nucleotide exchange factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G51980 |
| fragaria_vesca | FvH4_4g21990 FvH4_4g21990 |
| malus_domestica | MD13G1135300.v1.1 |
| prunus_persica | Prupe.1G210000_v2.0.a1 Prupe.1G210000_v2.0.a1 Prupe.1G210000_v2.0.a1 Prupe.1G210000_v2.0.a1 Prupe.1G210000_v2.0.a1 Prupe.1G210000_v2.0.a1 |
| pyrus_communis | pycom13g11810 |
| rosa_chinensis | RchiOBHm_Chr4g0428181 |
| rosa_laevigata | RLG00000007172 |
| rosa_multiflora | Rmu_sc0004940.1_g000006 Rmu_sc0009599.1_g000006 |
| rosa_roxburghii | Rroxscaffold_5G00369910 |
| rosa_rugosa | Rorug04G0223300 |
| rosa_samantha | Rh4AG280600 Rh4BG286100 Rh4CG301400 Rh4DG283100 |
| rosa_wichuraiana | Rw4G024370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1215 |
| Acc16I | TGCGCA | 1 cut(s) | 357 |
| Acc36I | ACCTGC | 2 cut(s) | 358, 589 |
| AccB1I | GGYRCC | 1 cut(s) | 417 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1172 |
| AccII | CGCG | 4 cut(s) | 9, 265, 423, 425 |
| AccIII | TCCGGA | 1 cut(s) | 1110 |
| AciI | CCGC | 7 cut(s) | 50, 162, 189, 421, 921, 1048, 1158 |
| AclWI | GGATC | 3 cut(s) | 233, 1177, 1260 |
| AcoI | YGGCCR | 1 cut(s) | 715 |
| AcuI | CTGAAG | 4 cut(s) | 359, 678, 740, 1008 |
| AcyI | GRCGYC | 3 cut(s) | 180, 344, 1212 |
| AfaI | GTAC | 1 cut(s) | 1220 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 427, 1172 |
| AgsI | TTSAA | 4 cut(s) | 248, 253, 478, 895 |
| AjnI | CCWGG | 1 cut(s) | 174 |
| Alw21I | GWGCWC | 1 cut(s) | 1080 |
| Alw26I | GTCTC | 3 cut(s) | 288, 408, 1203 |
| AlwI | GGATC | 3 cut(s) | 233, 1177, 1260 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 604, 1051 |
| Ama87I | CYCGRG | 2 cut(s) | 147, 507 |
| Aor13HI | TCCGGA | 1 cut(s) | 1110 |
| AoxI | GGCC | 5 cut(s) | 222, 229, 567, 690, 715 |
| ApeKI | GCWGC | 5 cut(s) | 322, 548, 1045, 1051, 1123 |
| AspLEI | GCGC | 6 cut(s) | 9, 265, 358, 425, 427, 949 |
| AspS9I | GGNCC | 2 cut(s) | 96, 222 |
| AsuHPI | GGTGA | 6 cut(s) | 43, 49, 64, 652, 833, 1181 |
| AvaI | CYCGRG | 2 cut(s) | 147, 507 |
| AvaII | GGWCC | 1 cut(s) | 96 |
| BaeGI | GKGCMC | 1 cut(s) | 619 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1210, 1243 |
| BalI | TGGCCA | 1 cut(s) | 717 |
| BanI | GGYRCC | 1 cut(s) | 417 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 198, 230 |
| BbsI | GAAGAC | 1 cut(s) | 347 |
| Bbv12I | GWGCWC | 1 cut(s) | 1080 |
| BbvI | GCAGC | 5 cut(s) | 334, 535, 1038, 1057, 1135 |
| BccI | CCATC | 5 cut(s) | 28, 631, 1016, 1087, 1166 |
| BceAI | ACGGC | 4 cut(s) | 149, 202, 276, 331 |
| BciT130I | CCWGG | 1 cut(s) | 176 |
| BclI | TGATCA | 2 cut(s) | 517, 1245 |
| BcoDI | GTCTC | 3 cut(s) | 288, 408, 1203 |
| BfmI | CTRYAG | 2 cut(s) | 102, 1052 |
| BfoI | RGCGCY | 1 cut(s) | 950 |
| BfuAI | ACCTGC | 2 cut(s) | 358, 589 |
| BisI | GCNGC | 6 cut(s) | 323, 549, 1046, 1049, 1052, 1124 |
| BlsI | GCNGC | 6 cut(s) | 324, 550, 1047, 1050, 1053, 1125 |
| Bme1390I | CCNGG | 1 cut(s) | 176 |
| Bme18I | GGWCC | 1 cut(s) | 96 |
| BmeT110I | CYCGRG | 2 cut(s) | 147, 507 |
| BmgT120I | GGNCC | 2 cut(s) | 96, 222 |
| BmiI | GGNNCC | 3 cut(s) | 419, 453, 1163 |
| BmrFI | CCNGG | 1 cut(s) | 176 |
| BmsI | GCATC | 4 cut(s) | 343, 354, 517, 1227 |
| BpiI | GAAGAC | 1 cut(s) | 347 |
| BpmI | CTGGAG | 1 cut(s) | 449 |
| Bpu10I | CCTNAGC | 1 cut(s) | 296 |
| BpuEI | CTTGAG | 3 cut(s) | 406, 506, 962 |
| BsaHI | GRCGYC | 3 cut(s) | 180, 344, 1212 |
| BsaWI | WCCGGW | 1 cut(s) | 1110 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 427, 1172 |
| Bse1I | ACTGG | 1 cut(s) | 570 |
| BseAI | TCCGGA | 1 cut(s) | 1110 |
| BseBI | CCWGG | 1 cut(s) | 176 |
| BseGI | GGATG | 5 cut(s) | 27, 865, 917, 1027, 1102 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 427, 1172 |
| BseMII | CTCAG | 5 cut(s) | 137, 143, 149, 287, 822 |
| BseNI | ACTGG | 1 cut(s) | 570 |
| BsePI | GCGCGC | 1 cut(s) | 423 |
| BseRI | GAGGAG | 3 cut(s) | 125, 187, 446 |
| BseSI | GKGCMC | 1 cut(s) | 619 |
| BseXI | GCAGC | 5 cut(s) | 334, 535, 1038, 1057, 1135 |
| BseYI | CCCAGC | 1 cut(s) | 740 |
| BsgI | GTGCAG | 1 cut(s) | 1142 |
| Bsh1236I | CGCG | 4 cut(s) | 9, 265, 423, 425 |
| BshFI | GGCC | 5 cut(s) | 224, 231, 569, 692, 717 |
| BshNI | GGYRCC | 1 cut(s) | 417 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1080 |
| BsiHKCI | CYCGRG | 2 cut(s) | 147, 507 |
| BsiSI | CCGG | 1 cut(s) | 1111 |
| BslFI | GGGAC | 1 cut(s) | 164 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 427, 1172 |
| BsmAI | GTCTC | 3 cut(s) | 288, 408, 1203 |
| BsmBI | CGTCTC | 1 cut(s) | 1203 |
| BsmFI | GGGAC | 1 cut(s) | 164 |
| BsnI | GGCC | 5 cut(s) | 224, 231, 569, 692, 717 |
| BsoBI | CYCGRG | 2 cut(s) | 147, 507 |
| Bsp1286I | GDGCHC | 2 cut(s) | 619, 1080 |
| Bsp13I | TCCGGA | 1 cut(s) | 1110 |
| Bsp143I | GATC | 9 cut(s) | 238, 412, 517, 823, 907, 931, 1182, 1245, 1252 |
| BspACI | CCGC | 7 cut(s) | 50, 162, 189, 421, 921, 1048, 1158 |
| BspANI | GGCC | 5 cut(s) | 224, 231, 569, 692, 717 |
| BspCNI | CTCAG | 5 cut(s) | 136, 142, 148, 288, 823 |
| BspEI | TCCGGA | 1 cut(s) | 1110 |
| BspFNI | CGCG | 4 cut(s) | 9, 265, 423, 425 |
| BspLI | GGNNCC | 3 cut(s) | 419, 453, 1163 |
| BspMAI | CTGCAG | 2 cut(s) | 106, 1056 |
| BspMI | ACCTGC | 2 cut(s) | 358, 589 |
| BspPI | GGATC | 3 cut(s) | 233, 1177, 1260 |
| BspQI | GCTCTTC | 1 cut(s) | 1068 |
| BspT107I | GGYRCC | 1 cut(s) | 417 |
| BsrI | ACTGG | 1 cut(s) | 570 |
| BssHII | GCGCGC | 1 cut(s) | 423 |
| BssMI | GATC | 9 cut(s) | 238, 412, 517, 823, 907, 931, 1182, 1245, 1252 |
| BssNI | GRCGYC | 3 cut(s) | 180, 344, 1212 |
| Bst2UI | CCWGG | 1 cut(s) | 176 |
| Bst4CI | ACNGT | 3 cut(s) | 219, 305, 621 |
| Bst6I | CTCTTC | 2 cut(s) | 102, 1068 |
| BstACI | GRCGYC | 3 cut(s) | 180, 344, 1212 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 364, 1051 |
| BstC8I | GCNNGC | 2 cut(s) | 425, 715 |
| BstDEI | CTNAG | 6 cut(s) | 123, 129, 135, 141, 296, 831 |
| BstF5I | GGATG | 5 cut(s) | 27, 865, 917, 1027, 1102 |
| BstFNI | CGCG | 4 cut(s) | 9, 265, 423, 425 |
| BstH2I | RGCGCY | 1 cut(s) | 950 |
| BstHHI | GCGC | 6 cut(s) | 9, 265, 358, 425, 427, 949 |
| BstKTI | GATC | 9 cut(s) | 241, 415, 520, 826, 910, 934, 1185, 1248, 1255 |
| BstMAI | GTCTC | 3 cut(s) | 288, 408, 1203 |
| BstMBI | GATC | 9 cut(s) | 238, 412, 517, 823, 907, 931, 1182, 1245, 1252 |
| BstNI | CCWGG | 1 cut(s) | 176 |
| BstSCI | CCNGG | 1 cut(s) | 174 |
| BstSFI | CTRYAG | 2 cut(s) | 102, 1052 |
| BstSLI | GKGCMC | 1 cut(s) | 619 |
| BstUI | CGCG | 4 cut(s) | 9, 265, 423, 425 |
| BstV1I | GCAGC | 5 cut(s) | 334, 535, 1038, 1057, 1135 |
| BstV2I | GAAGAC | 1 cut(s) | 347 |
| BstX2I | RGATCY | 1 cut(s) | 1252 |
| BstYI | RGATCY | 1 cut(s) | 1252 |
| BsuRI | GGCC | 5 cut(s) | 224, 231, 569, 692, 717 |
| BtsCI | GGATG | 5 cut(s) | 27, 865, 917, 1027, 1102 |
| BtsI | GCAGTG | 1 cut(s) | 99 |
| BtsIMutI | CAGTG | 3 cut(s) | 99, 224, 617 |
| BveI | ACCTGC | 2 cut(s) | 358, 589 |
| Cac8I | GCNNGC | 2 cut(s) | 425, 715 |
| CaiI | CAGNNNCTG | 2 cut(s) | 604, 1051 |
| CfoI | GCGC | 6 cut(s) | 9, 265, 358, 425, 427, 949 |
| Cfr13I | GGNCC | 2 cut(s) | 96, 222 |
| CseI | GACGC | 2 cut(s) | 188, 352 |
| Csp6I | GTAC | 1 cut(s) | 1219 |
| CviAII | CATG | 6 cut(s) | 18, 328, 552, 1154, 1224, 1249 |
| CviQI | GTAC | 1 cut(s) | 1219 |
| DdeI | CTNAG | 6 cut(s) | 123, 129, 135, 141, 296, 831 |
| DpnI | GATC | 9 cut(s) | 240, 414, 519, 825, 909, 933, 1184, 1247, 1254 |
| DpnII | GATC | 9 cut(s) | 238, 412, 517, 823, 907, 931, 1182, 1245, 1252 |
| EaeI | YGGCCR | 1 cut(s) | 715 |
| Eam1104I | CTCTTC | 2 cut(s) | 102, 1068 |
| EarI | CTCTTC | 2 cut(s) | 102, 1068 |
| EciI | GGCGGA | 1 cut(s) | 204 |
| Eco32I | GATATC | 1 cut(s) | 787 |
| Eco47I | GGWCC | 1 cut(s) | 96 |
| Eco57I | CTGAAG | 4 cut(s) | 359, 678, 740, 1008 |
| Eco88I | CYCGRG | 2 cut(s) | 147, 507 |
| EcoRII | CCWGG | 1 cut(s) | 174 |
| EcoRV | GATATC | 1 cut(s) | 787 |
| Esp3I | CGTCTC | 1 cut(s) | 1203 |
| FaeI | CATG | 6 cut(s) | 21, 331, 555, 1157, 1227, 1252 |
| FaqI | GGGAC | 1 cut(s) | 164 |
| FatI | CATG | 6 cut(s) | 17, 327, 551, 1153, 1223, 1248 |
| FauI | CCCGC | 1 cut(s) | 1151 |
| FauNDI | CATATG | 1 cut(s) | 1168 |
| FbaI | TGATCA | 2 cut(s) | 517, 1245 |
| Fnu4HI | GCNGC | 6 cut(s) | 323, 549, 1046, 1049, 1052, 1124 |
| FokI | GGATG | 5 cut(s) | 34, 872, 904, 1034, 1109 |
| Fsp4HI | GCNGC | 6 cut(s) | 323, 549, 1046, 1049, 1052, 1124 |
| FspI | TGCGCA | 1 cut(s) | 357 |
| GlaI | GCGC | 6 cut(s) | 8, 264, 357, 424, 426, 948 |
| GluI | GCNGC | 6 cut(s) | 323, 549, 1046, 1049, 1052, 1124 |
| GsaI | CCCAGC | 1 cut(s) | 744 |
| GsuI | CTGGAG | 1 cut(s) | 449 |
| HaeII | RGCGCY | 1 cut(s) | 950 |
| HaeIII | GGCC | 5 cut(s) | 224, 231, 569, 692, 717 |
| HapII | CCGG | 1 cut(s) | 1111 |
| HgaI | GACGC | 2 cut(s) | 188, 352 |
| HhaI | GCGC | 6 cut(s) | 9, 265, 358, 425, 427, 949 |
| Hin1I | GRCGYC | 3 cut(s) | 180, 344, 1212 |
| Hin1II | CATG | 6 cut(s) | 21, 331, 555, 1157, 1227, 1252 |
| Hin6I | GCGC | 6 cut(s) | 7, 263, 356, 423, 425, 947 |
| HinP1I | GCGC | 6 cut(s) | 7, 263, 356, 423, 425, 947 |
| HinfI | GANTC | 5 cut(s) | 127, 133, 192, 773, 1107 |
| HpaII | CCGG | 1 cut(s) | 1111 |
| HphI | GGTGA | 6 cut(s) | 43, 49, 64, 652, 833, 1181 |
| Hpy166II | GTNNAC | 2 cut(s) | 13, 99 |
| Hpy188III | TCNNGA | 9 cut(s) | 81, 149, 313, 407, 509, 605, 892, 979, 1111 |
| Hpy8I | GTNNAC | 2 cut(s) | 13, 99 |
| Hpy99I | CGWCG | 2 cut(s) | 158, 188 |
| HpyAV | CCTTC | 7 cut(s) | 200, 559, 764, 824, 850, 937, 1196 |
| HpyCH4III | ACNGT | 3 cut(s) | 219, 305, 621 |
| HpyCH4IV | ACGT | 1 cut(s) | 1212 |
| HpyF3I | CTNAG | 6 cut(s) | 123, 129, 135, 141, 296, 831 |
| HpySE526I | ACGT | 1 cut(s) | 1212 |
| Hsp92I | GRCGYC | 3 cut(s) | 180, 344, 1212 |
| Hsp92II | CATG | 6 cut(s) | 21, 331, 555, 1157, 1227, 1252 |
| HspAI | GCGC | 6 cut(s) | 7, 263, 356, 423, 425, 947 |
| Kpn2I | TCCGGA | 1 cut(s) | 1110 |
| Ksp22I | TGATCA | 2 cut(s) | 517, 1245 |
| Kzo9I | GATC | 9 cut(s) | 238, 412, 517, 823, 907, 931, 1182, 1245, 1252 |
| LguI | GCTCTTC | 1 cut(s) | 1068 |
| LmnI | GCTCC | 3 cut(s) | 4, 433, 451 |
| Lsp1109I | GCAGC | 5 cut(s) | 334, 535, 1038, 1057, 1135 |
| LweI | GCATC | 4 cut(s) | 343, 354, 517, 1227 |
| MaeII | ACGT | 1 cut(s) | 1212 |
| MaeIII | GTNAC | 3 cut(s) | 166, 213, 502 |
| MalI | GATC | 9 cut(s) | 240, 414, 519, 825, 909, 933, 1184, 1247, 1254 |
| MboI | GATC | 9 cut(s) | 238, 412, 517, 823, 907, 931, 1182, 1245, 1252 |
| MboII | GAAGA | 7 cut(s) | 119, 352, 422, 646, 671, 959, 1085 |
| MfeI | CAATTG | 4 cut(s) | 248, 456, 585, 839 |
| MflI | RGATCY | 1 cut(s) | 1252 |
| MhlI | GDGCHC | 2 cut(s) | 619, 1080 |
| MlsI | TGGCCA | 1 cut(s) | 717 |
| MluCI | AATT | 6 cut(s) | 248, 278, 391, 456, 585, 839 |
| MluNI | TGGCCA | 1 cut(s) | 717 |
| MlyI | GAGTC | 3 cut(s) | 121, 127, 1101 |
| MmeI | TCCRAC | 1 cut(s) | 999 |
| Mox20I | TGGCCA | 1 cut(s) | 717 |
| MroI | TCCGGA | 1 cut(s) | 1110 |
| MscI | TGGCCA | 1 cut(s) | 717 |
| MseI | TTAA | 6 cut(s) | 72, 629, 695, 960, 1002, 1061 |
| MslI | CAYNNNNRTG | 2 cut(s) | 525, 1274 |
| Msp20I | TGGCCA | 1 cut(s) | 717 |
| MspA1I | CMGCKG | 2 cut(s) | 923, 1048 |
| MspI | CCGG | 1 cut(s) | 1111 |
| MspR9I | CCNGG | 1 cut(s) | 176 |
| MunI | CAATTG | 4 cut(s) | 248, 456, 585, 839 |
| MvaI | CCWGG | 1 cut(s) | 176 |
| MvnI | CGCG | 4 cut(s) | 9, 265, 423, 425 |
| NdeI | CATATG | 1 cut(s) | 1168 |
| NdeII | GATC | 9 cut(s) | 238, 412, 517, 823, 907, 931, 1182, 1245, 1252 |
| NlaIII | CATG | 6 cut(s) | 21, 331, 555, 1157, 1227, 1252 |
| NlaIV | GGNNCC | 3 cut(s) | 419, 453, 1163 |
| NsbI | TGCGCA | 1 cut(s) | 357 |
| PaeR7I | CTCGAG | 1 cut(s) | 507 |
| PauI | GCGCGC | 1 cut(s) | 423 |
| PciSI | GCTCTTC | 1 cut(s) | 1068 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 162 |
| PfeI | GAWTC | 2 cut(s) | 192, 773 |
| PflFI | GACNNNGTC | 1 cut(s) | 346 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1172 |
| PkrI | GCNGC | 6 cut(s) | 324, 550, 1047, 1050, 1053, 1125 |
| PleI | GAGTC | 3 cut(s) | 121, 127, 1101 |
| PpsI | GAGTC | 3 cut(s) | 121, 127, 1101 |
| Psp6I | CCWGG | 1 cut(s) | 174 |
| PspFI | CCCAGC | 1 cut(s) | 740 |
| PspGI | CCWGG | 1 cut(s) | 174 |
| PspN4I | GGNNCC | 3 cut(s) | 419, 453, 1163 |
| PspPI | GGNCC | 2 cut(s) | 96, 222 |
| PstI | CTGCAG | 2 cut(s) | 106, 1056 |
| PstNI | CAGNNNCTG | 2 cut(s) | 604, 1051 |
| PsuI | RGATCY | 1 cut(s) | 1252 |
| PsyI | GACNNNGTC | 1 cut(s) | 346 |
| PteI | GCGCGC | 1 cut(s) | 423 |
| RsaI | GTAC | 1 cut(s) | 1220 |
| RsaNI | GTAC | 1 cut(s) | 1219 |
| RseI | CAYNNNNRTG | 2 cut(s) | 525, 1274 |
| SapI | GCTCTTC | 1 cut(s) | 1068 |
| SaqAI | TTAA | 6 cut(s) | 72, 629, 695, 960, 1002, 1061 |
| SatI | GCNGC | 6 cut(s) | 323, 549, 1046, 1049, 1052, 1124 |
| Sau3AI | GATC | 9 cut(s) | 238, 412, 517, 823, 907, 931, 1182, 1245, 1252 |
| Sau96I | GGNCC | 2 cut(s) | 96, 222 |
| SchI | GAGTC | 3 cut(s) | 121, 127, 1101 |
| ScrFI | CCNGG | 1 cut(s) | 176 |
| SduI | GDGCHC | 2 cut(s) | 619, 1080 |
| SfaNI | GCATC | 4 cut(s) | 343, 354, 517, 1227 |
| SfcI | CTRYAG | 2 cut(s) | 102, 1052 |
| Sfr274I | CTCGAG | 1 cut(s) | 507 |
| SinI | GGWCC | 1 cut(s) | 96 |
| SlaI | CTCGAG | 1 cut(s) | 507 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 525, 1274 |
| SmlI | CTYRAG | 4 cut(s) | 385, 485, 507, 977 |
| SmoI | CTYRAG | 4 cut(s) | 385, 485, 507, 977 |
| Sse9I | AATT | 6 cut(s) | 248, 278, 391, 456, 585, 839 |
| SsiI | CCGC | 7 cut(s) | 50, 162, 189, 421, 921, 1048, 1158 |
| SspI | AATATT | 1 cut(s) | 70 |
| StyD4I | CCNGG | 1 cut(s) | 174 |
| TaaI | ACNGT | 3 cut(s) | 219, 305, 621 |
| TaiI | ACGT | 1 cut(s) | 1215 |
| TaqI | TCGA | 4 cut(s) | 204, 312, 508, 1265 |
| TasI | AATT | 6 cut(s) | 248, 278, 391, 456, 585, 839 |
| TauI | GCSGC | 1 cut(s) | 1051 |
| TfiI | GAWTC | 2 cut(s) | 192, 773 |
| Tru1I | TTAA | 6 cut(s) | 72, 629, 695, 960, 1002, 1061 |
| Tru9I | TTAA | 6 cut(s) | 72, 629, 695, 960, 1002, 1061 |
| TscAI | CASTG | 3 cut(s) | 106, 224, 624 |
| TseI | GCWGC | 5 cut(s) | 322, 548, 1045, 1051, 1123 |
| TspDTI | ATGAA | 1 cut(s) | 647 |
| TspRI | CASTG | 3 cut(s) | 106, 224, 624 |
| Tth111I | GACNNNGTC | 1 cut(s) | 346 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1172 |
| VpaK11BI | GGWCC | 1 cut(s) | 96 |
| XhoI | CTCGAG | 1 cut(s) | 507 |
| ZraI | GACGTC | 1 cut(s) | 1213 |