Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008075

Physical Location & Seq

Genomic Coordinates Reverse (-)

19323750 .. 19325895

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52110.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGAGCCTGCTCATATCGATTGGAAGAGAATCGATTCTCGTTTTGTTGAAGACGTTTTTTACGAACACATCAGAGCTCCTAAATGGTTCGATTTCTTGGCCCCTACCCATTTTGACTCCATTGACGACGATGCTTGGTTCTGCAAACCTGAATGTAATCATCCCAAGAGACCTGAGGACTTTTTCTCAACGCCGACTTCTTCCAAGCATCCAAGTCTGAGGGATACGAATGAGACTCTAACAGAGCAGAATCAGAGGAGGAGGGGATATGCTTTATCACCTTCTACTCCAAACAACCAAGAAAGTGAAAATCAGAACCCGAACTTAGCCACACCTCCAAGCTACCAAGCAAAATCATGGAGAGCAGCAATTAAATCAACTTCTGTCAAGAAGATGAATAAAGAAGTTCCAAGACTAAAGAGCACACAATCAGCTAGAAATCTGTTTTCAGGGAGAGACATATTTGGTCATATCTCAGATTTCTGCTATGAATTGAAGAGATTAGCCACAAGGGTTACTGAGAGAGAAGATACTGGGAAATCTGAAGTGAAGGAGAGTCATCAAGTGGGTGAAATAGTAAATCAGCCTTACTCTGTTCATGACTTGGAATTGAAAAAGGAAAGAAAGCCACTGCTTGAAGTAAGCAAAGATAAGCTCCCTGAGTCCACGGATGTTAAAGGAAGCACATTTAAAGAGAACCGTAGAAGAAAGAAGAGAGTGGATGATGCAGAGAACATTCCTGTCTCACTTAATGTGGAGACTGTAAAAAACAAAGGAGAGGAGGGTAGAAGAAAGAAGAGAATGGATGATGCAGAGAACATCCCAGTTCCTCTAAAACTGGAGACTATAAAGAACAAAGGACACGAACGATTCCTGCAGCAAATCAGGACAAACCCACCATCTCCTCAATGCTTCTCTGAGAACCGGACAGCTACATTGAAACCCTTGAGGACCAAACCTACGGAAGTGTTGAAGAGAAAGGAAGATGAAGCTGAAGAAGAAAAGAACAGAAAGAGTGGAGAAAGCAAAGAAGCAACAAGGGGATTGGACGTTCTCTGGTTCTTAAAGCCTTGCACTTTAGCCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

362

Amino Acids

41.98

Weight (kDa)

9.13

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52110 AT3G52110 AT3G52110 AT3G52110
fragaria_vesca	FvH4_7g00980 FvH4_7g00980 FvH4_7g00980
malus_domestica	MD02G1313000.v1.1 MD07G1009400.v1.1
prunus_persica	Prupe.2G012400_v2.0.a1 Prupe.2G012400_v2.0.a1
pyrus_communis	pycom02g26260 pycom07g00840
rosa_chinensis	RchiOBHm_Chr1g0315881
rosa_laevigata	RLG00000030726
rosa_multiflora	Rmu_sc0012813.1_g000008 Rmu_ssc0000154.1_g000015
rosa_roxburghii	Rroxscaffold_4G00331350
rosa_rugosa	Rorug01G0006800
rosa_samantha	Rh1AG017500 Rh1BG010000 Rh1CG014800 Rh1DG010400
rosa_wichuraiana	Rw1G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	564, 1014
AgsI	TTSAA	6 cut(s)	50, 496, 613, 638, 940, 973
AloI	GAACNNNNNNTCC	2 cut(s)	1035, 1067
AluBI	AGCT	6 cut(s)	77, 342, 434, 655, 932, 992
AluI	AGCT	6 cut(s)	77, 342, 434, 655, 932, 992
Alw21I	GWGCWC	2 cut(s)	79, 425
Alw26I	GTCTC	6 cut(s)	163, 227, 450, 748, 752, 836
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	365, 877
Asp700I	GAANNNNTTC	1 cut(s)	34
AspS9I	GGNCC	2 cut(s)	100, 951
AsuHPI	GGTGA	2 cut(s)	270, 581
AvaII	GGWCC	1 cut(s)	951
AxyI	CCTNAGG	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	2 cut(s)	79, 425
BbvI	GCAGC	2 cut(s)	377, 889
BccI	CCATC	1 cut(s)	907
BciVI	GTATCC	1 cut(s)	217
BcoDI	GTCTC	6 cut(s)	163, 227, 450, 748, 752, 836
BfaI	CTAG	2 cut(s)	435, 1087
BfmI	CTRYAG	1 cut(s)	875
BfuI	GTATCC	1 cut(s)	217
BisI	GCNGC	2 cut(s)	366, 878
BlsI	GCNGC	2 cut(s)	367, 879
Bme18I	GGWCC	1 cut(s)	951
BmgT120I	GGNCC	2 cut(s)	100, 951
BmiI	GGNNCC	2 cut(s)	6, 102
BmrI	ACTGGG	2 cut(s)	543, 818
BmsI	GCATC	4 cut(s)	121, 217, 715, 799
BmuI	ACTGGG	2 cut(s)	543, 818
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	860
BpuEI	CTTGAG	1 cut(s)	967
Bsa29I	ATCGAT	2 cut(s)	18, 33
BsaI	GGTCTC	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	666
BsaWI	WCCGGW	1 cut(s)	924
Bse1I	ACTGG	3 cut(s)	538, 824, 843
Bse21I	CCTNAGG	1 cut(s)	174
BseCI	ATCGAT	2 cut(s)	18, 33
BseDI	CCNNGG	1 cut(s)	666
BseGI	GGATG	6 cut(s)	160, 208, 676, 727, 811, 819
BseMII	CTCAG	6 cut(s)	165, 209, 489, 510, 651, 909
BseNI	ACTGG	3 cut(s)	538, 824, 843
BseRI	GAGGAG	4 cut(s)	271, 274, 794, 894
BseXI	GCAGC	2 cut(s)	377, 889
BshFI	GGCC	1 cut(s)	101
BshVI	ATCGAT	2 cut(s)	18, 33
BsiHKAI	GWGCWC	2 cut(s)	79, 425
BsiSI	CCGG	1 cut(s)	925
BsmAI	GTCTC	6 cut(s)	163, 227, 450, 748, 752, 836
BsnI	GGCC	1 cut(s)	101
Bso31I	GGTCTC	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	79, 425
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	6 cut(s)	166, 210, 488, 511, 652, 910
BspDI	ATCGAT	2 cut(s)	18, 33
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	2 cut(s)	6, 102
BspMAI	CTGCAG	1 cut(s)	879
BspTNI	GGTCTC	1 cut(s)	163
BsrI	ACTGG	3 cut(s)	538, 824, 843
BssECI	CCNNGG	1 cut(s)	666
Bst4CI	ACNGT	2 cut(s)	701, 763
Bst6I	CTCTTC	5 cut(s)	20, 491, 707, 791, 968
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	7 cut(s)	174, 218, 325, 475, 519, 660, 918
BstDSI	CCRYGG	1 cut(s)	666
BstF5I	GGATG	6 cut(s)	160, 208, 676, 727, 811, 819
BstMAI	GTCTC	6 cut(s)	163, 227, 450, 748, 752, 836
BstSFI	CTRYAG	1 cut(s)	875
BstV1I	GCAGC	2 cut(s)	377, 889
BstV2I	GAAGAC	1 cut(s)	57
Bsu15I	ATCGAT	2 cut(s)	18, 33
Bsu36I	CCTNAGG	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	101
BsuTUI	ATCGAT	2 cut(s)	18, 33
BtgI	CCRYGG	1 cut(s)	666
BtsCI	GGATG	6 cut(s)	160, 208, 676, 727, 811, 819
BtsI	GCAGTG	1 cut(s)	629
BtsIMutI	CAGTG	1 cut(s)	629
Cac8I	GCNNGC	1 cut(s)	9
CciI	TCATGA	1 cut(s)	598
Cfr13I	GGNCC	2 cut(s)	100, 951
ClaI	ATCGAT	2 cut(s)	18, 33
CviAII	CATG	2 cut(s)	357, 599
DdeI	CTNAG	7 cut(s)	174, 218, 325, 475, 519, 660, 918
DraI	TTTAAA	1 cut(s)	691
Eam1104I	CTCTTC	5 cut(s)	20, 491, 707, 791, 968
EarI	CTCTTC	5 cut(s)	20, 491, 707, 791, 968
Ecl136II	GAGCTC	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	951
Eco53kI	GAGCTC	1 cut(s)	77
Eco57I	CTGAAG	2 cut(s)	564, 1014
Eco81I	CCTNAGG	1 cut(s)	174
EcoICRI	GAGCTC	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	79
FaeI	CATG	2 cut(s)	360, 602
FaiI	YATR	8 cut(s)	15, 270, 358, 461, 471, 489, 600, 848
FatI	CATG	2 cut(s)	356, 598
Fnu4HI	GCNGC	2 cut(s)	366, 878
FokI	GGATG	6 cut(s)	147, 195, 683, 734, 806, 818
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	2 cut(s)	366, 878
FspBI	CTAG	2 cut(s)	435, 1087
GluI	GCNGC	2 cut(s)	366, 878
GsuI	CTGGAG	1 cut(s)	860
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	1 cut(s)	925
Hin1II	CATG	2 cut(s)	360, 602
HinfI	GANTC	8 cut(s)	30, 35, 116, 235, 250, 556, 662, 870
HpaII	CCGG	1 cut(s)	925
HphI	GGTGA	2 cut(s)	270, 581
Hpy166II	GTNNAC	1 cut(s)	666
Hpy188I	TCNGA	7 cut(s)	74, 219, 255, 315, 478, 544, 919
Hpy188III	TCNNGA	3 cut(s)	388, 599, 886
Hpy8I	GTNNAC	1 cut(s)	666
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	291, 544
HpyCH4III	ACNGT	2 cut(s)	701, 763
HpyCH4IV	ACGT	2 cut(s)	54, 1050
HpyCH4V	TGCA	5 cut(s)	144, 728, 812, 877, 1074
HpyF3I	CTNAG	7 cut(s)	174, 218, 325, 475, 519, 660, 918
HpySE526I	ACGT	2 cut(s)	54, 1050
Hsp92II	CATG	2 cut(s)	360, 602
LmnI	GCTCC	3 cut(s)	4, 82, 660
Lsp1109I	GCAGC	2 cut(s)	377, 889
LweI	GCATC	4 cut(s)	121, 217, 715, 799
MaeI	CTAG	2 cut(s)	435, 1087
MaeII	ACGT	2 cut(s)	54, 1050
MaeIII	GTNAC	1 cut(s)	514
MhlI	GDGCHC	2 cut(s)	79, 425
MluCI	AATT	3 cut(s)	369, 491, 608
MlyI	GAGTC	4 cut(s)	110, 229, 565, 671
MroXI	GAANNNNTTC	1 cut(s)	34
MseI	TTAA	5 cut(s)	372, 675, 690, 750, 1064
MspI	CCGG	1 cut(s)	925
NlaIII	CATG	2 cut(s)	360, 602
NlaIV	GGNNCC	2 cut(s)	6, 102
PagI	TCATGA	1 cut(s)	598
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	34
PfeI	GAWTC	4 cut(s)	30, 35, 250, 870
PkrI	GCNGC	2 cut(s)	367, 879
PleI	GAGTC	4 cut(s)	110, 229, 564, 670
PpsI	GAGTC	4 cut(s)	110, 229, 564, 670
Psp124BI	GAGCTC	1 cut(s)	79
PspN4I	GGNNCC	2 cut(s)	6, 102
PspPI	GGNCC	2 cut(s)	100, 951
PstI	CTGCAG	1 cut(s)	879
SacI	GAGCTC	1 cut(s)	79
SaqAI	TTAA	5 cut(s)	372, 675, 690, 750, 1064
SatI	GCNGC	2 cut(s)	366, 878
Sau96I	GGNCC	2 cut(s)	100, 951
SchI	GAGTC	4 cut(s)	110, 229, 565, 671
SduI	GDGCHC	2 cut(s)	79, 425
SfaNI	GCATC	4 cut(s)	121, 217, 715, 799
SfcI	CTRYAG	1 cut(s)	875
SinI	GGWCC	1 cut(s)	951
SmlI	CTYRAG	1 cut(s)	946
SmoI	CTYRAG	1 cut(s)	946
Sse9I	AATT	3 cut(s)	369, 491, 608
SspMI	CTAG	2 cut(s)	435, 1087
SstI	GAGCTC	1 cut(s)	79
TaaI	ACNGT	2 cut(s)	701, 763
TaiI	ACGT	2 cut(s)	57, 1053
TaqI	TCGA	3 cut(s)	18, 33, 90
TasI	AATT	3 cut(s)	369, 491, 608
TfiI	GAWTC	4 cut(s)	30, 35, 250, 870
Tru1I	TTAA	5 cut(s)	372, 675, 690, 750, 1064
Tru9I	TTAA	5 cut(s)	372, 675, 690, 750, 1064
TscAI	CASTG	1 cut(s)	636
TseI	GCWGC	2 cut(s)	365, 877
TspDTI	ATGAA	4 cut(s)	410, 504, 587, 1002
TspGWI	ACGGA	2 cut(s)	683, 977
TspRI	CASTG	1 cut(s)	636
VpaK11BI	GGWCC	1 cut(s)	951
XmnI	GAANNNNTTC	1 cut(s)	34
XspI	CTAG	2 cut(s)	435, 1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.