Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008075

Physical Location & Seq

Genomic Coordinates Forward (+)

1399701 .. 1403479

Gene Structure 3779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g00980.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGAGCCTGCAAAAATTGATTGGAAGAACTTGGAATGGAGATTTGTGGAGGACAAAGCCTACGAGCAGATCAACGCCCCCAAGTGGTTCGATTTCTTGAACCCCAATGACAACCTCCTCGACGACCACGCCTTCTTTTGCACTCCCGAATGCAACCACCCAAAGACCGCCGAAGACTTTCTTAGATCCTCATCACCTTACAAGGTTGCGAGCTCATCTGATGTTTCTGGTATCTCTCCACTTGGTGATAAAGTCCAAAGAGATGTGAAACTAAAAAGAAGAGGGCTCCCTAACTCATCAGTTCATCCCACCAATAATTCAAGATTCAAGGAGGATAGCGAAAACCAGAACCCCAACCTATCAACCCCTCCAAACTATCAAGCTAAGGCCATGAAAGAAGCAATCAAATCAAGTACAGAGAAGAAGCAACCAGTTGAGACTGCAACACAGAGCAATGAGGTGCTCCCCAGGCTGAAAAGCACGCTTTCGGCGAGAAACTTATTTGCAGGAAAGGACATTCTGAATCATATCACTGACTTCTGCAGCGAATTGAAGAGATTGGCGATGAACGCAAAGGAGAGGGAGGAAGTGGAGAAAGGTATAGTGAATAACAAAGAAGAGGAGGTGAAGAAGGTGGAGTCTAATGGTGAGGTTCTGGGTGAGTTGAATGGGAGGGAAAGAGAGAGAATGCCATTGCTTGAATTGGGTAAAGGGAAGTCAGAAAGAATGGTGAAGAAGGAGGAGTGTAAAGTTGAAGTTCTGGGTGAGGTGAATGGGAAGCAAAGAGAAAGAATGCCATTGCTTGATGCCAATAAAGGGAAAACTGAAGGAATTGAAGGAAGAATTATACAGGAGGGAAAGAGGATTAAGAAGAGAGTTGATAATGCAGAGAACATCCCAGTCTCTTTAAATTTGGAGAGTGTAAAGCGAAAAGGGGGGGAGGACTTGTTGCAAATCCGGACCAACCCTCCCTCTCCTCAATGCTTTTCTGCTGCAAGGCCCCCCAGCAAAATCACACCTTCAAAAGCCTCAAAGTCCAGACTAATGGAAAAGGGGGGAATCCTTCAAGGGCAGACCAACAAACAAGTGATCGCCATGGATGATTCTAAACAAGTGATCACCAAGGATGATTCCACAGAAAAAGCCAAGAGCGTCTGTATTGCTGATGGAAAAGAAGCAAGAACCTTGGACGTCTTTTGGTTTCTAAAACCTTGCACACTATCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

410

Amino Acids

45.99

Weight (kDa)

8.92

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52110 AT3G52110 AT3G52110 AT3G52110
fragaria_vesca	FvH4_7g00980 FvH4_7g00980 FvH4_7g00980
malus_domestica	MD02G1313000.v1.1 MD07G1009400.v1.1
prunus_persica	Prupe.2G012400_v2.0.a1 Prupe.2G012400_v2.0.a1
pyrus_communis	pycom02g26260 pycom07g00840
rosa_chinensis	RchiOBHm_Chr1g0315881
rosa_laevigata	RLG00000030726
rosa_multiflora	Rmu_sc0012813.1_g000008 Rmu_ssc0000154.1_g000015
rosa_roxburghii	Rroxscaffold_4G00331350
rosa_rugosa	Rorug01G0006800
rosa_samantha	Rh1AG017500 Rh1BG010000 Rh1CG014800 Rh1DG010400
rosa_wichuraiana	Rw1G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1194
AccIII	TCCGGA	1 cut(s)	957
AciI	CCGC	1 cut(s)	168
AclWI	GGATC	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	910
AcuI	CTGAAG	1 cut(s)	846
AcyI	GRCGYC	1 cut(s)	1191
AdeI	CACNNNGTG	1 cut(s)	245
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	2 cut(s)	84, 816
AjnI	CCWGG	1 cut(s)	467
AluBI	AGCT	2 cut(s)	213, 383
AluI	AGCT	2 cut(s)	213, 383
Alw21I	GWGCWC	2 cut(s)	215, 465
Alw26I	GTCTC	2 cut(s)	431, 907
AlwI	GGATC	1 cut(s)	180
Aor13HI	TCCGGA	1 cut(s)	957
AoxI	GGCC	2 cut(s)	387, 998
ApeKI	GCWGC	2 cut(s)	543, 992
ApoI	RAATTY	1 cut(s)	910
Asp700I	GAANNNNTTC	1 cut(s)	177
AspS9I	GGNCC	2 cut(s)	960, 999
AsuHPI	GGTGA	9 cut(s)	186, 257, 637, 659, 671, 742, 776, 781, 1111
AvaII	GGWCC	1 cut(s)	960
BanII	GRGCYC	2 cut(s)	215, 288
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	2 cut(s)	215, 465
BbvI	GCAGC	2 cut(s)	555, 979
BccI	CCATC	1 cut(s)	1160
BciT130I	CCWGG	1 cut(s)	469
BclI	TGATCA	1 cut(s)	1116
BcoDI	GTCTC	2 cut(s)	431, 907
BfmI	CTRYAG	1 cut(s)	541
BisI	GCNGC	2 cut(s)	544, 993
BlsI	GCNGC	2 cut(s)	545, 994
Bme1390I	CCNGG	1 cut(s)	469
Bme18I	GGWCC	1 cut(s)	960
BmgT120I	GGNCC	2 cut(s)	960, 999
BmiI	GGNNCC	3 cut(s)	6, 287, 1001
BmrFI	CCNGG	1 cut(s)	469
BmrI	ACTGGG	1 cut(s)	893
BmsI	GCATC	1 cut(s)	796
BmuI	ACTGGG	1 cut(s)	893
BpiI	GAAGAC	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	384
BsaBI	GATNNNNATC	1 cut(s)	190
BsaHI	GRCGYC	1 cut(s)	1191
BsaJI	CCNNGG	4 cut(s)	467, 1095, 1122, 1185
BsaWI	WCCGGW	1 cut(s)	957
BsaXI	ACNNNNNCTCC	4 cut(s)	932, 952, 962, 982
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 816
Bse1I	ACTGG	2 cut(s)	431, 899
Bse3DI	GCAATG	3 cut(s)	460, 692, 797
Bse8I	GATNNNNATC	1 cut(s)	190
BseAI	TCCGGA	1 cut(s)	957
BseBI	CCWGG	1 cut(s)	469
BseDI	CCNNGG	4 cut(s)	467, 1095, 1122, 1185
BseGI	GGATG	4 cut(s)	304, 894, 1105, 1132
BseJI	GATNNNNATC	1 cut(s)	190
BseLI	CCNNNNNNNGG	2 cut(s)	84, 816
BseMI	GCAATG	3 cut(s)	460, 692, 797
BseNI	ACTGG	2 cut(s)	431, 899
BseRI	GAGGAG	4 cut(s)	107, 635, 755, 966
BseXI	GCAGC	2 cut(s)	555, 979
BseYI	CCCAGC	1 cut(s)	1004
BshFI	GGCC	2 cut(s)	389, 1000
BsiHKAI	GWGCWC	2 cut(s)	215, 465
BsiSI	CCGG	1 cut(s)	958
BslI	CCNNNNNNNGG	2 cut(s)	84, 816
BsmAI	GTCTC	2 cut(s)	431, 907
BsmI	GAATGC	3 cut(s)	155, 693, 798
BsnI	GGCC	2 cut(s)	389, 1000
Bsp1286I	GDGCHC	3 cut(s)	215, 288, 465
Bsp13I	TCCGGA	1 cut(s)	957
Bsp143I	GATC	4 cut(s)	69, 185, 1089, 1116
Bsp19I	CCATGG	1 cut(s)	1095
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	2 cut(s)	389, 1000
BspEI	TCCGGA	1 cut(s)	957
BspLI	GGNNCC	3 cut(s)	6, 287, 1001
BspMAI	CTGCAG	1 cut(s)	545
BspPI	GGATC	1 cut(s)	180
BsrDI	GCAATG	3 cut(s)	460, 692, 797
BsrI	ACTGG	2 cut(s)	431, 899
BssECI	CCNNGG	4 cut(s)	467, 1095, 1122, 1185
BssMI	GATC	4 cut(s)	69, 185, 1089, 1116
BssNI	GRCGYC	1 cut(s)	1191
BssT1I	CCWWGG	3 cut(s)	1095, 1122, 1185
Bst2UI	CCWGG	1 cut(s)	469
Bst6I	CTCTTC	4 cut(s)	274, 548, 612, 866
BstACI	GRCGYC	1 cut(s)	1191
BstC8I	GCNNGC	3 cut(s)	9, 211, 482
BstDEI	CTNAG	2 cut(s)	182, 384
BstDSI	CCRYGG	1 cut(s)	1095
BstF5I	GGATG	4 cut(s)	304, 894, 1105, 1132
BstKTI	GATC	4 cut(s)	72, 188, 1092, 1119
BstMAI	GTCTC	2 cut(s)	431, 907
BstMBI	GATC	4 cut(s)	69, 185, 1089, 1116
BstMWI	GCNNNNNNNGC	2 cut(s)	469, 569
BstNI	CCWGG	1 cut(s)	469
BstSCI	CCNGG	1 cut(s)	467
BstSFI	CTRYAG	1 cut(s)	541
BstV1I	GCAGC	2 cut(s)	555, 979
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	185
BstXI	CCANNNNNNTGG	1 cut(s)	1045
BstYI	RGATCY	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	389, 1000
BtgI	CCRYGG	1 cut(s)	1095
BtgZI	GCGATG	1 cut(s)	578
BtsCI	GGATG	4 cut(s)	304, 894, 1105, 1132
BtsIMutI	CAGTG	1 cut(s)	531
Cac8I	GCNNGC	3 cut(s)	9, 211, 482
Cfr13I	GGNCC	2 cut(s)	960, 999
CseI	GACGC	1 cut(s)	1141
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	2 cut(s)	391, 1096
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	2 cut(s)	182, 384
DpnI	GATC	4 cut(s)	71, 187, 1091, 1118
DpnII	GATC	4 cut(s)	69, 185, 1089, 1116
DraI	TTTAAA	1 cut(s)	909
DraIII	CACNNNGTG	1 cut(s)	245
Eam1104I	CTCTTC	4 cut(s)	274, 548, 612, 866
EarI	CTCTTC	4 cut(s)	274, 548, 612, 866
Ecl136II	GAGCTC	1 cut(s)	213
Eco130I	CCWWGG	3 cut(s)	1095, 1122, 1185
Eco24I	GRGCYC	2 cut(s)	215, 288
Eco47I	GGWCC	1 cut(s)	960
Eco53kI	GAGCTC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	846
EcoICRI	GAGCTC	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	999
EcoRII	CCWGG	1 cut(s)	467
EcoT14I	CCWWGG	3 cut(s)	1095, 1122, 1185
EcoT38I	GRGCYC	2 cut(s)	215, 288
ErhI	CCWWGG	3 cut(s)	1095, 1122, 1185
FaeI	CATG	2 cut(s)	394, 1099
FaiI	YATR	5 cut(s)	392, 528, 602, 848, 1097
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FatI	CATG	2 cut(s)	390, 1095
FbaI	TGATCA	1 cut(s)	1116
Fnu4HI	GCNGC	2 cut(s)	544, 993
FokI	GGATG	4 cut(s)	291, 881, 1112, 1139
FriOI	GRGCYC	2 cut(s)	215, 288
Fsp4HI	GCNGC	2 cut(s)	544, 993
GluI	GCNGC	2 cut(s)	544, 993
GsaI	CCCAGC	1 cut(s)	1008
HaeIII	GGCC	2 cut(s)	389, 1000
HapII	CCGG	1 cut(s)	958
HgaI	GACGC	1 cut(s)	1141
Hin1I	GRCGYC	1 cut(s)	1191
Hin1II	CATG	2 cut(s)	394, 1099
HinfI	GANTC	6 cut(s)	324, 523, 638, 1059, 1103, 1130
HpaII	CCGG	1 cut(s)	958
HphI	GGTGA	9 cut(s)	186, 257, 637, 659, 671, 742, 776, 781, 1111
Hpy188I	TCNGA	3 cut(s)	220, 522, 721
Hpy188III	TCNNGA	5 cut(s)	97, 146, 321, 958, 1038
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	7 cut(s)	142, 625, 730, 821, 830, 1029, 1073
HpyCH4IV	ACGT	1 cut(s)	1191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	469, 569
HpyF3I	CTNAG	2 cut(s)	182, 384
HpySE526I	ACGT	1 cut(s)	1191
Hsp92I	GRCGYC	1 cut(s)	1191
Hsp92II	CATG	2 cut(s)	394, 1099
Kpn2I	TCCGGA	1 cut(s)	957
Ksp22I	TGATCA	1 cut(s)	1116
Kzo9I	GATC	4 cut(s)	69, 185, 1089, 1116
LmnI	GCTCC	3 cut(s)	4, 291, 468
Lsp1109I	GCAGC	2 cut(s)	555, 979
LweI	GCATC	1 cut(s)	796
MaeII	ACGT	1 cut(s)	1191
MalI	GATC	4 cut(s)	71, 187, 1091, 1118
MboI	GATC	4 cut(s)	69, 185, 1089, 1116
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	3 cut(s)	215, 288, 465
MluCI	AATT	7 cut(s)	15, 316, 548, 701, 831, 843, 910
MlyI	GAGTC	1 cut(s)	647
MroI	TCCGGA	1 cut(s)	957
MroXI	GAANNNNTTC	1 cut(s)	177
MseI	TTAA	2 cut(s)	867, 908
MspI	CCGG	1 cut(s)	958
MspR9I	CCNGG	1 cut(s)	469
Mva1269I	GAATGC	3 cut(s)	155, 693, 798
MvaI	CCWGG	1 cut(s)	469
MwoI	GCNNNNNNNGC	2 cut(s)	469, 569
NcoI	CCATGG	1 cut(s)	1095
NdeII	GATC	4 cut(s)	69, 185, 1089, 1116
NlaIII	CATG	2 cut(s)	394, 1099
NlaIV	GGNNCC	3 cut(s)	6, 287, 1001
PcsI	WCGNNNNNNNCGW	1 cut(s)	488
PctI	GAATGC	3 cut(s)	155, 693, 798
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	5 cut(s)	324, 523, 1059, 1103, 1130
PkrI	GCNGC	2 cut(s)	545, 994
PleI	GAGTC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	646
Psp124BI	GAGCTC	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	467
PspFI	CCCAGC	1 cut(s)	1004
PspGI	CCWGG	1 cut(s)	467
PspN4I	GGNNCC	3 cut(s)	6, 287, 1001
PspPI	GGNCC	2 cut(s)	960, 999
PstI	CTGCAG	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	185
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
SacI	GAGCTC	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	867, 908
SatI	GCNGC	2 cut(s)	544, 993
Sau3AI	GATC	4 cut(s)	69, 185, 1089, 1116
Sau96I	GGNCC	2 cut(s)	960, 999
SchI	GAGTC	1 cut(s)	647
ScrFI	CCNGG	1 cut(s)	469
SduI	GDGCHC	3 cut(s)	215, 288, 465
SfaNI	GCATC	1 cut(s)	796
SfcI	CTRYAG	1 cut(s)	541
SinI	GGWCC	1 cut(s)	960
Sse9I	AATT	7 cut(s)	15, 316, 548, 701, 831, 843, 910
SsiI	CCGC	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	467
StyI	CCWWGG	3 cut(s)	1095, 1122, 1185
TaiI	ACGT	1 cut(s)	1194
TaqI	TCGA	2 cut(s)	90, 120
TasI	AATT	7 cut(s)	15, 316, 548, 701, 831, 843, 910
TatI	WGTACW	1 cut(s)	413
TfiI	GAWTC	5 cut(s)	324, 523, 1059, 1103, 1130
Tru1I	TTAA	2 cut(s)	867, 908
Tru9I	TTAA	2 cut(s)	867, 908
TscAI	CASTG	1 cut(s)	538
TseI	GCWGC	2 cut(s)	543, 992
TspDTI	ATGAA	3 cut(s)	293, 407, 581
TspRI	CASTG	1 cut(s)	538
VpaK11BI	GGWCC	1 cut(s)	960
XapI	RAATTY	1 cut(s)	910
XmnI	GAANNNNTTC	1 cut(s)	177
ZraI	GACGTC	1 cut(s)	1192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.