Rw4G024370

nucleotide exchange factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0009449
Physical Location & Seq
Reverse (-)
50204509 .. 50206346
1838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G024370.1

Sequence Viewer

Length: 1221 bp
ATGGAGCTTCGGAGTTCATGGATGGTAGCGTTAACGTTGACGGCGGTGATGGTTACGGCCGTTACGGCAGACCGGAGTAATAACAAGTCGGGAGGTTTATACTGGTCAACGGCGGAAGAGGAGGCTCAGGCTCAGCTTCAGCCTAGGGTTGACGATTCCGCCGTGGACGCCGACTTCGACGCCGACGGAGGCTTCTCCTCGCTCGATTCGATGTTGCAGTGGGCGTTGGGTCACTCGGATCCCGATCAATTGAAAGAAGCGGCGAAGGAGGTGCAGGGATTGAACCCTTCCGACCTGAACAAGCGGCGGCTCGAGATAAAGCAGCTCATGGAGGAGCTCAAAACGCCGTCGGATGCTCAGCTGATGAAGGTGGCGATACTCGACCTGAAGAACTCGTCGTTGTCGCTCGAAGATCGGCACCGGGCTTTGGAGGAGCTGCTGGAGCTTGTTGAGCCGATTGACAATGCGAATGATTTGAACAAGCTTGGAGGACTTGCTGTGGTGATAGGAGAGCTTGATCATTCTGATTCAGAGACGAGGAAAATGGCTGCATGGATTATTGGGAAGGCTAGTCAGAACAATCCACTTGTTCAGAAGCAGGTTTTGGAACTTGGGGCACTGTCAAAGCTAATGAAGATGGTAAAATCGAGCTTTGTGGAAGAAGCCATTAAGGCAATTTATGCTGTTTCAGCCTTGCTGAGGAATAATATAGCTGGTCAGGAAATCTTCTATGAGGAATCTGGCAAAAACTGCTTCAGTGATTCGAGCATTGGTAACAGACTGCGCATAAGAGCTGTGGTTCTTCTGGGAGATCTTGCAGAGTTTCAATTAGGAAATACAGATAAGGACGAGCGGCCCTTTTTCAGTAATCGCATTTTCTTGAAGTCTGTTGTTGATCTAACATCAGCTGCTGATCTTCACCTACAGGAAAAGGCCCTCATTGCAATTAAGAGTCTTCTGCGACTCAAGACAACTGAAGCTCTGGTGTTTAAGGACTTTTGTGGGTTGGATGCTGCATTGGAGAGAATGAGGCAGCAGCTGCAGGACTTAATGGTAGAGGAATACCACAGAGATTATGCAATGGATGTAGAAAGCCTCCGCAGTGAAGTGCAGCTGATTTTCCAAAGAAAGCTGGAAAAGCCATTACTTATCGGCACAAAGCTGGACTGCGATAGTTGGTGTGGTTTAGGTATTGTCATAGTTGTTAGATTACTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Fes1

Protein Analysis

406

Amino Acids

45.2

Weight (kDa)

4.94

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fes1 PF08609 68 - 159 1.3e-17 Nucleotide exchange factor Fes1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 785
Acc36I ACCTGC 1 cut(s) 589
AccB1I GGYRCC 1 cut(s) 417
AccBSI CCGCTC 1 cut(s) 853
AciI CCGC 8 cut(s) 44, 113, 159, 260, 304, 307, 853, 1099
AclI AACGTT 1 cut(s) 35
AclWI GGATC 2 cut(s) 233, 246
AcoI YGGCCR 1 cut(s) 57
AcuI CTGAAG 4 cut(s) 122, 407, 739, 996
AcyI GRCGYC 2 cut(s) 168, 180
AfiI CCNNNNNNNGG 2 cut(s) 427, 699
AgsI TTSAA 5 cut(s) 253, 283, 478, 827, 883
AjuI GAANNNNNNNTTGG 2 cut(s) 587, 619
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 1 cut(s) 527
AlwI GGATC 2 cut(s) 233, 246
AlwNI CAGNNNCTG 2 cut(s) 911, 1039
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 3 cut(s) 57, 854, 933
ApeKI GCWGC 9 cut(s) 322, 436, 548, 908, 1013, 1033, 1036, 1039, 1111
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AspA2I CCTAGG 1 cut(s) 143
AspLEI GCGC 1 cut(s) 786
AspS9I GGNCC 2 cut(s) 855, 934
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 3 cut(s) 58, 514, 911
AvaI CYCGRG 1 cut(s) 311
AvrII CCTAGG 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 619
BamHI GGATCC 1 cut(s) 238
BanI GGYRCC 1 cut(s) 417
BanII GRGCYC 1 cut(s) 339
BbsI GAAGAC 1 cut(s) 947
Bbv12I GWGCWC 1 cut(s) 339
BbvCI CCTCAGC 1 cut(s) 698
BbvI GCAGC 9 cut(s) 334, 423, 535, 895, 1000, 1026, 1045, 1048, 1123
BccI CCATC 3 cut(s) 16, 43, 631
BceAI ACGGC 7 cut(s) 44, 57, 72, 81, 126, 146, 331
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BclI TGATCA 1 cut(s) 517
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 1 cut(s) 527
BfaI CTAG 2 cut(s) 144, 570
BfmI CTRYAG 2 cut(s) 923, 1040
BfuAI ACCTGC 1 cut(s) 589
BglI GCCNNNNNGGC 2 cut(s) 65, 671
BglII AGATCT 1 cut(s) 811
BlnI CCTAGG 1 cut(s) 143
BlpI GCTNAGC 2 cut(s) 132, 357
Bme1390I CCNGG 1 cut(s) 422
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 2 cut(s) 855, 934
BmiI GGNNCC 2 cut(s) 240, 419
BmrFI CCNGG 1 cut(s) 422
BmsI GCATC 2 cut(s) 343, 1000
BpiI GAAGAC 1 cut(s) 947
BpmI CTGGAG 1 cut(s) 461
Bpu10I CCTNAGC 2 cut(s) 126, 698
Bpu1102I GCTNAGC 2 cut(s) 132, 357
BpuEI CTTGAG 1 cut(s) 950
BpuMI CCSGG 1 cut(s) 422
BsaBI GATNNNNATC 1 cut(s) 243
BsaHI GRCGYC 2 cut(s) 168, 180
BsaJI CCNNGG 2 cut(s) 143, 162
BsaWI WCCGGW 1 cut(s) 72
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 699
Bse1I ACTGG 1 cut(s) 107
Bse3DI GCAATG 2 cut(s) 939, 1086
Bse8I GATNNNNATC 1 cut(s) 243
BseDI CCNNGG 2 cut(s) 143, 162
BseGI GGATG 4 cut(s) 27, 358, 1015, 1090
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 2 cut(s) 427, 699
BseMI GCAATG 2 cut(s) 939, 1086
BseMII CTCAG 4 cut(s) 140, 146, 371, 689
BseNI ACTGG 1 cut(s) 107
BseRI GAGGAG 4 cut(s) 134, 187, 347, 446
BseSI GKGCMC 1 cut(s) 619
BseX3I CGGCCG 1 cut(s) 57
BseXI GCAGC 9 cut(s) 334, 423, 535, 895, 1000, 1026, 1045, 1048, 1123
BsgI GTGCAG 2 cut(s) 293, 1130
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 3 cut(s) 59, 856, 935
BshNI GGYRCC 1 cut(s) 417
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 339
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 2 cut(s) 73, 421
BslI CCNNNNNNNGG 2 cut(s) 427, 699
BsmAI GTCTC 1 cut(s) 527
BsmBI CGTCTC 1 cut(s) 527
BsnI GGCC 3 cut(s) 59, 856, 935
BsoBI CYCGRG 1 cut(s) 311
Bsp1286I GDGCHC 2 cut(s) 339, 619
Bsp143I GATC 7 cut(s) 238, 244, 412, 517, 811, 895, 913
Bsp1720I GCTNAGC 2 cut(s) 132, 357
BspACI CCGC 8 cut(s) 44, 113, 159, 260, 304, 307, 853, 1099
BspANI GGCC 3 cut(s) 59, 856, 935
BspCNI CTCAG 4 cut(s) 139, 145, 370, 690
BspLI GGNNCC 2 cut(s) 240, 419
BspMAI CTGCAG 1 cut(s) 1044
BspMI ACCTGC 1 cut(s) 589
BspPI GGATC 2 cut(s) 233, 246
BspT107I GGYRCC 1 cut(s) 417
BsrBI CCGCTC 1 cut(s) 853
BsrDI GCAATG 2 cut(s) 939, 1086
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 143, 162
BssMI GATC 7 cut(s) 238, 244, 412, 517, 811, 895, 913
BssNI GRCGYC 2 cut(s) 168, 180
BssT1I CCWWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 621
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 2 cut(s) 168, 180
BstAPI GCANNNNNTGC 3 cut(s) 680, 750, 1039
BstDEI CTNAG 4 cut(s) 126, 132, 357, 698
BstDSI CCRYGG 1 cut(s) 162
BstENI CCTNNNNNAGG 1 cut(s) 697
BstF5I GGATG 4 cut(s) 27, 358, 1015, 1090
BstHHI GCGC 1 cut(s) 786
BstKTI GATC 7 cut(s) 241, 247, 415, 520, 814, 898, 916
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 7 cut(s) 238, 244, 412, 517, 811, 895, 913
BstMCI CGRYCG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 420
BstSFI CTRYAG 2 cut(s) 923, 1040
BstSLI GKGCMC 1 cut(s) 619
BstV1I GCAGC 9 cut(s) 334, 423, 535, 895, 1000, 1026, 1045, 1048, 1123
BstV2I GAAGAC 1 cut(s) 947
BstX2I RGATCY 2 cut(s) 238, 811
BstYI RGATCY 2 cut(s) 238, 811
BstZI CGGCCG 1 cut(s) 57
BsuRI GGCC 3 cut(s) 59, 856, 935
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 4 cut(s) 27, 358, 1015, 1090
BtsI GCAGTG 2 cut(s) 224, 1108
BtsIMutI CAGTG 4 cut(s) 224, 617, 763, 1108
BveI ACCTGC 1 cut(s) 589
CaiI CAGNNNCTG 2 cut(s) 911, 1039
CfoI GCGC 1 cut(s) 786
Cfr13I GGNCC 2 cut(s) 855, 934
CseI GACGC 2 cut(s) 176, 188
CviAII CATG 3 cut(s) 18, 328, 552
DdeI CTNAG 4 cut(s) 126, 132, 357, 698
DpnI GATC 7 cut(s) 240, 246, 414, 519, 813, 897, 915
DpnII GATC 7 cut(s) 238, 244, 412, 517, 811, 895, 913
EaeI YGGCCR 1 cut(s) 57
EagI CGGCCG 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
EciI GGCGGA 2 cut(s) 128, 148
Ecl136II GAGCTC 1 cut(s) 337
EclXI CGGCCG 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 339
Eco52I CGGCCG 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 337
Eco57I CTGAAG 4 cut(s) 122, 407, 739, 996
Eco88I CYCGRG 1 cut(s) 311
EcoICRI GAGCTC 1 cut(s) 337
EcoNI CCTNNNNNAGG 1 cut(s) 697
EcoO109I RGGNCCY 1 cut(s) 934
EcoT14I CCWWGG 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 143
Esp3I CGTCTC 1 cut(s) 527
FaeI CATG 3 cut(s) 21, 331, 555
FatI CATG 3 cut(s) 17, 327, 551
FbaI TGATCA 1 cut(s) 517
FokI GGATG 4 cut(s) 34, 365, 1022, 1097
FriOI GRGCYC 1 cut(s) 339
FspBI CTAG 2 cut(s) 144, 570
FspI TGCGCA 1 cut(s) 785
GlaI GCGC 1 cut(s) 785
GsuI CTGGAG 1 cut(s) 461
HaeIII GGCC 3 cut(s) 59, 856, 935
HapII CCGG 2 cut(s) 73, 421
HgaI GACGC 2 cut(s) 176, 188
HhaI GCGC 1 cut(s) 786
Hin1I GRCGYC 2 cut(s) 168, 180
Hin1II CATG 3 cut(s) 21, 331, 555
Hin6I GCGC 1 cut(s) 784
HinP1I GCGC 1 cut(s) 784
HincII GTYRAC 4 cut(s) 33, 39, 108, 151
HindII GTYRAC 4 cut(s) 33, 39, 108, 151
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 7 cut(s) 155, 206, 527, 737, 761, 952, 963
HpaI GTTAAC 1 cut(s) 33
HpaII CCGG 2 cut(s) 73, 421
HphI GGTGA 3 cut(s) 58, 514, 911
Hpy166II GTNNAC 5 cut(s) 33, 39, 108, 151, 166
Hpy188I TCNGA 8 cut(s) 12, 238, 292, 352, 526, 532, 576, 594
Hpy188III TCNNGA 6 cut(s) 90, 242, 313, 719, 880, 967
Hpy8I GTNNAC 5 cut(s) 33, 39, 108, 151, 166
Hpy99I CGWCG 4 cut(s) 182, 188, 352, 400
HpyAV CCTTC 4 cut(s) 259, 297, 361, 559
HpyCH4III ACNGT 1 cut(s) 621
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 9 cut(s) 217, 274, 551, 818, 944, 1016, 1042, 1079, 1111
HpyF3I CTNAG 4 cut(s) 126, 132, 357, 698
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 2 cut(s) 168, 180
Hsp92II CATG 3 cut(s) 21, 331, 555
HspAI GCGC 1 cut(s) 784
Ksp22I TGATCA 1 cut(s) 517
KspAI GTTAAC 1 cut(s) 33
Kzo9I GATC 7 cut(s) 238, 244, 412, 517, 811, 895, 913
LmnI GCTCC 4 cut(s) 4, 334, 433, 442
Lsp1109I GCAGC 9 cut(s) 334, 423, 535, 895, 1000, 1026, 1045, 1048, 1123
LweI GCATC 2 cut(s) 343, 1000
MaeI CTAG 2 cut(s) 144, 570
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 4 cut(s) 52, 61, 230, 773
MalI GATC 7 cut(s) 240, 246, 414, 519, 813, 897, 915
MbiI CCGCTC 1 cut(s) 853
MboI GATC 7 cut(s) 238, 244, 412, 517, 811, 895, 913
MboII GAAGA 9 cut(s) 128, 400, 422, 646, 671, 718, 794, 908, 947
MfeI CAATTG 1 cut(s) 248
MflI RGATCY 2 cut(s) 238, 811
MhlI GDGCHC 2 cut(s) 339, 619
MluCI AATT 4 cut(s) 248, 675, 827, 945
MlyI GAGTC 2 cut(s) 957, 961
MmeI TCCRAC 3 cut(s) 315, 330, 987
MseI TTAA 5 cut(s) 32, 669, 948, 990, 1049
MspA1I CMGCKG 4 cut(s) 361, 908, 1039, 1114
MspI CCGG 2 cut(s) 73, 421
MspR9I CCNGG 1 cut(s) 422
MunI CAATTG 1 cut(s) 248
NciI CCSGG 1 cut(s) 422
NdeII GATC 7 cut(s) 238, 244, 412, 517, 811, 895, 913
NlaIII CATG 3 cut(s) 21, 331, 555
NlaIV GGNNCC 2 cut(s) 240, 419
NmuCI GTSAC 1 cut(s) 230
NsbI TGCGCA 1 cut(s) 785
PaeR7I CTCGAG 1 cut(s) 311
PcsI WCGNNNNNNNCGW 3 cut(s) 159, 174, 206
PfeI GAWTC 5 cut(s) 155, 206, 527, 737, 761
PleI GAGTC 2 cut(s) 957, 960
PpsI GAGTC 2 cut(s) 957, 960
Psp124BI GAGCTC 1 cut(s) 339
Psp1406I AACGTT 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 240, 419
PspPI GGNCC 2 cut(s) 855, 934
PstI CTGCAG 1 cut(s) 1044
PstNI CAGNNNCTG 2 cut(s) 911, 1039
PsuI RGATCY 2 cut(s) 238, 811
PvuII CAGCTG 4 cut(s) 361, 908, 1039, 1114
SacI GAGCTC 1 cut(s) 339
SaqAI TTAA 5 cut(s) 32, 669, 948, 990, 1049
Sau3AI GATC 7 cut(s) 238, 244, 412, 517, 811, 895, 913
Sau96I GGNCC 2 cut(s) 855, 934
SchI GAGTC 2 cut(s) 957, 961
ScrFI CCNGG 1 cut(s) 422
SduI GDGCHC 2 cut(s) 339, 619
SfaNI GCATC 2 cut(s) 343, 1000
SfcI CTRYAG 2 cut(s) 923, 1040
Sfr274I CTCGAG 1 cut(s) 311
SlaI CTCGAG 1 cut(s) 311
SmlI CTYRAG 2 cut(s) 311, 965
SmoI CTYRAG 2 cut(s) 311, 965
Sse9I AATT 4 cut(s) 248, 675, 827, 945
SsiI CCGC 8 cut(s) 44, 113, 159, 260, 304, 307, 853, 1099
SspMI CTAG 2 cut(s) 144, 570
SstI GAGCTC 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 420
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 621
TaiI ACGT 1 cut(s) 38
TaqI TCGA 8 cut(s) 177, 204, 209, 312, 381, 408, 647, 764
TasI AATT 4 cut(s) 248, 675, 827, 945
TauI GCSGC 4 cut(s) 263, 307, 310, 856
TfiI GAWTC 5 cut(s) 155, 206, 527, 737, 761
Tru1I TTAA 5 cut(s) 32, 669, 948, 990, 1049
Tru9I TTAA 5 cut(s) 32, 669, 948, 990, 1049
TscAI CASTG 4 cut(s) 224, 624, 763, 1108
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 9 cut(s) 322, 436, 548, 908, 1013, 1033, 1036, 1039, 1111
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 3 cut(s) 6, 380, 647
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 4 cut(s) 224, 624, 763, 1108
XagI CCTNNNNNAGG 1 cut(s) 697
XhoI CTCGAG 1 cut(s) 311
XmaJI CCTAGG 1 cut(s) 143
XspI CTAG 2 cut(s) 144, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.