Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008075

Physical Location & Seq

Genomic Coordinates Forward (+)

2965769 .. 2968836

Gene Structure 3068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG017500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGAACCTGCAAAAATAGATTGGAAAAACTTGGAATGGAGATTTGTAGAGGACAAAGCCTACGAGCAGATCAACGCTCCCAAGTGGTTCGATTTCTTGAACCCCAATGACAACCTCGTCGACGACCACGCCTGGTTTTGCACACCTGAATGCAATCACCCAAAGACGGCTGAAGATTTTCTCAGATCCTCACCTTTCAAGGTTCCGAGCCCATCTGATGCTTCTGGGGTCTCTCCGCTTGGTGATAAATTCCAAAGAGATGTGAAATTGAAAAGAAGAGGGCTCACCAACTCTTCAGTTCATCCAATGAATAATAATTCAAGATTCAAGGAGGATAGTGAAAATCAGAACCCCAACCTATCAACCCCTCCAAATTATCAGGCTAAGGCCATGAAGGAAGCAATGAAATCAAGTACAGAGAAGAAGCAACCAACTGACACTGCTCCACAGAACAATGAGGTGCTCCCCAGGCTGAAAAGCACGCTGTCGGCAAGGAACTTATTCGCAGGAAAGGAGATTCTGAATCAGATCACTGACTTCTGCAGCGAATTGAAGAGAATGGCGACGGCGAGAGCAAAGGAGAGAGAGGAAGTGGAGAAAGGTGTGGTGAAAAACAAGGAAGAAGAGGTGAAGCAGGTGGAGTCTAATGGGGAGTTGAATGGGAGGGAAAGAGAGAGAATGCCATTGCTTGAATTGGGTAAAGGGAAAACAGAAACAATGGTGAAGGAGGAGGAGTGTAATGGCGAAGTTGGGGGTGAGGTGAATGGGAAGCAAAGGGAAAGAATGCCATTGATGGATGCGAATAAAGGGAAAACTGAAGGATTTGAGGGGAGAATTTTAAAGGAGGGAAAGAGGATTAAGAAAAGAGTTGACAATGCAGAGAACATTCCAGTCTCTTTAAATTTGGAGAGTGTAAAGCGTCAAGGGGGAGAGCACTTGTTGCAAATCCGGACCAACCCTCCCTCTCCTCAATGCTTTTCTGCTACAAGGCCCCCCAGCAAAATCACACCTTCAAAAGCTTCGAAGTCCAAACTGATGGAAAAGGGGGGAATCCTTCAAGGGCCGACCAACAAACAAGTGATCGCCACGGGTGATTCTAAACAAGTAATCACCAAGGATGATTCTAAACAAGTGATAACCAAGGATGATTCCACAGAAAAAGCCAAAAGCGTTTATATTGCTGATGGAAAAGAAGCAAGAACCTTGGACGTTTTCTGGTTTTTAAAACCTTGCACACTGTCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

415

Amino Acids

46.72

Weight (kDa)

8.95

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52110 AT3G52110 AT3G52110 AT3G52110
fragaria_vesca	FvH4_7g00980 FvH4_7g00980 FvH4_7g00980
malus_domestica	MD02G1313000.v1.1 MD07G1009400.v1.1
prunus_persica	Prupe.2G012400_v2.0.a1 Prupe.2G012400_v2.0.a1
pyrus_communis	pycom02g26260 pycom07g00840
rosa_chinensis	RchiOBHm_Chr1g0315881
rosa_laevigata	RLG00000030726
rosa_multiflora	Rmu_sc0012813.1_g000008 Rmu_ssc0000154.1_g000015
rosa_roxburghii	Rroxscaffold_4G00331350
rosa_rugosa	Rorug01G0006800
rosa_samantha	Rh1AG017500 Rh1BG010000 Rh1CG014800 Rh1DG010400
rosa_wichuraiana	Rw1G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	625
AasI	GACNNNNNNGTC	1 cut(s)	116
Acc36I	ACCTGC	2 cut(s)	16, 625
AccI	GTMKAC	2 cut(s)	120, 1241
AccIII	TCCGGA	1 cut(s)	948
AciI	CCGC	1 cut(s)	236
AclWI	GGATC	1 cut(s)	180
AcsI	RAATTY	3 cut(s)	248, 834, 901
AcuI	CTGAAG	3 cut(s)	192, 279, 837
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	131, 467
AluBI	AGCT	1 cut(s)	1019
AluI	AGCT	1 cut(s)	1019
Alw21I	GWGCWC	2 cut(s)	465, 936
Alw26I	GTCTC	2 cut(s)	235, 898
AlwI	GGATC	1 cut(s)	180
Aor13HI	TCCGGA	1 cut(s)	948
AoxI	GGCC	3 cut(s)	387, 989, 1061
ApeKI	GCWGC	1 cut(s)	543
ApoI	RAATTY	3 cut(s)	248, 834, 901
Asp700I	GAANNNNTTC	2 cut(s)	177, 500
AspS9I	GGNCC	3 cut(s)	951, 990, 1061
AsuII	TTCGAA	1 cut(s)	1022
AvaII	GGWCC	1 cut(s)	951
BanII	GRGCYC	2 cut(s)	212, 285
Bbv12I	GWGCWC	2 cut(s)	465, 936
BbvI	GCAGC	1 cut(s)	555
BccI	CCATC	4 cut(s)	220, 787, 1030, 1178
BceAI	ACGGC	2 cut(s)	183, 582
BciT130I	CCWGG	2 cut(s)	133, 469
BcoDI	GTCTC	2 cut(s)	235, 898
BfmI	CTRYAG	1 cut(s)	541
BfuAI	ACCTGC	2 cut(s)	16, 625
BisI	GCNGC	1 cut(s)	544
BlsI	GCNGC	1 cut(s)	545
Bme1390I	CCNGG	2 cut(s)	133, 469
Bme18I	GGWCC	1 cut(s)	951
BmgT120I	GGNCC	3 cut(s)	951, 990, 1061
BmiI	GGNNCC	3 cut(s)	6, 204, 992
BmrFI	CCNGG	2 cut(s)	133, 469
BmsI	GCATC	2 cut(s)	208, 787
Bpu10I	CCTNAGC	1 cut(s)	384
Bpu14I	TTCGAA	1 cut(s)	1022
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	5 cut(s)	467, 1086, 1113, 1140, 1203
BsaWI	WCCGGW	1 cut(s)	948
BsaXI	ACNNNNNCTCC	4 cut(s)	719, 749, 943, 973
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	890
Bse3DI	GCAATG	2 cut(s)	408, 683
BseAI	TCCGGA	1 cut(s)	948
BseBI	CCWGG	2 cut(s)	133, 469
BseDI	CCNNGG	5 cut(s)	467, 1086, 1113, 1140, 1203
BseGI	GGATG	4 cut(s)	301, 802, 1123, 1150
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	2 cut(s)	408, 683
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	890
BseRI	GAGGAG	3 cut(s)	743, 746, 957
BseXI	GCAGC	1 cut(s)	555
BseYI	CCCAGC	1 cut(s)	995
BshFI	GGCC	3 cut(s)	389, 991, 1063
BsiHKAI	GWGCWC	2 cut(s)	465, 936
BsiSI	CCGG	1 cut(s)	949
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	2 cut(s)	235, 898
BsmI	GAATGC	3 cut(s)	155, 684, 789
BsnI	GGCC	3 cut(s)	389, 991, 1063
Bso31I	GGTCTC	1 cut(s)	235
Bsp119I	TTCGAA	1 cut(s)	1022
Bsp1286I	GDGCHC	4 cut(s)	212, 285, 465, 936
Bsp13I	TCCGGA	1 cut(s)	948
Bsp143I	GATC	4 cut(s)	69, 185, 528, 1080
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	3 cut(s)	389, 991, 1063
BspCNI	CTCAG	1 cut(s)	195
BspEI	TCCGGA	1 cut(s)	948
BspLI	GGNNCC	3 cut(s)	6, 204, 992
BspMAI	CTGCAG	1 cut(s)	545
BspMI	ACCTGC	2 cut(s)	16, 625
BspPI	GGATC	1 cut(s)	180
BspT104I	TTCGAA	1 cut(s)	1022
BspTNI	GGTCTC	1 cut(s)	235
BsrDI	GCAATG	2 cut(s)	408, 683
BsrI	ACTGG	1 cut(s)	890
BssECI	CCNNGG	5 cut(s)	467, 1086, 1113, 1140, 1203
BssMI	GATC	4 cut(s)	69, 185, 528, 1080
BssT1I	CCWWGG	3 cut(s)	1113, 1140, 1203
Bst2UI	CCWGG	2 cut(s)	133, 469
Bst4CI	ACNGT	1 cut(s)	1239
Bst6I	CTCTTC	4 cut(s)	271, 298, 548, 618
BstAPI	GCANNNNNTGC	1 cut(s)	940
BstBI	TTCGAA	1 cut(s)	1022
BstC8I	GCNNGC	1 cut(s)	482
BstDEI	CTNAG	2 cut(s)	182, 384
BstDSI	CCRYGG	1 cut(s)	1086
BstF5I	GGATG	4 cut(s)	301, 802, 1123, 1150
BstKTI	GATC	4 cut(s)	72, 188, 531, 1083
BstMAI	GTCTC	2 cut(s)	235, 898
BstMBI	GATC	4 cut(s)	69, 185, 528, 1080
BstMWI	GCNNNNNNNGC	2 cut(s)	469, 940
BstNI	CCWGG	2 cut(s)	133, 469
BstSCI	CCNGG	2 cut(s)	131, 467
BstSFI	CTRYAG	1 cut(s)	541
BstV1I	GCAGC	1 cut(s)	555
BstX2I	RGATCY	1 cut(s)	185
BstXI	CCANNNNNNTGG	1 cut(s)	1036
BstYI	RGATCY	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	389, 991, 1063
BtgI	CCRYGG	1 cut(s)	1086
BtsCI	GGATG	4 cut(s)	301, 802, 1123, 1150
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	3 cut(s)	438, 531, 1235
BveI	ACCTGC	2 cut(s)	16, 625
Cac8I	GCNNGC	1 cut(s)	482
Cfr13I	GGNCC	3 cut(s)	951, 990, 1061
CseI	GACGC	1 cut(s)	908
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	1 cut(s)	391
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	2 cut(s)	182, 384
DpnI	GATC	4 cut(s)	71, 187, 530, 1082
DpnII	GATC	4 cut(s)	69, 185, 528, 1080
DraI	TTTAAA	3 cut(s)	840, 900, 1224
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
Eam1104I	CTCTTC	4 cut(s)	271, 298, 548, 618
EarI	CTCTTC	4 cut(s)	271, 298, 548, 618
Eco130I	CCWWGG	3 cut(s)	1113, 1140, 1203
Eco24I	GRGCYC	2 cut(s)	212, 285
Eco31I	GGTCTC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	951
Eco57I	CTGAAG	3 cut(s)	192, 279, 837
EcoO109I	RGGNCCY	1 cut(s)	990
EcoRII	CCWGG	2 cut(s)	131, 467
EcoT14I	CCWWGG	3 cut(s)	1113, 1140, 1203
EcoT38I	GRGCYC	2 cut(s)	212, 285
ErhI	CCWWGG	3 cut(s)	1113, 1140, 1203
FaeI	CATG	1 cut(s)	394
FaiI	YATR	2 cut(s)	392, 1176
FatI	CATG	1 cut(s)	390
FblI	GTMKAC	2 cut(s)	120, 1241
Fnu4HI	GCNGC	1 cut(s)	544
FokI	GGATG	4 cut(s)	288, 809, 1130, 1157
FriOI	GRGCYC	2 cut(s)	212, 285
Fsp4HI	GCNGC	1 cut(s)	544
GluI	GCNGC	1 cut(s)	544
GsaI	CCCAGC	1 cut(s)	999
HaeIII	GGCC	3 cut(s)	389, 991, 1063
HapII	CCGG	1 cut(s)	949
HgaI	GACGC	1 cut(s)	908
Hin1II	CATG	1 cut(s)	394
HincII	GTYRAC	2 cut(s)	121, 871
HindII	GTYRAC	2 cut(s)	121, 871
HindIII	AAGCTT	1 cut(s)	1017
HinfI	GANTC	8 cut(s)	324, 517, 523, 641, 1050, 1094, 1121, 1148
HpaII	CCGG	1 cut(s)	949
Hpy166II	GTNNAC	3 cut(s)	121, 871, 1242
Hpy188I	TCNGA	6 cut(s)	185, 207, 217, 348, 522, 528
Hpy188III	TCNNGA	3 cut(s)	97, 321, 949
Hpy8I	GTNNAC	3 cut(s)	121, 871, 1242
Hpy99I	CGWCG	3 cut(s)	122, 125, 568
HpyAV	CCTTC	5 cut(s)	388, 718, 812, 1020, 1064
HpyCH4III	ACNGT	1 cut(s)	1239
HpyCH4IV	ACGT	1 cut(s)	1209
HpyCH4V	TGCA	7 cut(s)	11, 141, 153, 543, 878, 943, 1233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	469, 940
HpyF3I	CTNAG	2 cut(s)	182, 384
HpySE526I	ACGT	1 cut(s)	1209
Hsp92II	CATG	1 cut(s)	394
Kpn2I	TCCGGA	1 cut(s)	948
Kzo9I	GATC	4 cut(s)	69, 185, 528, 1080
LmnI	GCTCC	3 cut(s)	82, 448, 468
Lsp1109I	GCAGC	1 cut(s)	555
LweI	GCATC	2 cut(s)	208, 787
MaeII	ACGT	1 cut(s)	1209
MalI	GATC	4 cut(s)	71, 187, 530, 1082
MboI	GATC	4 cut(s)	69, 185, 528, 1080
MboII	GAAGA	7 cut(s)	185, 285, 288, 433, 565, 632, 635
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	4 cut(s)	212, 285, 465, 936
MluCI	AATT	8 cut(s)	248, 266, 316, 373, 548, 692, 834, 901
MlyI	GAGTC	1 cut(s)	650
MroI	TCCGGA	1 cut(s)	948
MroXI	GAANNNNTTC	2 cut(s)	177, 500
MseI	TTAA	4 cut(s)	839, 858, 899, 1223
MslI	CAYNNNNRTG	1 cut(s)	148
MspI	CCGG	1 cut(s)	949
MspR9I	CCNGG	2 cut(s)	133, 469
Mva1269I	GAATGC	3 cut(s)	155, 684, 789
MvaI	CCWGG	2 cut(s)	133, 469
MwoI	GCNNNNNNNGC	2 cut(s)	469, 940
NdeII	GATC	4 cut(s)	69, 185, 528, 1080
NlaIII	CATG	1 cut(s)	394
NlaIV	GGNNCC	3 cut(s)	6, 204, 992
NspV	TTCGAA	1 cut(s)	1022
PaqCI	CACCTGC	1 cut(s)	625
PctI	GAATGC	3 cut(s)	155, 684, 789
PdmI	GAANNNNTTC	2 cut(s)	177, 500
PfeI	GAWTC	7 cut(s)	324, 517, 523, 1050, 1094, 1121, 1148
PkrI	GCNGC	1 cut(s)	545
PleI	GAGTC	1 cut(s)	649
PpsI	GAGTC	1 cut(s)	649
Psp6I	CCWGG	2 cut(s)	131, 467
PspFI	CCCAGC	1 cut(s)	995
PspGI	CCWGG	2 cut(s)	131, 467
PspN4I	GGNNCC	3 cut(s)	6, 204, 992
PspPI	GGNCC	3 cut(s)	951, 990, 1061
PstI	CTGCAG	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	185
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	1 cut(s)	148
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	4 cut(s)	839, 858, 899, 1223
SatI	GCNGC	1 cut(s)	544
Sau3AI	GATC	4 cut(s)	69, 185, 528, 1080
Sau96I	GGNCC	3 cut(s)	951, 990, 1061
SchI	GAGTC	1 cut(s)	650
ScrFI	CCNGG	2 cut(s)	133, 469
SduI	GDGCHC	4 cut(s)	212, 285, 465, 936
SfaNI	GCATC	2 cut(s)	208, 787
SfcI	CTRYAG	1 cut(s)	541
SfuI	TTCGAA	1 cut(s)	1022
SgrDI	CGTCGACG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	951
SmiMI	CAYNNNNRTG	1 cut(s)	148
Sse9I	AATT	8 cut(s)	248, 266, 316, 373, 548, 692, 834, 901
SsiI	CCGC	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	131, 467
StyI	CCWWGG	3 cut(s)	1113, 1140, 1203
TaaI	ACNGT	1 cut(s)	1239
TaiI	ACGT	1 cut(s)	1212
TaqI	TCGA	3 cut(s)	90, 120, 1022
TasI	AATT	8 cut(s)	248, 266, 316, 373, 548, 692, 834, 901
TatI	WGTACW	1 cut(s)	413
TfiI	GAWTC	7 cut(s)	324, 517, 523, 1050, 1094, 1121, 1148
Tru1I	TTAA	4 cut(s)	839, 858, 899, 1223
Tru9I	TTAA	4 cut(s)	839, 858, 899, 1223
TscAI	CASTG	3 cut(s)	445, 538, 1242
TseI	GCWGC	1 cut(s)	543
TspDTI	ATGAA	4 cut(s)	290, 323, 407, 419
TspRI	CASTG	3 cut(s)	445, 538, 1242
VpaK11BI	GGWCC	1 cut(s)	951
XapI	RAATTY	3 cut(s)	248, 834, 901
XmiI	GTMKAC	2 cut(s)	120, 1241
XmnI	GAANNNNTTC	2 cut(s)	177, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.