Prupe.1G210000_v2.0.a1

nucleotide exchange factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
22370599 .. 22372683
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G210000.3

Sequence Viewer

Length: 1281 bp
ATGGAGCGCGTGAACTCATGGATGTTAGTGGTGATGGTGATTTTTATGGCGGTGAGGGCAGAGCGAAATATTAACAGGTCGGGAGGGGTATATTGGTCCACTGCAGAAGAGGAGGCTCTGGCTCAGACTCAGACTCAGACTAAGGCTCGGGACGACGACACCGCCGTTACCGACCTGGACGCCGACGGCGGATTCTCCTCGCTCGAAGGAATGTTACAGTGGGCCATAGGCCACTCCGATCCCGTTCAATTGAAAGAAACGGCGCGAGATGTTGAGAAATTGTCTCCTACCGACCTGAGCAACCGTCAGGTCGAGATAAAGCAGCTCATGGACGAGCTGAAGACGCCGTCTGATGCGCAGTTGATGCAGGTTGCGATAAATGACTTGAGCAATTCGTCTTTGTCTCTGGAAGATCGGCACCGCGCGCTGGAGGAGCTTCTGATACTTGTGGAGCCAATTGATAATGCAAATGATTTGAACAAACTTGAGGGGCTTGTTGTGGTTACTCGAGAGCTTGATCATTCTGATGCAGATACAAGGAAAATGGCTGCATGGGTGCTTGGGAAGGCCAGTCAAAATAACCCAATTGTTCAGAAGCAGGTTCTGGAACTTGGGGCACTGTCCAAGTTAATGAAGATGGTGAAATCTGACTTTGCTGAAGAAGCCACAAAAGCGTTGTATGCTGTTTCGGCCTTAATCCGAAACAATGTAGCTGGCCAAGAGTTGTTCTATGAGGAAGCTGGGCATTTACTCCTTCAGAACATTATGAGTGAATCAAGCATTGATATCAGACTTCGTAGAAAAGCTGTGTTCCTTCTGGGTGATCTTGCTGAGTGTCAATTGGAAAATAGGGAGAAGGATGAGCTACCCTTTTTCAGTAGTCGCATTTTCTTGAAGTCTGTGGTTGATCTGACATCATCCGCTGACCTTGATCTGCAAGAGAAGGCGCTTGTTGCACTTAAAAATCTTCTGCAACTCAAGACAACTGAAGCTCTGGTTTTTAAGGACTTTTGTGGGTTGGATGGTGCATTGGAGAGATTGAGGCAGCGGCTGCAGGATTTAATGGTAGAGGAAGAGCACAGGGATTATGTGATGGATGTGGAAAGACTCCGGAGTGAAGTGCAGCAGATTTTTGATAGAAAGCTGGAAAAGCATGGCGGGTTCCCATATGATGGGAATGTGATCCTTCACCAACATTACTTACTTGGAGACGTCTGGTACTCATGTGTTTATGTGATGCTTTTGATCATGGATCTGTATATATCGAACATTTTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

427

Amino Acids

48.32

Weight (kDa)

4.79

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1215
Acc16I TGCGCA 1 cut(s) 357
Acc36I ACCTGC 2 cut(s) 358, 589
AccB1I GGYRCC 1 cut(s) 417
AccB7I CCANNNNNTGG 1 cut(s) 1172
AccII CGCG 4 cut(s) 9, 265, 423, 425
AccIII TCCGGA 1 cut(s) 1110
AciI CCGC 7 cut(s) 50, 162, 189, 421, 921, 1048, 1158
AclWI GGATC 3 cut(s) 233, 1177, 1260
AcoI YGGCCR 1 cut(s) 715
AcuI CTGAAG 4 cut(s) 359, 678, 740, 1008
AcyI GRCGYC 3 cut(s) 180, 344, 1212
AfaI GTAC 1 cut(s) 1220
AfiI CCNNNNNNNGG 2 cut(s) 427, 1172
AgsI TTSAA 4 cut(s) 248, 253, 478, 895
AjnI CCWGG 1 cut(s) 174
Alw21I GWGCWC 1 cut(s) 1080
Alw26I GTCTC 3 cut(s) 288, 408, 1203
AlwI GGATC 3 cut(s) 233, 1177, 1260
AlwNI CAGNNNCTG 2 cut(s) 604, 1051
Ama87I CYCGRG 2 cut(s) 147, 507
Aor13HI TCCGGA 1 cut(s) 1110
AoxI GGCC 5 cut(s) 222, 229, 567, 690, 715
ApeKI GCWGC 5 cut(s) 322, 548, 1045, 1051, 1123
AspLEI GCGC 6 cut(s) 9, 265, 358, 425, 427, 949
AspS9I GGNCC 2 cut(s) 96, 222
AsuHPI GGTGA 6 cut(s) 43, 49, 64, 652, 833, 1181
AvaI CYCGRG 2 cut(s) 147, 507
AvaII GGWCC 1 cut(s) 96
BaeGI GKGCMC 1 cut(s) 619
BaeI ACNNNNGTAYC 2 cut(s) 1210, 1243
BalI TGGCCA 1 cut(s) 717
BanI GGYRCC 1 cut(s) 417
BarI GAAGNNNNNNTAC 2 cut(s) 198, 230
BbsI GAAGAC 1 cut(s) 347
Bbv12I GWGCWC 1 cut(s) 1080
BbvI GCAGC 5 cut(s) 334, 535, 1038, 1057, 1135
BccI CCATC 5 cut(s) 28, 631, 1016, 1087, 1166
BceAI ACGGC 4 cut(s) 149, 202, 276, 331
BciT130I CCWGG 1 cut(s) 176
BclI TGATCA 2 cut(s) 517, 1245
BcoDI GTCTC 3 cut(s) 288, 408, 1203
BfmI CTRYAG 2 cut(s) 102, 1052
BfoI RGCGCY 1 cut(s) 950
BfuAI ACCTGC 2 cut(s) 358, 589
BisI GCNGC 6 cut(s) 323, 549, 1046, 1049, 1052, 1124
BlsI GCNGC 6 cut(s) 324, 550, 1047, 1050, 1053, 1125
Bme1390I CCNGG 1 cut(s) 176
Bme18I GGWCC 1 cut(s) 96
BmeT110I CYCGRG 2 cut(s) 147, 507
BmgT120I GGNCC 2 cut(s) 96, 222
BmiI GGNNCC 3 cut(s) 419, 453, 1163
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 4 cut(s) 343, 354, 517, 1227
BpiI GAAGAC 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 449
Bpu10I CCTNAGC 1 cut(s) 296
BpuEI CTTGAG 3 cut(s) 406, 506, 962
BsaHI GRCGYC 3 cut(s) 180, 344, 1212
BsaWI WCCGGW 1 cut(s) 1110
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 1172
Bse1I ACTGG 1 cut(s) 570
BseAI TCCGGA 1 cut(s) 1110
BseBI CCWGG 1 cut(s) 176
BseGI GGATG 5 cut(s) 27, 865, 917, 1027, 1102
BseLI CCNNNNNNNGG 2 cut(s) 427, 1172
BseMII CTCAG 5 cut(s) 137, 143, 149, 287, 822
BseNI ACTGG 1 cut(s) 570
BsePI GCGCGC 1 cut(s) 423
BseRI GAGGAG 3 cut(s) 125, 187, 446
BseSI GKGCMC 1 cut(s) 619
BseXI GCAGC 5 cut(s) 334, 535, 1038, 1057, 1135
BseYI CCCAGC 1 cut(s) 740
BsgI GTGCAG 1 cut(s) 1142
Bsh1236I CGCG 4 cut(s) 9, 265, 423, 425
BshFI GGCC 5 cut(s) 224, 231, 569, 692, 717
BshNI GGYRCC 1 cut(s) 417
BsiHKAI GWGCWC 1 cut(s) 1080
BsiHKCI CYCGRG 2 cut(s) 147, 507
BsiSI CCGG 1 cut(s) 1111
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 2 cut(s) 427, 1172
BsmAI GTCTC 3 cut(s) 288, 408, 1203
BsmBI CGTCTC 1 cut(s) 1203
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 5 cut(s) 224, 231, 569, 692, 717
BsoBI CYCGRG 2 cut(s) 147, 507
Bsp1286I GDGCHC 2 cut(s) 619, 1080
Bsp13I TCCGGA 1 cut(s) 1110
Bsp143I GATC 9 cut(s) 238, 412, 517, 823, 907, 931, 1182, 1245, 1252
BspACI CCGC 7 cut(s) 50, 162, 189, 421, 921, 1048, 1158
BspANI GGCC 5 cut(s) 224, 231, 569, 692, 717
BspCNI CTCAG 5 cut(s) 136, 142, 148, 288, 823
BspEI TCCGGA 1 cut(s) 1110
BspFNI CGCG 4 cut(s) 9, 265, 423, 425
BspLI GGNNCC 3 cut(s) 419, 453, 1163
BspMAI CTGCAG 2 cut(s) 106, 1056
BspMI ACCTGC 2 cut(s) 358, 589
BspPI GGATC 3 cut(s) 233, 1177, 1260
BspQI GCTCTTC 1 cut(s) 1068
BspT107I GGYRCC 1 cut(s) 417
BsrI ACTGG 1 cut(s) 570
BssHII GCGCGC 1 cut(s) 423
BssMI GATC 9 cut(s) 238, 412, 517, 823, 907, 931, 1182, 1245, 1252
BssNI GRCGYC 3 cut(s) 180, 344, 1212
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 3 cut(s) 219, 305, 621
Bst6I CTCTTC 2 cut(s) 102, 1068
BstACI GRCGYC 3 cut(s) 180, 344, 1212
BstAPI GCANNNNNTGC 2 cut(s) 364, 1051
BstC8I GCNNGC 2 cut(s) 425, 715
BstDEI CTNAG 6 cut(s) 123, 129, 135, 141, 296, 831
BstF5I GGATG 5 cut(s) 27, 865, 917, 1027, 1102
BstFNI CGCG 4 cut(s) 9, 265, 423, 425
BstH2I RGCGCY 1 cut(s) 950
BstHHI GCGC 6 cut(s) 9, 265, 358, 425, 427, 949
BstKTI GATC 9 cut(s) 241, 415, 520, 826, 910, 934, 1185, 1248, 1255
BstMAI GTCTC 3 cut(s) 288, 408, 1203
BstMBI GATC 9 cut(s) 238, 412, 517, 823, 907, 931, 1182, 1245, 1252
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 2 cut(s) 102, 1052
BstSLI GKGCMC 1 cut(s) 619
BstUI CGCG 4 cut(s) 9, 265, 423, 425
BstV1I GCAGC 5 cut(s) 334, 535, 1038, 1057, 1135
BstV2I GAAGAC 1 cut(s) 347
BstX2I RGATCY 1 cut(s) 1252
BstYI RGATCY 1 cut(s) 1252
BsuRI GGCC 5 cut(s) 224, 231, 569, 692, 717
BtsCI GGATG 5 cut(s) 27, 865, 917, 1027, 1102
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 3 cut(s) 99, 224, 617
BveI ACCTGC 2 cut(s) 358, 589
Cac8I GCNNGC 2 cut(s) 425, 715
CaiI CAGNNNCTG 2 cut(s) 604, 1051
CfoI GCGC 6 cut(s) 9, 265, 358, 425, 427, 949
Cfr13I GGNCC 2 cut(s) 96, 222
CseI GACGC 2 cut(s) 188, 352
Csp6I GTAC 1 cut(s) 1219
CviAII CATG 6 cut(s) 18, 328, 552, 1154, 1224, 1249
CviQI GTAC 1 cut(s) 1219
DdeI CTNAG 6 cut(s) 123, 129, 135, 141, 296, 831
DpnI GATC 9 cut(s) 240, 414, 519, 825, 909, 933, 1184, 1247, 1254
DpnII GATC 9 cut(s) 238, 412, 517, 823, 907, 931, 1182, 1245, 1252
EaeI YGGCCR 1 cut(s) 715
Eam1104I CTCTTC 2 cut(s) 102, 1068
EarI CTCTTC 2 cut(s) 102, 1068
EciI GGCGGA 1 cut(s) 204
Eco32I GATATC 1 cut(s) 787
Eco47I GGWCC 1 cut(s) 96
Eco57I CTGAAG 4 cut(s) 359, 678, 740, 1008
Eco88I CYCGRG 2 cut(s) 147, 507
EcoRII CCWGG 1 cut(s) 174
EcoRV GATATC 1 cut(s) 787
Esp3I CGTCTC 1 cut(s) 1203
FaeI CATG 6 cut(s) 21, 331, 555, 1157, 1227, 1252
FaqI GGGAC 1 cut(s) 164
FatI CATG 6 cut(s) 17, 327, 551, 1153, 1223, 1248
FauI CCCGC 1 cut(s) 1151
FauNDI CATATG 1 cut(s) 1168
FbaI TGATCA 2 cut(s) 517, 1245
Fnu4HI GCNGC 6 cut(s) 323, 549, 1046, 1049, 1052, 1124
FokI GGATG 5 cut(s) 34, 872, 904, 1034, 1109
Fsp4HI GCNGC 6 cut(s) 323, 549, 1046, 1049, 1052, 1124
FspI TGCGCA 1 cut(s) 357
GlaI GCGC 6 cut(s) 8, 264, 357, 424, 426, 948
GluI GCNGC 6 cut(s) 323, 549, 1046, 1049, 1052, 1124
GsaI CCCAGC 1 cut(s) 744
GsuI CTGGAG 1 cut(s) 449
HaeII RGCGCY 1 cut(s) 950
HaeIII GGCC 5 cut(s) 224, 231, 569, 692, 717
HapII CCGG 1 cut(s) 1111
HgaI GACGC 2 cut(s) 188, 352
HhaI GCGC 6 cut(s) 9, 265, 358, 425, 427, 949
Hin1I GRCGYC 3 cut(s) 180, 344, 1212
Hin1II CATG 6 cut(s) 21, 331, 555, 1157, 1227, 1252
Hin6I GCGC 6 cut(s) 7, 263, 356, 423, 425, 947
HinP1I GCGC 6 cut(s) 7, 263, 356, 423, 425, 947
HinfI GANTC 5 cut(s) 127, 133, 192, 773, 1107
HpaII CCGG 1 cut(s) 1111
HphI GGTGA 6 cut(s) 43, 49, 64, 652, 833, 1181
Hpy166II GTNNAC 2 cut(s) 13, 99
Hpy188III TCNNGA 9 cut(s) 81, 149, 313, 407, 509, 605, 892, 979, 1111
Hpy8I GTNNAC 2 cut(s) 13, 99
Hpy99I CGWCG 2 cut(s) 158, 188
HpyAV CCTTC 7 cut(s) 200, 559, 764, 824, 850, 937, 1196
HpyCH4III ACNGT 3 cut(s) 219, 305, 621
HpyCH4IV ACGT 1 cut(s) 1212
HpyF3I CTNAG 6 cut(s) 123, 129, 135, 141, 296, 831
HpySE526I ACGT 1 cut(s) 1212
Hsp92I GRCGYC 3 cut(s) 180, 344, 1212
Hsp92II CATG 6 cut(s) 21, 331, 555, 1157, 1227, 1252
HspAI GCGC 6 cut(s) 7, 263, 356, 423, 425, 947
Kpn2I TCCGGA 1 cut(s) 1110
Ksp22I TGATCA 2 cut(s) 517, 1245
Kzo9I GATC 9 cut(s) 238, 412, 517, 823, 907, 931, 1182, 1245, 1252
LguI GCTCTTC 1 cut(s) 1068
LmnI GCTCC 3 cut(s) 4, 433, 451
Lsp1109I GCAGC 5 cut(s) 334, 535, 1038, 1057, 1135
LweI GCATC 4 cut(s) 343, 354, 517, 1227
MaeII ACGT 1 cut(s) 1212
MaeIII GTNAC 3 cut(s) 166, 213, 502
MalI GATC 9 cut(s) 240, 414, 519, 825, 909, 933, 1184, 1247, 1254
MboI GATC 9 cut(s) 238, 412, 517, 823, 907, 931, 1182, 1245, 1252
MboII GAAGA 7 cut(s) 119, 352, 422, 646, 671, 959, 1085
MfeI CAATTG 4 cut(s) 248, 456, 585, 839
MflI RGATCY 1 cut(s) 1252
MhlI GDGCHC 2 cut(s) 619, 1080
MlsI TGGCCA 1 cut(s) 717
MluCI AATT 6 cut(s) 248, 278, 391, 456, 585, 839
MluNI TGGCCA 1 cut(s) 717
MlyI GAGTC 3 cut(s) 121, 127, 1101
MmeI TCCRAC 1 cut(s) 999
Mox20I TGGCCA 1 cut(s) 717
MroI TCCGGA 1 cut(s) 1110
MscI TGGCCA 1 cut(s) 717
MseI TTAA 6 cut(s) 72, 629, 695, 960, 1002, 1061
MslI CAYNNNNRTG 2 cut(s) 525, 1274
Msp20I TGGCCA 1 cut(s) 717
MspA1I CMGCKG 2 cut(s) 923, 1048
MspI CCGG 1 cut(s) 1111
MspR9I CCNGG 1 cut(s) 176
MunI CAATTG 4 cut(s) 248, 456, 585, 839
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 4 cut(s) 9, 265, 423, 425
NdeI CATATG 1 cut(s) 1168
NdeII GATC 9 cut(s) 238, 412, 517, 823, 907, 931, 1182, 1245, 1252
NlaIII CATG 6 cut(s) 21, 331, 555, 1157, 1227, 1252
NlaIV GGNNCC 3 cut(s) 419, 453, 1163
NsbI TGCGCA 1 cut(s) 357
PaeR7I CTCGAG 1 cut(s) 507
PauI GCGCGC 1 cut(s) 423
PciSI GCTCTTC 1 cut(s) 1068
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PfeI GAWTC 2 cut(s) 192, 773
PflFI GACNNNGTC 1 cut(s) 346
PflMI CCANNNNNTGG 1 cut(s) 1172
PkrI GCNGC 6 cut(s) 324, 550, 1047, 1050, 1053, 1125
PleI GAGTC 3 cut(s) 121, 127, 1101
PpsI GAGTC 3 cut(s) 121, 127, 1101
Psp6I CCWGG 1 cut(s) 174
PspFI CCCAGC 1 cut(s) 740
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 3 cut(s) 419, 453, 1163
PspPI GGNCC 2 cut(s) 96, 222
PstI CTGCAG 2 cut(s) 106, 1056
PstNI CAGNNNCTG 2 cut(s) 604, 1051
PsuI RGATCY 1 cut(s) 1252
PsyI GACNNNGTC 1 cut(s) 346
PteI GCGCGC 1 cut(s) 423
RsaI GTAC 1 cut(s) 1220
RsaNI GTAC 1 cut(s) 1219
RseI CAYNNNNRTG 2 cut(s) 525, 1274
SapI GCTCTTC 1 cut(s) 1068
SaqAI TTAA 6 cut(s) 72, 629, 695, 960, 1002, 1061
SatI GCNGC 6 cut(s) 323, 549, 1046, 1049, 1052, 1124
Sau3AI GATC 9 cut(s) 238, 412, 517, 823, 907, 931, 1182, 1245, 1252
Sau96I GGNCC 2 cut(s) 96, 222
SchI GAGTC 3 cut(s) 121, 127, 1101
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 2 cut(s) 619, 1080
SfaNI GCATC 4 cut(s) 343, 354, 517, 1227
SfcI CTRYAG 2 cut(s) 102, 1052
Sfr274I CTCGAG 1 cut(s) 507
SinI GGWCC 1 cut(s) 96
SlaI CTCGAG 1 cut(s) 507
SmiMI CAYNNNNRTG 2 cut(s) 525, 1274
SmlI CTYRAG 4 cut(s) 385, 485, 507, 977
SmoI CTYRAG 4 cut(s) 385, 485, 507, 977
Sse9I AATT 6 cut(s) 248, 278, 391, 456, 585, 839
SsiI CCGC 7 cut(s) 50, 162, 189, 421, 921, 1048, 1158
SspI AATATT 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 174
TaaI ACNGT 3 cut(s) 219, 305, 621
TaiI ACGT 1 cut(s) 1215
TaqI TCGA 4 cut(s) 204, 312, 508, 1265
TasI AATT 6 cut(s) 248, 278, 391, 456, 585, 839
TauI GCSGC 1 cut(s) 1051
TfiI GAWTC 2 cut(s) 192, 773
Tru1I TTAA 6 cut(s) 72, 629, 695, 960, 1002, 1061
Tru9I TTAA 6 cut(s) 72, 629, 695, 960, 1002, 1061
TscAI CASTG 3 cut(s) 106, 224, 624
TseI GCWGC 5 cut(s) 322, 548, 1045, 1051, 1123
TspDTI ATGAA 1 cut(s) 647
TspRI CASTG 3 cut(s) 106, 224, 624
Tth111I GACNNNGTC 1 cut(s) 346
Van91I CCANNNNNTGG 1 cut(s) 1172
VpaK11BI GGWCC 1 cut(s) 96
XhoI CTCGAG 1 cut(s) 507
ZraI GACGTC 1 cut(s) 1213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.