mva1269I GAATGC 2 cut(s) 349, 1098
MwoI GCNNNNNNNGC 6 cut(s) 260, 334, 662, 671, 680, 944
NciI CCSGG 1 cut(s) 91
NheI GCTAGC 1 cut(s) 560
NlaIII CATG 2 cut(s) 515, 734
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 2 cut(s) 221, 407
PagI TCATGA 1 cut(s) 511
PcsI WCGNNNNNNNCGW 1 cut(s) 233
PctI GAATGC 2 cut(s) 349, 1098
PfeI GAWTC 3 cut(s) 140, 183, 1049
PkrI GCNGC 4 cut(s) 253, 541, 727, 1084
Ple19I CGATCG 1 cut(s) 69
PleI GAGTC 2 cut(s) 832, 1006
PpsI GAGTC 2 cut(s) 832, 1006
PspN4I GGNNCC 1 cut(s) 231
PstI CTGCAG 1 cut(s) 1087
PsuI RGATCY 1 cut(s) 229
PvuI CGATCG 1 cut(s) 69
PvuII CAGCTG 1 cut(s) 1042
SaqAI TTAA 5 cut(s) 81, 308, 507, 611, 969
SatI GCNGC 4 cut(s) 252, 540, 726, 1083
SchI GAGTC 2 cut(s) 833, 1007
ScrFI CCNGG 1 cut(s) 91
SduI GDGCHC 1 cut(s) 552
SfaNI GCATC 2 cut(s) 250, 345
SfcI CTRYAG 3 cut(s) 833, 1037, 1083
Sse9I AATT 4 cut(s) 128, 299, 382, 782
SsiI CCGC 3 cut(s) 1005, 1058, 1126
SspMI CTAG 3 cut(s) 108, 536, 561
StyD4I CCNGG 1 cut(s) 89
TaaI ACNGT 1 cut(s) 413
TaqI TCGA 4 cut(s) 65, 174, 341, 897
TasI AATT 4 cut(s) 128, 299, 382, 782
TfiI GAWTC 3 cut(s) 140, 183, 1049
Tru1I TTAA 5 cut(s) 81, 308, 507, 611, 969
Tru9I TTAA 5 cut(s) 81, 308, 507, 611, 969
TscAI CASTG 1 cut(s) 215
TseFI GTSAC 2 cut(s) 221, 407
TseI GCWGC 4 cut(s) 251, 539, 725, 1082
Tsp45I GTSAC 2 cut(s) 221, 407
TspDTI ATGAA 7 cut(s) 135, 375, 773, 794, 867, 1046, 1077
TspGWI ACGGA 1 cut(s) 805
TspRI CASTG 1 cut(s) 215
XspI CTAG 3 cut(s) 108, 536, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.