RLG00000007172

nucleotide exchange factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0009449
Physical Location & Seq
Forward (+)
14248463 .. 14250180
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007172

Sequence Viewer

Length: 1173 bp
ATGGAGCTTCGGAGTTCATGGATGGTAGCGTTAACGTTGACGGCGGTGATGGTTACGGCCGTAACGGCAGACCGGAGTAATAACAAGTCGGGAGGTTTATACTGGTCAACGGCGGAAGAGGAGGCTCAGGCTCAGCTTCAGCCTAGGGTTGACGATTCCGCCGTGGACGCCGACTTCGACGCCGATGGAGGCTTCTCATCGCTCGATTCGATGTTGCAGTGGGCTTTGGGTCACTCCGATCCGGATCAATTGAAAGAAGCGGCGAAGGAGGTGCAGGGATTGAACCCTTCCGACCTGAACAAGCGGCGGCTCGAAATAAAGCAGCTCATGGAGGAGCTCAAAACGCCGTCGGATGCTCAGCTGATGAAGGTGGCGATACTTGACCTGAAGAACTCGTCGTTGTCGCTCGAAGATCGGCACCGGGCTTTGGAGGAGCTGCTGGAGCTTGTTGAGCCGATTGACAATGCAAATGATTTGAACAAGCTTGGAGGACTTGCTGTGGTGATAGGAGAGCTTGATCATTCTGATTCAGAGACGAGGAAAATGGCTGCATGGATTATTGGGAAGGCTAGTCAGAACAATCCACTTGTTCAGAAGCAGGTTTTGGAACTTGGGGCACTGTCTAAGCTAATGAAGATGGTAAAATCGAGCTTTGTGGAAGAAGCCATTAAGGCGATTTATGCTGTTTCAGCCTTGCTGAGGAACAATATAGCAGGTCAGGAAATGTTCTTTGAGGAAGCCGGGCAAAAACTGCTTCAGGACATTGTGAGTGATTCGAGCATTGGTAACAGATTGCGCATAAGAGCTGTGGTTCTTCTGGGAGATCTTGCAGAGTTTCAACTGGGAAATATGGATGAGGATGAGCTGCCATTTTTCAGTAATCACATTTTCTTGAAGTCTGTAGTTGATCTCACATCAGCTGCTGACCTTCACCTACAGGAAAAGGCCCTCATTGCTATTAAGAGTCTTCTACGACTCAAGACAACTGAAGCTCTGGTGTTTAAGGACTTTTGTGGGTTGGATGCTGCATTGGAGAGAATGAGGCAGCAGCTGCAGGACTTAATGGTAGAGGAATACCACAGAGATTATGCAATGGATGTAGAAAGCCTTCGCAGTGAAGTGCAGCTGATTTTCCAAAGAAAGCTGGAAAAGGTAACACAGATGACTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Fes1

Protein Analysis

391

Amino Acids

43.49

Weight (kDa)

4.78

Isoelectric Point (pI)

44.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fes1 PF08609 68 - 159 1.2e-17 Nucleotide exchange factor Fes1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 797
Acc36I ACCTGC 2 cut(s) 589, 704
AccB1I GGYRCC 1 cut(s) 417
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 6 cut(s) 44, 113, 159, 260, 304, 307
AclI AACGTT 1 cut(s) 35
AclWI GGATC 2 cut(s) 233, 252
AcoI YGGCCR 1 cut(s) 57
AcuI CTGAAG 4 cut(s) 122, 407, 740, 1008
AcyI GRCGYC 2 cut(s) 168, 180
AfiI CCNNNNNNNGG 2 cut(s) 427, 699
AgsI TTSAA 5 cut(s) 253, 283, 478, 839, 895
AjuI GAANNNNNNNTTGG 2 cut(s) 587, 619
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 1 cut(s) 527
AlwI GGATC 2 cut(s) 233, 252
AlwNI CAGNNNCTG 2 cut(s) 923, 1051
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 2 cut(s) 57, 945
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
Asp700I GAANNNNTTC 1 cut(s) 1107
AspA2I CCTAGG 1 cut(s) 143
AspLEI GCGC 1 cut(s) 798
AspS9I GGNCC 1 cut(s) 946
AsuC2I CCSGG 2 cut(s) 422, 742
AsuHPI GGTGA 3 cut(s) 58, 514, 923
AvrII CCTAGG 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 619
BanI GGYRCC 1 cut(s) 417
BanII GRGCYC 1 cut(s) 339
BarI GAAGNNNNNNTAC 2 cut(s) 1092, 1124
BbsI GAAGAC 1 cut(s) 959
Bbv12I GWGCWC 1 cut(s) 339
BbvCI CCTCAGC 1 cut(s) 698
BccI CCATC 4 cut(s) 16, 43, 179, 631
BceAI ACGGC 7 cut(s) 44, 57, 72, 81, 126, 146, 331
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BclI TGATCA 1 cut(s) 517
BcnI CCSGG 2 cut(s) 422, 742
BcoDI GTCTC 1 cut(s) 527
BfaI CTAG 2 cut(s) 144, 570
BfmI CTRYAG 3 cut(s) 900, 935, 1052
BfuAI ACCTGC 2 cut(s) 589, 704
BglI GCCNNNNNGGC 2 cut(s) 65, 671
BglII AGATCT 1 cut(s) 823
BlnI CCTAGG 1 cut(s) 143
BlpI GCTNAGC 2 cut(s) 132, 357
Bme1390I CCNGG 2 cut(s) 422, 742
BmgT120I GGNCC 1 cut(s) 946
BmiI GGNNCC 1 cut(s) 419
BmrFI CCNGG 2 cut(s) 422, 742
BmrI ACTGGG 1 cut(s) 851
BmsI GCATC 2 cut(s) 343, 1012
BmuI ACTGGG 1 cut(s) 851
BpiI GAAGAC 1 cut(s) 959
BpmI CTGGAG 1 cut(s) 461
Bpu10I CCTNAGC 2 cut(s) 126, 698
Bpu1102I GCTNAGC 2 cut(s) 132, 357
BpuEI CTTGAG 1 cut(s) 962
BpuMI CCSGG 2 cut(s) 422, 742
BsaBI GATNNNNATC 1 cut(s) 243
BsaHI GRCGYC 2 cut(s) 168, 180
BsaJI CCNNGG 2 cut(s) 143, 162
BsaWI WCCGGW 2 cut(s) 72, 241
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 699
Bse1I ACTGG 2 cut(s) 107, 846
Bse3DI GCAATG 2 cut(s) 951, 1098
Bse8I GATNNNNATC 1 cut(s) 243
BseAI TCCGGA 1 cut(s) 241
BseDI CCNNGG 2 cut(s) 143, 162
BseGI GGATG 6 cut(s) 27, 358, 859, 865, 1027, 1102
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 2 cut(s) 427, 699
BseMI GCAATG 2 cut(s) 951, 1098
BseMII CTCAG 4 cut(s) 140, 146, 371, 689
BseNI ACTGG 2 cut(s) 107, 846
BseRI GAGGAG 3 cut(s) 134, 347, 446
BseSI GKGCMC 1 cut(s) 619
BseX3I CGGCCG 1 cut(s) 57
BsgI GTGCAG 2 cut(s) 293, 1142
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 59, 947
BshNI GGYRCC 1 cut(s) 417
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 339
BsiSI CCGG 4 cut(s) 73, 242, 421, 741
BslI CCNNNNNNNGG 2 cut(s) 427, 699
BsmAI GTCTC 1 cut(s) 527
BsmBI CGTCTC 1 cut(s) 527
BsnI GGCC 2 cut(s) 59, 947
Bsp1286I GDGCHC 2 cut(s) 339, 619
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 6 cut(s) 238, 244, 412, 517, 823, 907
Bsp1720I GCTNAGC 2 cut(s) 132, 357
BspACI CCGC 6 cut(s) 44, 113, 159, 260, 304, 307
BspANI GGCC 2 cut(s) 59, 947
BspCNI CTCAG 4 cut(s) 139, 145, 370, 690
BspEI TCCGGA 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 419
BspMAI CTGCAG 1 cut(s) 1056
BspMI ACCTGC 2 cut(s) 589, 704
BspPI GGATC 2 cut(s) 233, 252
BspT107I GGYRCC 1 cut(s) 417
BsrDI GCAATG 2 cut(s) 951, 1098
BsrI ACTGG 2 cut(s) 107, 846
BssECI CCNNGG 2 cut(s) 143, 162
BssMI GATC 6 cut(s) 238, 244, 412, 517, 823, 907
BssNI GRCGYC 2 cut(s) 168, 180
BssT1I CCWWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 621
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 2 cut(s) 168, 180
BstAPI GCANNNNNTGC 2 cut(s) 751, 1051
BstDEI CTNAG 5 cut(s) 126, 132, 357, 624, 698
BstDSI CCRYGG 1 cut(s) 162
BstENI CCTNNNNNAGG 1 cut(s) 697
BstF5I GGATG 6 cut(s) 27, 358, 859, 865, 1027, 1102
BstHHI GCGC 1 cut(s) 798
BstKTI GATC 6 cut(s) 241, 247, 415, 520, 826, 910
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 6 cut(s) 238, 244, 412, 517, 823, 907
BstMCI CGRYCG 1 cut(s) 60
BstSCI CCNGG 2 cut(s) 420, 740
BstSFI CTRYAG 3 cut(s) 900, 935, 1052
BstSLI GKGCMC 1 cut(s) 619
BstV2I GAAGAC 1 cut(s) 959
BstX2I RGATCY 1 cut(s) 823
BstYI RGATCY 1 cut(s) 823
BstZI CGGCCG 1 cut(s) 57
BsuRI GGCC 2 cut(s) 59, 947
BtgI CCRYGG 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 183
BtsCI GGATG 6 cut(s) 27, 358, 859, 865, 1027, 1102
BtsI GCAGTG 2 cut(s) 224, 1120
BtsIMutI CAGTG 3 cut(s) 224, 617, 1120
BveI ACCTGC 2 cut(s) 589, 704
CaiI CAGNNNCTG 2 cut(s) 923, 1051
CfoI GCGC 1 cut(s) 798
Cfr13I GGNCC 1 cut(s) 946
CseI GACGC 2 cut(s) 176, 188
CviAII CATG 4 cut(s) 18, 328, 552, 1170
DdeI CTNAG 5 cut(s) 126, 132, 357, 624, 698
DpnI GATC 6 cut(s) 240, 246, 414, 519, 825, 909
DpnII GATC 6 cut(s) 238, 244, 412, 517, 823, 907
EaeI YGGCCR 1 cut(s) 57
EagI CGGCCG 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
EciI GGCGGA 2 cut(s) 128, 148
Ecl136II GAGCTC 1 cut(s) 337
EclXI CGGCCG 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 339
Eco52I CGGCCG 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 337
Eco57I CTGAAG 4 cut(s) 122, 407, 740, 1008
EcoICRI GAGCTC 1 cut(s) 337
EcoNI CCTNNNNNAGG 1 cut(s) 697
EcoO109I RGGNCCY 1 cut(s) 946
EcoT14I CCWWGG 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 143
Esp3I CGTCTC 1 cut(s) 527
FaeI CATG 4 cut(s) 21, 331, 555, 1173
FatI CATG 4 cut(s) 17, 327, 551, 1169
FbaI TGATCA 1 cut(s) 517
FokI GGATG 6 cut(s) 34, 365, 866, 872, 1034, 1109
FriOI GRGCYC 1 cut(s) 339
FspBI CTAG 2 cut(s) 144, 570
FspI TGCGCA 1 cut(s) 797
GlaI GCGC 1 cut(s) 797
GsuI CTGGAG 1 cut(s) 461
HaeIII GGCC 2 cut(s) 59, 947
HapII CCGG 4 cut(s) 73, 242, 421, 741
HgaI GACGC 2 cut(s) 176, 188
HhaI GCGC 1 cut(s) 798
Hin1I GRCGYC 2 cut(s) 168, 180
Hin1II CATG 4 cut(s) 21, 331, 555, 1173
Hin6I GCGC 1 cut(s) 796
HinP1I GCGC 1 cut(s) 796
HincII GTYRAC 4 cut(s) 33, 39, 108, 151
HindII GTYRAC 4 cut(s) 33, 39, 108, 151
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 6 cut(s) 155, 206, 527, 773, 964, 975
HpaI GTTAAC 1 cut(s) 33
HpaII CCGG 4 cut(s) 73, 242, 421, 741
HphI GGTGA 3 cut(s) 58, 514, 923
Hpy166II GTNNAC 5 cut(s) 33, 39, 108, 151, 166
Hpy188I TCNGA 8 cut(s) 12, 238, 292, 352, 526, 532, 576, 594
Hpy188III TCNNGA 6 cut(s) 90, 242, 719, 758, 892, 979
Hpy8I GTNNAC 5 cut(s) 33, 39, 108, 151, 166
Hpy99I CGWCG 3 cut(s) 182, 352, 400
HpyAV CCTTC 6 cut(s) 259, 297, 361, 559, 938, 1118
HpyCH4III ACNGT 1 cut(s) 621
HpyCH4IV ACGT 1 cut(s) 35
HpyF3I CTNAG 5 cut(s) 126, 132, 357, 624, 698
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 2 cut(s) 168, 180
Hsp92II CATG 4 cut(s) 21, 331, 555, 1173
HspAI GCGC 1 cut(s) 796
Kpn2I TCCGGA 1 cut(s) 241
Ksp22I TGATCA 1 cut(s) 517
KspAI GTTAAC 1 cut(s) 33
Kzo9I GATC 6 cut(s) 238, 244, 412, 517, 823, 907
LmnI GCTCC 4 cut(s) 4, 334, 433, 442
LweI GCATC 2 cut(s) 343, 1012
MaeI CTAG 2 cut(s) 144, 570
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 5 cut(s) 52, 61, 230, 785, 1153
MalI GATC 6 cut(s) 240, 246, 414, 519, 825, 909
MboI GATC 6 cut(s) 238, 244, 412, 517, 823, 907
MboII GAAGA 7 cut(s) 128, 400, 422, 646, 671, 806, 959
MfeI CAATTG 1 cut(s) 248
MflI RGATCY 1 cut(s) 823
MhlI GDGCHC 2 cut(s) 339, 619
MluCI AATT 1 cut(s) 248
MlyI GAGTC 2 cut(s) 969, 973
MmeI TCCRAC 3 cut(s) 315, 330, 999
MroI TCCGGA 1 cut(s) 241
MroXI GAANNNNTTC 1 cut(s) 1107
MseI TTAA 5 cut(s) 32, 669, 960, 1002, 1061
MspA1I CMGCKG 4 cut(s) 361, 920, 1051, 1126
MspI CCGG 4 cut(s) 73, 242, 421, 741
MspR9I CCNGG 2 cut(s) 422, 742
MunI CAATTG 1 cut(s) 248
NciI CCSGG 2 cut(s) 422, 742
NdeII GATC 6 cut(s) 238, 244, 412, 517, 823, 907
NlaIII CATG 4 cut(s) 21, 331, 555, 1173
NlaIV GGNNCC 1 cut(s) 419
NmuCI GTSAC 1 cut(s) 230
NsbI TGCGCA 1 cut(s) 797
PcsI WCGNNNNNNNCGW 3 cut(s) 159, 174, 206
PdmI GAANNNNTTC 1 cut(s) 1107
PfeI GAWTC 4 cut(s) 155, 206, 527, 773
PleI GAGTC 2 cut(s) 969, 972
PpsI GAGTC 2 cut(s) 969, 972
Psp124BI GAGCTC 1 cut(s) 339
Psp1406I AACGTT 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 419
PspPI GGNCC 1 cut(s) 946
PstI CTGCAG 1 cut(s) 1056
PstNI CAGNNNCTG 2 cut(s) 923, 1051
PsuI RGATCY 1 cut(s) 823
PvuII CAGCTG 4 cut(s) 361, 920, 1051, 1126
SacI GAGCTC 1 cut(s) 339
SaqAI TTAA 5 cut(s) 32, 669, 960, 1002, 1061
Sau3AI GATC 6 cut(s) 238, 244, 412, 517, 823, 907
Sau96I GGNCC 1 cut(s) 946
SchI GAGTC 2 cut(s) 969, 973
ScrFI CCNGG 2 cut(s) 422, 742
SduI GDGCHC 2 cut(s) 339, 619
SfaNI GCATC 2 cut(s) 343, 1012
SfcI CTRYAG 3 cut(s) 900, 935, 1052
SmlI CTYRAG 1 cut(s) 977
SmoI CTYRAG 1 cut(s) 977
Sse9I AATT 1 cut(s) 248
SsiI CCGC 6 cut(s) 44, 113, 159, 260, 304, 307
SspMI CTAG 2 cut(s) 144, 570
SstI GAGCTC 1 cut(s) 339
StyD4I CCNGG 2 cut(s) 420, 740
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 621
TaiI ACGT 1 cut(s) 38
TaqI TCGA 7 cut(s) 177, 204, 209, 312, 408, 647, 776
TasI AATT 1 cut(s) 248
TauI GCSGC 3 cut(s) 263, 307, 310
TfiI GAWTC 4 cut(s) 155, 206, 527, 773
Tru1I TTAA 5 cut(s) 32, 669, 960, 1002, 1061
Tru9I TTAA 5 cut(s) 32, 669, 960, 1002, 1061
TscAI CASTG 3 cut(s) 224, 624, 1120
TseFI GTSAC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 3 cut(s) 6, 380, 647
TspRI CASTG 3 cut(s) 224, 624, 1120
XagI CCTNNNNNAGG 1 cut(s) 697
XmaJI CCTAGG 1 cut(s) 143
XmnI GAANNNNTTC 1 cut(s) 1107
XspI CTAG 2 cut(s) 144, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.