Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008075

Physical Location & Seq

Genomic Coordinates Reverse (-)

24088995 .. 24091471

Gene Structure 2477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGAACCGGCAAAAATCGATTGGAAACGTTTAGAGCGGAGATTCACAGAGGACAAATACTACGAGCAAATAAACGCCCCCAAGTGGTTCGATTTCTTGAACCCCAATGACAACTCCGTCGACGATCAGGCCTGGTTCTGTCGCCCCGAATGCAAGCATCCGAAGACGGCTGAAGATTTTCTCAAGTCATCACCTCCCAAGGTTCCGAGGTCAGCAGTCGTTTCTGAAGTTTCTCCACTTGGTGATAAAATCCAGAGAGATGTGAAGTTAAAGAGAAGGGGATTGAAGCAATCTTCGATTTACCCGACTAATAACTCAAGATTCAAGGAAGATGGTGAAAATCAGAACCCCAATTTATCAACCCCTCCAATGAACCAAGCTAAGGCCATGAAGGCAACAATCAAATCAAGCACAGCGAAGAAGCAACCAATTGAGAGCACACCGCCAAACAATGAGGTGCTTCCAAAGCTGAGAAGCACGCTGTCTGCAAGGAATTTATTTGCGGGGAGGGATATTCTGAATCAGATTACAGACTTCTGTTCTGAATTGAAGAGAATGGCGATGAGAGCGAGGGAGAGAGAGGATGTGGAGAATTCAGATGTGAGGAAAATCCCAGCGGGTTTGAAGGAAGAGGTAGTGAAGAATGAGGAGTGTAACAGTGAGGTTTTAAGGGAGTTGAAAGGGAGGGAAACAGAGAGAATGCCACAGCTTGAGGTGGGTAATGGAAAAACTGAGAGGCAAACTGAGACAACTCCATTGCTGGAGGTTAATAAAGGGAAAAATGAGAGGCAAGCGGAGAGAACGCCATTGCATGGGGTAAGCAAAACAAACACTGAAGGAATGGAGGGGAGCAATACCGAGGAGAAGCCGACGAGGAAGAAAAGAGATGATGAGGCAGAGAACGTCCCAATCCCTCTAAGTTTAGAGAATGTCAAGTGCAAAGGAGGCGAGAGCTTGTTGCAAATCCGCACCAACCCTCCCTCTCCTCAATGCTTTTCTGCCACAACGCCCTCCAGCAACATCACACCTTCAAAAGCTTCCAAGTCCAAGCTGATGGAACGGGGAATCCTTGGAGAGGTAGAGCAGAATAAAAAGGTGGTGAGCAAGGAGGATTCCACAGAGAAAGGTAAACCTGCCTGTATAGTCGATGGAAGAGAAGCAAGAGCGTTGGATGTTTTCTGGTTTTTAAAACCTTGCACAACACTTTCCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

405

Amino Acids

45.6

Weight (kDa)

8.99

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52110 AT3G52110 AT3G52110 AT3G52110
fragaria_vesca	FvH4_7g00980 FvH4_7g00980 FvH4_7g00980
malus_domestica	MD02G1313000.v1.1 MD07G1009400.v1.1
prunus_persica	Prupe.2G012400_v2.0.a1 Prupe.2G012400_v2.0.a1
pyrus_communis	pycom02g26260 pycom07g00840
rosa_chinensis	RchiOBHm_Chr1g0315881
rosa_laevigata	RLG00000030726
rosa_multiflora	Rmu_sc0012813.1_g000008 Rmu_ssc0000154.1_g000015
rosa_roxburghii	Rroxscaffold_4G00331350
rosa_rugosa	Rorug01G0006800
rosa_samantha	Rh1AG017500 Rh1BG010000 Rh1CG014800 Rh1DG010400
rosa_wichuraiana	Rw1G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
Acc36I	ACCTGC	1 cut(s)	1141
AccB7I	CCANNNNNTGG	1 cut(s)	812
AccBSI	CCGCTC	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	6 cut(s)	37, 443, 503, 617, 794, 967
AclI	AACGTT	1 cut(s)	28
AcsI	RAATTY	2 cut(s)	493, 592
AcuI	CTGAAG	3 cut(s)	192, 246, 855
AdeI	CACNNNGTG	1 cut(s)	242
AfiI	CCNNNNNNNGG	4 cut(s)	84, 382, 812, 1075
AgsI	TTSAA	7 cut(s)	100, 286, 325, 550, 625, 679, 1032
AjnI	CCWGG	1 cut(s)	131
AloI	GAACNNNNNNTCC	2 cut(s)	1050, 1082
AluBI	AGCT	6 cut(s)	380, 469, 709, 954, 1037, 1051
AluI	AGCT	6 cut(s)	380, 469, 709, 954, 1037, 1051
Alw21I	GWGCWC	1 cut(s)	440
Alw26I	GTCTC	1 cut(s)	740
AoxI	GGCC	2 cut(s)	129, 384
ApoI	RAATTY	2 cut(s)	493, 592
Asp700I	GAANNNNTTC	1 cut(s)	177
AsuHPI	GGTGA	4 cut(s)	183, 254, 347, 1111
BbsI	GAAGAC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	440
BccI	CCATC	3 cut(s)	326, 1048, 1142
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	740
BfuAI	ACCTGC	1 cut(s)	1141
BglI	GCCNNNNNGGC	1 cut(s)	392
Bme1390I	CCNGG	1 cut(s)	133
BmiI	GGNNCC	2 cut(s)	6, 204
BmrFI	CCNGG	1 cut(s)	133
BmsI	GCATC	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	170
BpmI	CTGGAG	2 cut(s)	782, 997
Bpu10I	CCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	3 cut(s)	167, 301, 731
Bsa29I	ATCGAT	1 cut(s)	18
BsaJI	CCNNGG	4 cut(s)	198, 206, 858, 1069
BsaXI	ACNNNNNCTCC	2 cut(s)	961, 991
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 382, 812, 1075
Bse118I	RCCGGY	1 cut(s)	7
Bse3DI	GCAATG	2 cut(s)	755, 806
BseBI	CCWGG	1 cut(s)	133
BseCI	ATCGAT	1 cut(s)	18
BseDI	CCNNGG	4 cut(s)	198, 206, 858, 1069
BseGI	GGATG	3 cut(s)	157, 589, 1177
BseLI	CCNNNNNNNGG	4 cut(s)	84, 382, 812, 1075
BseMI	GCAATG	2 cut(s)	755, 806
BseMII	CTCAG	3 cut(s)	461, 723, 735
BseRI	GAGGAG	3 cut(s)	662, 875, 975
BseYI	CCCAGC	1 cut(s)	613
BshFI	GGCC	2 cut(s)	131, 386
BshVI	ATCGAT	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	440
BsiSI	CCGG	2 cut(s)	8, 1209
BslFI	GGGAC	1 cut(s)	890
BslI	CCNNNNNNNGG	4 cut(s)	84, 382, 812, 1075
BsmAI	GTCTC	1 cut(s)	740
BsmFI	GGGAC	1 cut(s)	890
BsmI	GAATGC	2 cut(s)	155, 705
BsnI	GGCC	2 cut(s)	131, 386
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	6 cut(s)	37, 443, 503, 617, 794, 967
BspANI	GGCC	2 cut(s)	131, 386
BspCNI	CTCAG	3 cut(s)	462, 724, 736
BspDI	ATCGAT	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	6, 204
BspMI	ACCTGC	1 cut(s)	1141
BsrBI	CCGCTC	1 cut(s)	37
BsrDI	GCAATG	2 cut(s)	755, 806
BsrFI	RCCGGY	1 cut(s)	7
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	4 cut(s)	198, 206, 858, 1069
BssMI	GATC	1 cut(s)	124
BssT1I	CCWWGG	2 cut(s)	198, 1069
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	659
Bst6I	CTCTTC	3 cut(s)	545, 624, 1147
BstC8I	GCNNGC	3 cut(s)	155, 479, 792
BstDEI	CTNAG	5 cut(s)	381, 470, 732, 744, 917
BstENI	CCTNNNNNAGG	1 cut(s)	1073
BstF5I	GGATG	3 cut(s)	157, 589, 1177
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	740
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	5 cut(s)	150, 392, 466, 566, 945
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	170
BstXI	CCANNNNNNTGG	1 cut(s)	1054
Bsu15I	ATCGAT	1 cut(s)	18
BsuRI	GGCC	2 cut(s)	131, 386
BsuTUI	ATCGAT	1 cut(s)	18
BtgZI	GCGATG	1 cut(s)	575
BtsCI	GGATG	3 cut(s)	157, 589, 1177
BtsIMutI	CAGTG	2 cut(s)	664, 831
BveI	ACCTGC	1 cut(s)	1141
Cac8I	GCNNGC	3 cut(s)	155, 479, 792
Cfr10I	RCCGGY	1 cut(s)	7
ClaI	ATCGAT	1 cut(s)	18
CviAII	CATG	2 cut(s)	388, 812
DdeI	CTNAG	5 cut(s)	381, 470, 732, 744, 917
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
DraI	TTTAAA	1 cut(s)	1188
DraIII	CACNNNGTG	1 cut(s)	242
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
Eam1104I	CTCTTC	3 cut(s)	545, 624, 1147
EarI	CTCTTC	3 cut(s)	545, 624, 1147
Eco130I	CCWWGG	2 cut(s)	198, 1069
Eco147I	AGGCCT	1 cut(s)	131
Eco57I	CTGAAG	3 cut(s)	192, 246, 855
EcoNI	CCTNNNNNAGG	1 cut(s)	1073
EcoRI	GAATTC	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	2 cut(s)	198, 1069
ErhI	CCWWGG	2 cut(s)	198, 1069
FaeI	CATG	2 cut(s)	391, 815
FaiI	YATR	3 cut(s)	389, 813, 1142
FaqI	GGGAC	1 cut(s)	890
FatI	CATG	2 cut(s)	387, 811
FauI	CCCGC	2 cut(s)	496, 610
FblI	GTMKAC	1 cut(s)	120
FokI	GGATG	3 cut(s)	144, 596, 1184
GsaI	CCCAGC	1 cut(s)	617
GsuI	CTGGAG	2 cut(s)	782, 997
HaeIII	GGCC	2 cut(s)	131, 386
HapII	CCGG	2 cut(s)	8, 1209
Hin1II	CATG	2 cut(s)	391, 815
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	1035
HinfI	GANTC	5 cut(s)	42, 321, 520, 1065, 1112
HpaII	CCGG	2 cut(s)	8, 1209
HphI	GGTGA	4 cut(s)	183, 254, 347, 1111
Hpy166II	GTNNAC	2 cut(s)	121, 1130
Hpy188I	TCNGA	8 cut(s)	162, 207, 226, 345, 519, 525, 544, 598
Hpy188III	TCNNGA	3 cut(s)	97, 253, 318
Hpy8I	GTNNAC	2 cut(s)	121, 1130
Hpy99I	CGWCG	3 cut(s)	122, 125, 874
HpyAV	CCTTC	5 cut(s)	270, 385, 619, 830, 1038
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4IV	ACGT	2 cut(s)	28, 903
HpyCH4V	TGCA	6 cut(s)	153, 488, 811, 939, 961, 1197
HpyF10VI	GCNNNNNNNGC	5 cut(s)	150, 392, 466, 566, 945
HpyF3I	CTNAG	5 cut(s)	381, 470, 732, 744, 917
HpySE526I	ACGT	2 cut(s)	28, 903
Hsp92II	CATG	2 cut(s)	391, 815
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	849
LweI	GCATC	1 cut(s)	166
MaeII	ACGT	2 cut(s)	28, 903
MaeIII	GTNAC	1 cut(s)	653
MalI	GATC	1 cut(s)	126
MbiI	CCGCTC	1 cut(s)	37
MboI	GATC	1 cut(s)	124
MfeI	CAATTG	1 cut(s)	429
MhlI	GDGCHC	1 cut(s)	440
MluCI	AATT	5 cut(s)	352, 429, 493, 545, 592
MmeI	TCCRAC	1 cut(s)	1149
MroXI	GAANNNNTTC	1 cut(s)	177
MseI	TTAA	4 cut(s)	269, 668, 768, 1187
MspA1I	CMGCKG	1 cut(s)	617
MspI	CCGG	2 cut(s)	8, 1209
MspR9I	CCNGG	1 cut(s)	133
MunI	CAATTG	1 cut(s)	429
Mva1269I	GAATGC	2 cut(s)	155, 705
MvaI	CCWGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	5 cut(s)	150, 392, 466, 566, 945
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	391, 815
NlaIV	GGNNCC	2 cut(s)	6, 204
PceI	AGGCCT	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PctI	GAATGC	2 cut(s)	155, 705
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	5 cut(s)	42, 321, 520, 1065, 1112
PflMI	CCANNNNNTGG	1 cut(s)	812
Psp1406I	AACGTT	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	131
PspFI	CCCAGC	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	6, 204
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	4 cut(s)	269, 668, 768, 1187
Sau3AI	GATC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	440
SfaNI	GCATC	1 cut(s)	166
SgrDI	CGTCGACG	1 cut(s)	119
SmlI	CTYRAG	3 cut(s)	182, 316, 710
SmoI	CTYRAG	3 cut(s)	182, 316, 710
Sse9I	AATT	5 cut(s)	352, 429, 493, 545, 592
SseBI	AGGCCT	1 cut(s)	131
SsiI	CCGC	6 cut(s)	37, 443, 503, 617, 794, 967
StuI	AGGCCT	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	131
StyI	CCWWGG	2 cut(s)	198, 1069
TaaI	ACNGT	1 cut(s)	659
TaiI	ACGT	2 cut(s)	31, 906
TaqI	TCGA	5 cut(s)	18, 90, 120, 296, 1146
TasI	AATT	5 cut(s)	352, 429, 493, 545, 592
TfiI	GAWTC	5 cut(s)	42, 321, 520, 1065, 1112
Tru1I	TTAA	4 cut(s)	269, 668, 768, 1187
Tru9I	TTAA	4 cut(s)	269, 668, 768, 1187
TscAI	CASTG	2 cut(s)	664, 838
TspDTI	ATGAA	2 cut(s)	386, 404
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	2 cut(s)	664, 838
Van91I	CCANNNNNTGG	1 cut(s)	812
XagI	CCTNNNNNAGG	1 cut(s)	1073
XapI	RAATTY	2 cut(s)	493, 592
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.