Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008075

Physical Location & Seq

Genomic Coordinates Reverse (-)

36861179 .. 36864103

Gene Structure 2925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1313000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGAACCGGCAAAAATCGATTGGAAAAGTTTGGAGTGGAGATTCACAGAGGACAAATACTACGAGCAAATAAACGCCCCCAAGTGGTTCGATTTCTTGAACCCCAATGACAACTCCGTCGACGATCAGACCTGGTTCTGCCGCCCCGAATGCAAGCATCCGAAGACGGCTGAAGATTTTCTCAAGTCATCACCTCCCAAGGTTCCGAGATCAGCTGTTGTTTCTGAAGTTTCTCCACTTGGTGATAAAATCCAGAGAGATGTGAGGTTAAAGAGAAGGGGATTGAAGCAATCTTCGATTTACCCGACTAATAACTCAAGATTCAAGGAAGATGGTGAAAATCAGAACCCCAATTTATCAACCCCTCCAATGAACCAAGCTAAGGCCATGAAGGCAACAATCAAATCAAGCACAGAGAAGAAGCAACCAATTGAGAGCACACCGCCAAACAATGAGGTGCTTCCGAAGCTGAGAAGCACGCTGTCTGCAACGAATTTATTTGCGGGGAGGGACATTCTGAATCAGATTACAGACTTCTGTTCTGAATTGAAGAGAATGGCGATGAGAGCGAGGGAGAGAGAGGATGTGGAGAATTCGGATGTGAGGAAAAGCCCAGCGGGTTTGAAGGAAGAGGTAGTGAAGAATGAGGAGTGTAACAGTGAGGTTTTAAGGGAGTTGAAAGGGAGGGAAACAGAGAGAATGCCACTGCTTGAGGTGGGTAATGGAAAAACTGAGAGGCAAACTGAGACAACTCCATTGCTGGAGCTTAATATAGTGAAAAATGAGAGGCAAGCGGAGAGAACGCCATTGCATGGGGTAAGCAAAACAAACGCTGAAGGAATGGAGGGGAGCAATACCGAGGAGAAGCCGACGAGGAAGAAAAGAGATGATGAGACAGAGAACGTCCCATTCCCTCTAAGTTTAGCGAATGTCAAGCGCAAAGGAGGCGAGAGCTTGTTGCAAATCCGCACCAACCCTCCCTCTCCTCAATGCTTTTCTGCCACAAGGCCCTCCAGCAACATCACACCTTCAAAAGCTTCCAAGTCTAAGCTGATGGAACGGGGAATCCTTGGAGAGGAAGAGCAGAATAAAAAGGTGGTGAGCAAGGAGGATTCCACAGAGAAAGGTAAACCTGCCTGTATAGTCGATGGAAGAGAAGCAAGAGCGTTGGACGTTTTCTGGTTTTTAAAACCTTGCACAACACTTTCCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

405

Amino Acids

45.76

Weight (kDa)

8.77

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52110 AT3G52110 AT3G52110 AT3G52110
fragaria_vesca	FvH4_7g00980 FvH4_7g00980 FvH4_7g00980
malus_domestica	MD02G1313000.v1.1 MD07G1009400.v1.1
prunus_persica	Prupe.2G012400_v2.0.a1 Prupe.2G012400_v2.0.a1
pyrus_communis	pycom02g26260 pycom07g00840
rosa_chinensis	RchiOBHm_Chr1g0315881
rosa_laevigata	RLG00000030726
rosa_multiflora	Rmu_sc0012813.1_g000008 Rmu_ssc0000154.1_g000015
rosa_roxburghii	Rroxscaffold_4G00331350
rosa_rugosa	Rorug01G0006800
rosa_samantha	Rh1AG017500 Rh1BG010000 Rh1CG014800 Rh1DG010400
rosa_wichuraiana	Rw1G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
Acc36I	ACCTGC	1 cut(s)	1141
AccB7I	CCANNNNNTGG	1 cut(s)	812
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	6 cut(s)	142, 443, 503, 617, 794, 967
AcsI	RAATTY	2 cut(s)	493, 592
AcuI	CTGAAG	3 cut(s)	192, 246, 855
AdeI	CACNNNGTG	1 cut(s)	242
AfiI	CCNNNNNNNGG	4 cut(s)	84, 382, 812, 1075
AgsI	TTSAA	7 cut(s)	100, 286, 325, 550, 625, 679, 1032
AjnI	CCWGG	1 cut(s)	131
AloI	GAACNNNNNNTCC	2 cut(s)	1050, 1082
AluBI	AGCT	8 cut(s)	215, 380, 469, 766, 954, 1037, 1051, 1212
AluI	AGCT	8 cut(s)	215, 380, 469, 766, 954, 1037, 1051, 1212
Alw21I	GWGCWC	1 cut(s)	440
Alw26I	GTCTC	2 cut(s)	740, 887
AoxI	GGCC	2 cut(s)	384, 1007
ApoI	RAATTY	2 cut(s)	493, 592
Asp700I	GAANNNNTTC	1 cut(s)	177
AspLEI	GCGC	1 cut(s)	939
AspS9I	GGNCC	1 cut(s)	1008
AsuHPI	GGTGA	4 cut(s)	183, 254, 347, 1111
BbsI	GAAGAC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	440
BccI	CCATC	3 cut(s)	326, 1048, 1142
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	1 cut(s)	133
BcoDI	GTCTC	2 cut(s)	740, 887
BfuAI	ACCTGC	1 cut(s)	1141
BglI	GCCNNNNNGGC	1 cut(s)	392
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	1008
BmiI	GGNNCC	2 cut(s)	6, 204
BmrFI	CCNGG	1 cut(s)	133
BmsI	GCATC	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	170
BpmI	CTGGAG	2 cut(s)	782, 997
Bpu10I	CCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	3 cut(s)	167, 301, 731
Bsa29I	ATCGAT	1 cut(s)	18
BsaJI	CCNNGG	3 cut(s)	198, 858, 1069
BsaXI	ACNNNNNCTCC	2 cut(s)	961, 991
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 382, 812, 1075
Bse118I	RCCGGY	1 cut(s)	7
Bse3DI	GCAATG	2 cut(s)	755, 806
BseBI	CCWGG	1 cut(s)	133
BseCI	ATCGAT	1 cut(s)	18
BseDI	CCNNGG	3 cut(s)	198, 858, 1069
BseGI	GGATG	3 cut(s)	157, 589, 604
BseLI	CCNNNNNNNGG	4 cut(s)	84, 382, 812, 1075
BseMI	GCAATG	2 cut(s)	755, 806
BseMII	CTCAG	3 cut(s)	461, 723, 735
BseRI	GAGGAG	3 cut(s)	662, 875, 975
BseYI	CCCAGC	1 cut(s)	613
BshFI	GGCC	2 cut(s)	386, 1009
BshVI	ATCGAT	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	440
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	2 cut(s)	524, 890
BslI	CCNNNNNNNGG	4 cut(s)	84, 382, 812, 1075
BsmAI	GTCTC	2 cut(s)	740, 887
BsmFI	GGGAC	2 cut(s)	524, 890
BsmI	GAATGC	2 cut(s)	155, 705
BsnI	GGCC	2 cut(s)	386, 1009
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp143I	GATC	2 cut(s)	124, 209
BspACI	CCGC	6 cut(s)	142, 443, 503, 617, 794, 967
BspANI	GGCC	2 cut(s)	386, 1009
BspCNI	CTCAG	3 cut(s)	462, 724, 736
BspDI	ATCGAT	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	6, 204
BspMI	ACCTGC	1 cut(s)	1141
BspQI	GCTCTTC	1 cut(s)	1074
BsrDI	GCAATG	2 cut(s)	755, 806
BsrFI	RCCGGY	1 cut(s)	7
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	3 cut(s)	198, 858, 1069
BssMI	GATC	2 cut(s)	124, 209
BssT1I	CCWWGG	2 cut(s)	198, 1069
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	659
Bst6I	CTCTTC	4 cut(s)	545, 624, 1074, 1147
BstC8I	GCNNGC	3 cut(s)	155, 479, 792
BstDEI	CTNAG	6 cut(s)	381, 470, 732, 744, 917, 1047
BstENI	CCTNNNNNAGG	1 cut(s)	1073
BstF5I	GGATG	3 cut(s)	157, 589, 604
BstHHI	GCGC	1 cut(s)	939
BstKTI	GATC	2 cut(s)	127, 212
BstMAI	GTCTC	2 cut(s)	740, 887
BstMBI	GATC	2 cut(s)	124, 209
BstMWI	GCNNNNNNNGC	5 cut(s)	150, 392, 466, 566, 945
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	170
Bsu15I	ATCGAT	1 cut(s)	18
BsuRI	GGCC	2 cut(s)	386, 1009
BsuTUI	ATCGAT	1 cut(s)	18
BtgZI	GCGATG	1 cut(s)	575
BtsCI	GGATG	3 cut(s)	157, 589, 604
BtsI	GCAGTG	1 cut(s)	704
BtsIMutI	CAGTG	2 cut(s)	664, 704
BveI	ACCTGC	1 cut(s)	1141
Cac8I	GCNNGC	3 cut(s)	155, 479, 792
CfoI	GCGC	1 cut(s)	939
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	1008
ClaI	ATCGAT	1 cut(s)	18
CsiI	ACCWGGT	1 cut(s)	131
CviAII	CATG	2 cut(s)	388, 812
DdeI	CTNAG	6 cut(s)	381, 470, 732, 744, 917, 1047
DpnI	GATC	2 cut(s)	126, 211
DpnII	GATC	2 cut(s)	124, 209
DraI	TTTAAA	1 cut(s)	1188
DraIII	CACNNNGTG	1 cut(s)	242
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
Eam1104I	CTCTTC	4 cut(s)	545, 624, 1074, 1147
EarI	CTCTTC	4 cut(s)	545, 624, 1074, 1147
Eco130I	CCWWGG	2 cut(s)	198, 1069
Eco57I	CTGAAG	3 cut(s)	192, 246, 855
EcoNI	CCTNNNNNAGG	1 cut(s)	1073
EcoO109I	RGGNCCY	1 cut(s)	1008
EcoRI	GAATTC	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	2 cut(s)	198, 1069
ErhI	CCWWGG	2 cut(s)	198, 1069
FaeI	CATG	2 cut(s)	391, 815
FaiI	YATR	4 cut(s)	389, 773, 813, 1142
FaqI	GGGAC	2 cut(s)	524, 890
FatI	CATG	2 cut(s)	387, 811
FauI	CCCGC	2 cut(s)	496, 610
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	3 cut(s)	144, 596, 611
Fsp4HI	GCNGC	1 cut(s)	142
GlaI	GCGC	1 cut(s)	938
GluI	GCNGC	1 cut(s)	142
GsaI	CCCAGC	1 cut(s)	617
GsuI	CTGGAG	2 cut(s)	782, 997
HaeIII	GGCC	2 cut(s)	386, 1009
HapII	CCGG	1 cut(s)	8
HhaI	GCGC	1 cut(s)	939
Hin1II	CATG	2 cut(s)	391, 815
Hin6I	GCGC	1 cut(s)	937
HinP1I	GCGC	1 cut(s)	937
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	1035
HinfI	GANTC	5 cut(s)	42, 321, 520, 1065, 1112
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	4 cut(s)	183, 254, 347, 1111
Hpy166II	GTNNAC	2 cut(s)	121, 1130
Hpy188III	TCNNGA	3 cut(s)	97, 253, 318
Hpy8I	GTNNAC	2 cut(s)	121, 1130
Hpy99I	CGWCG	3 cut(s)	122, 125, 874
HpyAV	CCTTC	5 cut(s)	270, 385, 619, 830, 1038
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4IV	ACGT	2 cut(s)	903, 1173
HpyCH4V	TGCA	5 cut(s)	153, 488, 811, 961, 1197
HpyF10VI	GCNNNNNNNGC	5 cut(s)	150, 392, 466, 566, 945
HpyF3I	CTNAG	6 cut(s)	381, 470, 732, 744, 917, 1047
HpySE526I	ACGT	2 cut(s)	903, 1173
Hsp92II	CATG	2 cut(s)	391, 815
HspAI	GCGC	1 cut(s)	937
Kzo9I	GATC	2 cut(s)	124, 209
LguI	GCTCTTC	1 cut(s)	1074
LmnI	GCTCC	2 cut(s)	763, 849
LweI	GCATC	1 cut(s)	166
MabI	ACCWGGT	1 cut(s)	131
MaeII	ACGT	2 cut(s)	903, 1173
MaeIII	GTNAC	1 cut(s)	653
MalI	GATC	2 cut(s)	126, 211
MboI	GATC	2 cut(s)	124, 209
MfeI	CAATTG	1 cut(s)	429
MhlI	GDGCHC	1 cut(s)	440
MluCI	AATT	5 cut(s)	352, 429, 493, 545, 592
MmeI	TCCRAC	1 cut(s)	1149
MroXI	GAANNNNTTC	1 cut(s)	177
MseI	TTAA	4 cut(s)	269, 668, 768, 1187
MspA1I	CMGCKG	2 cut(s)	215, 617
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	133
MunI	CAATTG	1 cut(s)	429
Mva1269I	GAATGC	2 cut(s)	155, 705
MvaI	CCWGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	5 cut(s)	150, 392, 466, 566, 945
NdeII	GATC	2 cut(s)	124, 209
NlaIII	CATG	2 cut(s)	391, 815
NlaIV	GGNNCC	2 cut(s)	6, 204
PciSI	GCTCTTC	1 cut(s)	1074
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PctI	GAATGC	2 cut(s)	155, 705
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	5 cut(s)	42, 321, 520, 1065, 1112
PflMI	CCANNNNNTGG	1 cut(s)	812
PkrI	GCNGC	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	131
PspFI	CCCAGC	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	6, 204
PspPI	GGNCC	1 cut(s)	1008
PvuII	CAGCTG	1 cut(s)	215
SalI	GTCGAC	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	1074
SaqAI	TTAA	4 cut(s)	269, 668, 768, 1187
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	2 cut(s)	124, 209
Sau96I	GGNCC	1 cut(s)	1008
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	440
SexAI	ACCWGGT	1 cut(s)	131
SfaNI	GCATC	1 cut(s)	166
SgrDI	CGTCGACG	1 cut(s)	119
SmlI	CTYRAG	3 cut(s)	182, 316, 710
SmoI	CTYRAG	3 cut(s)	182, 316, 710
Sse9I	AATT	5 cut(s)	352, 429, 493, 545, 592
SsiI	CCGC	6 cut(s)	142, 443, 503, 617, 794, 967
StyD4I	CCNGG	1 cut(s)	131
StyI	CCWWGG	2 cut(s)	198, 1069
TaaI	ACNGT	1 cut(s)	659
TaiI	ACGT	2 cut(s)	906, 1176
TaqI	TCGA	5 cut(s)	18, 90, 120, 296, 1146
TasI	AATT	5 cut(s)	352, 429, 493, 545, 592
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	5 cut(s)	42, 321, 520, 1065, 1112
Tru1I	TTAA	4 cut(s)	269, 668, 768, 1187
Tru9I	TTAA	4 cut(s)	269, 668, 768, 1187
TscAI	CASTG	2 cut(s)	664, 711
TspDTI	ATGAA	2 cut(s)	386, 404
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	2 cut(s)	664, 711
Van91I	CCANNNNNTGG	1 cut(s)	812
XagI	CCTNNNNNAGG	1 cut(s)	1073
XapI	RAATTY	2 cut(s)	493, 592
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.