Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008075

Physical Location & Seq

Genomic Coordinates Forward (+)

884528 .. 887477

Gene Structure 2950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1009400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGAACCAGCAAAAATCGATTGGAAAAGTTTAGAGTGGAGATTCGTAGAGGACAAATACTACGAGCAAATAAACGCGCCCAAGTGGTTCGATTTCTTGAACCCCAATGACAATTCCGTCGACGATCAGGCCTGGTTTTGCCGACCCGGATGCAAGCATCCCAAGACGGCTGAGGATTTTCTCAAGTCATCACCTCCCAAGGTTCCGAGCCCCGCTGTTGTTCCTGAAGTTTCTCCACTTGGTGATAAAGTCCAGAGAGATGTGAAACTGAAGAGAAGAGGGTTGAATCAATCTTCAATTTACCCGACTAATAATTCAAGATTCAAGGAAGAAGGTGAAAATCAGAACCCCAATCTATCAACCCCTCCAATGAACCAAGCTAAGGCCATGAAGGCAACAATCAAATCAAGCACAGAGAAGAAGCAACCAATTGAGAGCACCCTGCCGAACGATGAGGTGCTTCCTAAGCTTAGAAGCACGCTGTCAGCGAGGAATTTATTTGCGGGGAGGGATCTTCTGAATCAGATTACGGACTTCTGTTCCGAATTGAAGAGAATGGCTATGAGAGCGAGGGAGGGAGAGGATGTGGAGAATTCGGATGTGAGGAAAAGCCCAGCGGGCTTGCAGGAAGAGGTAGTGAAGGAGGAGTGTAACCGTGAGGTTTTTGGGGAGTTGAAAGGGAGGGAAACAGAGAGAATGCCGCTGTTTGAGGTGGATAAAGGGAAAACTGAGAGGCAAATGGGGAGAAGTCCATTGCTGGAGGTTAATAAAGGGAAAAATGGGAGGCAAATGAAGAGAACGCCATTGCTTGAGGTGAGCAAAATGAACACTGAAGGAATGGAGGGGAGCAATTCAGAGAAGCCAAGGAGGAAAAAAAGAGATGACGAGGCAGAGAACATCCCAATCCCTCTAAGTTTAGAGAATGTTAAGCGCAAAGGGGGCGAGAGCTTGTTGCAAATCCGGACCAACCCTCCCTCTCCTCAATGCTTTTCTACAACAAGGCCTCCCAGCAAAATCACACCTTCAAAAGCTTCCAAGTCCAAGCTGATGGAAAGGGGAGTTCGTGGAGAGGTAGAGCAAAACAAAAAGGTGGTGGTGAACAAGGAGGATTCCACAGAGAAAGGCAAAAACGTTTGTGTAGTCGATGGAAGAGAAGCTAGAGCCCTCGACGTTTTCTGGTTTCTAAAACCTTGCACGACACTTTCCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

404

Amino Acids

45.73

Weight (kDa)

9.22

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52110 AT3G52110 AT3G52110 AT3G52110
fragaria_vesca	FvH4_7g00980 FvH4_7g00980 FvH4_7g00980
malus_domestica	MD02G1313000.v1.1 MD07G1009400.v1.1
prunus_persica	Prupe.2G012400_v2.0.a1 Prupe.2G012400_v2.0.a1
pyrus_communis	pycom02g26260 pycom07g00840
rosa_chinensis	RchiOBHm_Chr1g0315881
rosa_laevigata	RLG00000030726
rosa_multiflora	Rmu_sc0012813.1_g000008 Rmu_ssc0000154.1_g000015
rosa_roxburghii	Rroxscaffold_4G00331350
rosa_rugosa	Rorug01G0006800
rosa_samantha	Rh1AG017500 Rh1BG010000 Rh1CG014800 Rh1DG010400
rosa_wichuraiana	Rw1G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	1 cut(s)	77
AccIII	TCCGGA	1 cut(s)	960
AciI	CCGC	4 cut(s)	213, 503, 617, 701
AclI	AACGTT	1 cut(s)	1131
AclWI	GGATC	1 cut(s)	519
AcsI	RAATTY	2 cut(s)	493, 592
AcuI	CTGAAG	3 cut(s)	246, 290, 852
AdeI	CACNNNGTG	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	8 cut(s)	100, 286, 297, 318, 325, 550, 676, 1026
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	6 cut(s)	380, 469, 948, 1031, 1045, 1157
AluI	AGCT	6 cut(s)	380, 469, 948, 1031, 1045, 1157
Alw21I	GWGCWC	1 cut(s)	440
AlwI	GGATC	1 cut(s)	519
Aor13HI	TCCGGA	1 cut(s)	960
AoxI	GGCC	3 cut(s)	129, 384, 1001
ApoI	RAATTY	2 cut(s)	493, 592
AspLEI	GCGC	2 cut(s)	79, 933
AspS9I	GGNCC	1 cut(s)	963
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	5 cut(s)	183, 254, 347, 826, 1108
AvaII	GGWCC	1 cut(s)	963
BanII	GRGCYC	2 cut(s)	212, 1165
Bbv12I	GWGCWC	1 cut(s)	440
BbvCI	CCTCAGC	1 cut(s)	171
BccI	CCATC	2 cut(s)	1042, 1139
BceAI	ACGGC	1 cut(s)	183
BcgI	CGANNNNNNTGC	2 cut(s)	132, 166
BciT130I	CCWGG	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	147
BfaI	CTAG	1 cut(s)	1158
BglI	GCCNNNNNGGC	2 cut(s)	392, 618
BisI	GCNGC	1 cut(s)	701
BlsI	GCNGC	1 cut(s)	702
Bme1390I	CCNGG	2 cut(s)	133, 147
Bme18I	GGWCC	1 cut(s)	963
BmgT120I	GGNCC	1 cut(s)	963
BmiI	GGNNCC	2 cut(s)	6, 204
BmrFI	CCNGG	2 cut(s)	133, 147
BmsI	GCATC	2 cut(s)	140, 166
BpmI	CTGGAG	1 cut(s)	779
Bpu10I	CCTNAGC	3 cut(s)	171, 381, 465
BpuEI	CTTGAG	2 cut(s)	167, 830
BpuMI	CCSGG	1 cut(s)	147
Bsa29I	ATCGAT	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	198, 863
BsaWI	WCCGGW	1 cut(s)	960
BsaXI	ACNNNNNCTCC	6 cut(s)	570, 600, 955, 985, 988, 1018
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse3DI	GCAATG	2 cut(s)	752, 803
BseAI	TCCGGA	1 cut(s)	960
BseBI	CCWGG	1 cut(s)	133
BseCI	ATCGAT	1 cut(s)	18
BseDI	CCNNGG	2 cut(s)	198, 863
BseGI	GGATG	5 cut(s)	155, 157, 589, 604, 897
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMI	GCAATG	2 cut(s)	752, 803
BseMII	CTCAG	2 cut(s)	162, 720
BseRI	GAGGAG	2 cut(s)	659, 969
BseYI	CCCAGC	2 cut(s)	613, 1007
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	3 cut(s)	131, 386, 1003
BshVI	ATCGAT	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	440
BsiSI	CCGG	2 cut(s)	147, 961
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmI	GAATGC	1 cut(s)	702
BsnI	GGCC	3 cut(s)	131, 386, 1003
Bsp1286I	GDGCHC	3 cut(s)	212, 440, 1165
Bsp13I	TCCGGA	1 cut(s)	960
Bsp143I	GATC	2 cut(s)	124, 511
BspACI	CCGC	4 cut(s)	213, 503, 617, 701
BspANI	GGCC	3 cut(s)	131, 386, 1003
BspCNI	CTCAG	2 cut(s)	163, 721
BspDI	ATCGAT	1 cut(s)	18
BspEI	TCCGGA	1 cut(s)	960
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	6, 204
BspPI	GGATC	1 cut(s)	519
BsrDI	GCAATG	2 cut(s)	752, 803
BssECI	CCNNGG	2 cut(s)	198, 863
BssMI	GATC	2 cut(s)	124, 511
BssT1I	CCWWGG	2 cut(s)	198, 863
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	656
Bst6I	CTCTTC	6 cut(s)	266, 271, 545, 624, 788, 1144
BstC8I	GCNNGC	4 cut(s)	155, 479, 619, 623
BstDEI	CTNAG	6 cut(s)	171, 381, 465, 470, 729, 911
BstF5I	GGATG	5 cut(s)	155, 157, 589, 604, 897
BstFNI	CGCG	1 cut(s)	77
BstHHI	GCGC	2 cut(s)	79, 933
BstKTI	GATC	2 cut(s)	127, 514
BstMBI	GATC	2 cut(s)	124, 511
BstMWI	GCNNNNNNNGC	5 cut(s)	392, 466, 566, 618, 939
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	2 cut(s)	131, 145
BstUI	CGCG	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	511
BstXI	CCANNNNNNTGG	1 cut(s)	1048
BstYI	RGATCY	1 cut(s)	511
Bsu15I	ATCGAT	1 cut(s)	18
BsuRI	GGCC	3 cut(s)	131, 386, 1003
BsuTUI	ATCGAT	1 cut(s)	18
BtsCI	GGATG	5 cut(s)	155, 157, 589, 604, 897
BtsIMutI	CAGTG	1 cut(s)	828
Cac8I	GCNNGC	4 cut(s)	155, 479, 619, 623
CfoI	GCGC	2 cut(s)	79, 933
Cfr13I	GGNCC	1 cut(s)	963
ClaI	ATCGAT	1 cut(s)	18
CviAII	CATG	1 cut(s)	388
DdeI	CTNAG	6 cut(s)	171, 381, 465, 470, 729, 911
DpnI	GATC	2 cut(s)	126, 513
DpnII	GATC	2 cut(s)	124, 511
DraIII	CACNNNGTG	1 cut(s)	242
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
Eam1104I	CTCTTC	6 cut(s)	266, 271, 545, 624, 788, 1144
EarI	CTCTTC	6 cut(s)	266, 271, 545, 624, 788, 1144
Eco130I	CCWWGG	2 cut(s)	198, 863
Eco147I	AGGCCT	2 cut(s)	131, 1003
Eco24I	GRGCYC	2 cut(s)	212, 1165
Eco47I	GGWCC	1 cut(s)	963
Eco57I	CTGAAG	3 cut(s)	246, 290, 852
EcoRI	GAATTC	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	2 cut(s)	198, 863
EcoT38I	GRGCYC	2 cut(s)	212, 1165
ErhI	CCWWGG	2 cut(s)	198, 863
FaeI	CATG	1 cut(s)	391
FaiI	YATR	2 cut(s)	389, 563
FatI	CATG	1 cut(s)	387
FauI	CCCGC	3 cut(s)	220, 496, 610
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	701
FokI	GGATG	5 cut(s)	144, 162, 596, 611, 884
FriOI	GRGCYC	2 cut(s)	212, 1165
Fsp4HI	GCNGC	1 cut(s)	701
FspBI	CTAG	1 cut(s)	1158
GlaI	GCGC	2 cut(s)	78, 932
GluI	GCNGC	1 cut(s)	701
GsaI	CCCAGC	2 cut(s)	617, 1011
GsuI	CTGGAG	1 cut(s)	779
HaeIII	GGCC	3 cut(s)	131, 386, 1003
HapII	CCGG	2 cut(s)	147, 961
HhaI	GCGC	2 cut(s)	79, 933
Hin1II	CATG	1 cut(s)	391
Hin6I	GCGC	2 cut(s)	77, 931
HinP1I	GCGC	2 cut(s)	77, 931
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	2 cut(s)	467, 1029
HinfI	GANTC	5 cut(s)	42, 286, 321, 520, 1109
HpaII	CCGG	2 cut(s)	147, 961
HphI	GGTGA	5 cut(s)	183, 254, 347, 826, 1108
Hpy166II	GTNNAC	2 cut(s)	121, 1099
Hpy188I	TCNGA	7 cut(s)	207, 345, 519, 525, 544, 598, 856
Hpy188III	TCNNGA	5 cut(s)	97, 224, 253, 318, 961
Hpy8I	GTNNAC	2 cut(s)	121, 1099
Hpy99I	CGWCG	3 cut(s)	122, 125, 1172
HpyAV	CCTTC	5 cut(s)	326, 385, 634, 827, 1032
HpyCH4III	ACNGT	1 cut(s)	656
HpyCH4IV	ACGT	2 cut(s)	1131, 1170
HpyCH4V	TGCA	4 cut(s)	153, 625, 955, 1194
HpyF10VI	GCNNNNNNNGC	5 cut(s)	392, 466, 566, 618, 939
HpyF3I	CTNAG	6 cut(s)	171, 381, 465, 470, 729, 911
HpySE526I	ACGT	2 cut(s)	1131, 1170
Hsp92II	CATG	1 cut(s)	391
HspAI	GCGC	2 cut(s)	77, 931
Kpn2I	TCCGGA	1 cut(s)	960
Kzo9I	GATC	2 cut(s)	124, 511
LmnI	GCTCC	1 cut(s)	846
LweI	GCATC	2 cut(s)	140, 166
MaeI	CTAG	1 cut(s)	1158
MaeII	ACGT	2 cut(s)	1131, 1170
MaeIII	GTNAC	1 cut(s)	650
MalI	GATC	2 cut(s)	126, 513
MboI	GATC	2 cut(s)	124, 511
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	3 cut(s)	212, 440, 1165
MluCI	AATT	8 cut(s)	112, 297, 313, 429, 493, 545, 592, 850
MroI	TCCGGA	1 cut(s)	960
MseI	TTAA	2 cut(s)	765, 927
MspA1I	CMGCKG	3 cut(s)	215, 617, 703
MspI	CCGG	2 cut(s)	147, 961
MspR9I	CCNGG	2 cut(s)	133, 147
MunI	CAATTG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	702
MvaI	CCWGG	1 cut(s)	133
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	5 cut(s)	392, 466, 566, 618, 939
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	2 cut(s)	124, 511
NlaIII	CATG	1 cut(s)	391
NlaIV	GGNNCC	2 cut(s)	6, 204
PceI	AGGCCT	2 cut(s)	131, 1003
PcsI	WCGNNNNNNNCGW	1 cut(s)	485
PctI	GAATGC	1 cut(s)	702
PfeI	GAWTC	5 cut(s)	42, 286, 321, 520, 1109
PkrI	GCNGC	1 cut(s)	702
Psp1406I	AACGTT	1 cut(s)	1131
Psp6I	CCWGG	1 cut(s)	131
PspFI	CCCAGC	2 cut(s)	613, 1007
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	6, 204
PspPI	GGNCC	1 cut(s)	963
PsuI	RGATCY	1 cut(s)	511
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	765, 927
SatI	GCNGC	1 cut(s)	701
Sau3AI	GATC	2 cut(s)	124, 511
Sau96I	GGNCC	1 cut(s)	963
ScrFI	CCNGG	2 cut(s)	133, 147
SduI	GDGCHC	3 cut(s)	212, 440, 1165
SfaNI	GCATC	2 cut(s)	140, 166
SgrDI	CGTCGACG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	963
SmlI	CTYRAG	2 cut(s)	182, 809
SmoI	CTYRAG	2 cut(s)	182, 809
Sse9I	AATT	8 cut(s)	112, 297, 313, 429, 493, 545, 592, 850
SseBI	AGGCCT	2 cut(s)	131, 1003
SsiI	CCGC	4 cut(s)	213, 503, 617, 701
SspMI	CTAG	1 cut(s)	1158
StuI	AGGCCT	2 cut(s)	131, 1003
StyD4I	CCNGG	2 cut(s)	131, 145
StyI	CCWWGG	2 cut(s)	198, 863
TaaI	ACNGT	1 cut(s)	656
TaiI	ACGT	2 cut(s)	1134, 1173
TaqI	TCGA	5 cut(s)	18, 90, 120, 1143, 1167
TasI	AATT	8 cut(s)	112, 297, 313, 429, 493, 545, 592, 850
TauI	GCSGC	1 cut(s)	703
TfiI	GAWTC	5 cut(s)	42, 286, 321, 520, 1109
Tru1I	TTAA	2 cut(s)	765, 927
Tru9I	TTAA	2 cut(s)	765, 927
TscAI	CASTG	1 cut(s)	835
TspDTI	ATGAA	4 cut(s)	386, 404, 806, 839
TspGWI	ACGGA	2 cut(s)	106, 545
TspRI	CASTG	1 cut(s)	835
VpaK11BI	GGWCC	1 cut(s)	963
XapI	RAATTY	2 cut(s)	493, 592
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	1 cut(s)	1158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.