Rh1BG010000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0008075
Physical Location & Seq
Forward (+)
1179286 .. 1182586
3301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG010000.1

Sequence Viewer

Length: 1050 bp
ATGGAACCAGCAAAAATAGATTGGAAAAACTTGGAATGGAGATTTGTAGAGGACAAAGCCTACGAGCAGATCAACGCTCCCAAGTGGTTCGATTTCTTGAACCCCAATGACAACCTCGTCGACGACCACGCCTGGTTTTGCACACCTGAATGCAATCACCCAAAGACGGCTGAAGATTTTCTCAGATCCTCACCTTTCAAGGTTCCGAGCCCATCTGATGCTTCTGGGGTCTCTCCGCTTGGTGATAAATTCCAAAGAGATGTGAAATTGAAAAGAAGAGGGCTCACCAGCTCTTCAGTTCATCCGACGAATAATAATTCAAGATTCAAGGAGGATAGCGAAAATCAGAACCCCAACCTATCAACCCCTCCAAATTATCAAGCTAAGGCCATGAAGGAAGCAATCAAATCAAGTACAGAGAAGAAGCAACCAACTGACACTGCTCCACAGAACAATGAGGTGCTCCCCAGGCTGAAAAGCACGCTGTCGGCGAGGAACTTATTCGCAGGAAAGGAGATTCTGAATCAGATCACTGACTTCTGCAGCGAATTGAAGAGAATGGCGATGGCGAGAGCAAAGGAGAGAGAGGAAGTGGAGAAAGGTGTGGTGAATAACAAGGAAGAGGAGGTGAAGCAGGTGGAGTCTAATGGTGAGTTGAATGGGAGGGAAAGAGAGAGAATGCCATTGCTTGAATTGGGTAAAGGGAAAACAGAAACAATGGTGAAGGAGGAGGAGTGTAATGGCGAAGCTGGGAGTGAGGTGAATGGGAAGCAAAGAGAAAGAATGCCATTGATGGATGCGAATAAAGGGAAAACTGAAGGATTTGAGGGGAGAATTTTAAAGGAGGGAAAGAGGGTTAAGAAAAGAGTTGACAATGCAGAGAACATTCCAGTCTCTTTAAATTTGGAGAGTGTAAAGCGTAAAGGGGGAGAGGACTTGTTGCAAATCCGGACCAACCCTCCCTCTCCTCAATGCTTTTCTGCTACAAGGCCCCCCAGCAAAATCACACCTTCAAAAGCTTCGAAGTCCAAACTGATGGTATGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

349

Amino Acids

39.42

Weight (kDa)

8.84

Isoelectric Point (pI)

50.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 625
AasI GACNNNNNNGTC 1 cut(s) 116
Acc36I ACCTGC 1 cut(s) 625
AccI GTMKAC 1 cut(s) 120
AccIII TCCGGA 1 cut(s) 948
AciI CCGC 1 cut(s) 236
AclWI GGATC 1 cut(s) 180
AcsI RAATTY 3 cut(s) 248, 834, 901
AcuI CTGAAG 3 cut(s) 192, 279, 837
AfaI GTAC 1 cut(s) 415
AfiI CCNNNNNNNGG 1 cut(s) 166
AgsI TTSAA 9 cut(s) 100, 199, 271, 321, 328, 553, 658, 692, 1014
AjnI CCWGG 2 cut(s) 131, 467
AluBI AGCT 4 cut(s) 291, 383, 749, 1019
AluI AGCT 4 cut(s) 291, 383, 749, 1019
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 2 cut(s) 235, 898
AlwI GGATC 1 cut(s) 180
Aor13HI TCCGGA 1 cut(s) 948
AoxI GGCC 2 cut(s) 387, 989
ApeKI GCWGC 1 cut(s) 543
ApoI RAATTY 3 cut(s) 248, 834, 901
Asp700I GAANNNNTTC 2 cut(s) 177, 500
AspS9I GGNCC 2 cut(s) 951, 990
AsuHPI GGTGA 9 cut(s) 149, 183, 254, 277, 619, 640, 662, 733, 772
AsuII TTCGAA 1 cut(s) 1022
AvaII GGWCC 1 cut(s) 951
BanII GRGCYC 2 cut(s) 212, 285
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 1 cut(s) 555
BccI CCATC 4 cut(s) 220, 559, 787, 1030
BceAI ACGGC 1 cut(s) 183
BciT130I CCWGG 2 cut(s) 133, 469
BcoDI GTCTC 2 cut(s) 235, 898
BfaI CTAG 1 cut(s) 1048
BfmI CTRYAG 1 cut(s) 541
BfuAI ACCTGC 1 cut(s) 625
BisI GCNGC 1 cut(s) 544
BlsI GCNGC 1 cut(s) 545
Bme1390I CCNGG 2 cut(s) 133, 469
Bme18I GGWCC 1 cut(s) 951
BmgT120I GGNCC 2 cut(s) 951, 990
BmiI GGNNCC 3 cut(s) 6, 204, 992
BmrFI CCNGG 2 cut(s) 133, 469
BmsI GCATC 2 cut(s) 208, 787
Bpu10I CCTNAGC 1 cut(s) 384
Bpu14I TTCGAA 1 cut(s) 1022
BsaI GGTCTC 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 467
BsaWI WCCGGW 1 cut(s) 948
BsaXI ACNNNNNCTCC 4 cut(s) 719, 749, 943, 973
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 890
Bse3DI GCAATG 1 cut(s) 683
BseAI TCCGGA 1 cut(s) 948
BseBI CCWGG 2 cut(s) 133, 469
BseDI CCNNGG 1 cut(s) 467
BseGI GGATG 2 cut(s) 301, 802
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMI GCAATG 1 cut(s) 683
BseMII CTCAG 1 cut(s) 196
BseNI ACTGG 1 cut(s) 890
BseRI GAGGAG 4 cut(s) 638, 743, 746, 957
BseXI GCAGC 1 cut(s) 555
BseYI CCCAGC 2 cut(s) 749, 995
BshFI GGCC 2 cut(s) 389, 991
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 1 cut(s) 949
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 2 cut(s) 235, 898
BsmI GAATGC 3 cut(s) 155, 684, 789
BsnI GGCC 2 cut(s) 389, 991
Bso31I GGTCTC 1 cut(s) 235
Bsp119I TTCGAA 1 cut(s) 1022
Bsp1286I GDGCHC 3 cut(s) 212, 285, 465
Bsp13I TCCGGA 1 cut(s) 948
Bsp143I GATC 3 cut(s) 69, 185, 528
BspACI CCGC 1 cut(s) 236
BspANI GGCC 2 cut(s) 389, 991
BspCNI CTCAG 1 cut(s) 195
BspEI TCCGGA 1 cut(s) 948
BspLI GGNNCC 3 cut(s) 6, 204, 992
BspMAI CTGCAG 1 cut(s) 545
BspMI ACCTGC 1 cut(s) 625
BspPI GGATC 1 cut(s) 180
BspQI GCTCTTC 1 cut(s) 298
BspT104I TTCGAA 1 cut(s) 1022
BspTNI GGTCTC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 683
BsrI ACTGG 1 cut(s) 890
BssECI CCNNGG 1 cut(s) 467
BssMI GATC 3 cut(s) 69, 185, 528
Bst2UI CCWGG 2 cut(s) 133, 469
Bst6I CTCTTC 4 cut(s) 271, 298, 548, 615
BstBI TTCGAA 1 cut(s) 1022
BstC8I GCNNGC 1 cut(s) 482
BstDEI CTNAG 2 cut(s) 182, 384
BstF5I GGATG 2 cut(s) 301, 802
BstKTI GATC 3 cut(s) 72, 188, 531
BstMAI GTCTC 2 cut(s) 235, 898
BstMBI GATC 3 cut(s) 69, 185, 528
BstMWI GCNNNNNNNGC 1 cut(s) 469
BstNI CCWGG 2 cut(s) 133, 469
BstSCI CCNGG 2 cut(s) 131, 467
BstSFI CTRYAG 1 cut(s) 541
BstV1I GCAGC 1 cut(s) 555
BstX2I RGATCY 1 cut(s) 185
BstXI CCANNNNNNTGG 1 cut(s) 1036
BstYI RGATCY 1 cut(s) 185
BsuRI GGCC 2 cut(s) 389, 991
BtgZI GCGATG 1 cut(s) 578
BtsCI GGATG 2 cut(s) 301, 802
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 2 cut(s) 438, 531
BveI ACCTGC 1 cut(s) 625
Cac8I GCNNGC 1 cut(s) 482
Cfr13I GGNCC 2 cut(s) 951, 990
Csp6I GTAC 1 cut(s) 414
CviAII CATG 1 cut(s) 391
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 2 cut(s) 182, 384
DpnI GATC 3 cut(s) 71, 187, 530
DpnII GATC 3 cut(s) 69, 185, 528
DraI TTTAAA 2 cut(s) 840, 900
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
Eam1104I CTCTTC 4 cut(s) 271, 298, 548, 615
EarI CTCTTC 4 cut(s) 271, 298, 548, 615
Eco24I GRGCYC 2 cut(s) 212, 285
Eco31I GGTCTC 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 951
Eco57I CTGAAG 3 cut(s) 192, 279, 837
EcoO109I RGGNCCY 1 cut(s) 990
EcoRII CCWGG 2 cut(s) 131, 467
EcoT38I GRGCYC 2 cut(s) 212, 285
FaeI CATG 1 cut(s) 394
FaiI YATR 2 cut(s) 392, 1042
FatI CATG 1 cut(s) 390
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 544
FokI GGATG 2 cut(s) 288, 809
FriOI GRGCYC 2 cut(s) 212, 285
Fsp4HI GCNGC 1 cut(s) 544
FspBI CTAG 1 cut(s) 1048
GluI GCNGC 1 cut(s) 544
GsaI CCCAGC 2 cut(s) 753, 999
HaeIII GGCC 2 cut(s) 389, 991
HapII CCGG 1 cut(s) 949
Hin1II CATG 1 cut(s) 394
HincII GTYRAC 2 cut(s) 121, 871
HindII GTYRAC 2 cut(s) 121, 871
HindIII AAGCTT 1 cut(s) 1017
HinfI GANTC 4 cut(s) 324, 517, 523, 641
HpaII CCGG 1 cut(s) 949
HphI GGTGA 9 cut(s) 149, 183, 254, 277, 619, 640, 662, 733, 772
Hpy166II GTNNAC 2 cut(s) 121, 871
Hpy188I TCNGA 7 cut(s) 185, 207, 217, 306, 348, 522, 528
Hpy188III TCNNGA 3 cut(s) 97, 321, 949
Hpy8I GTNNAC 2 cut(s) 121, 871
Hpy99I CGWCG 3 cut(s) 122, 125, 310
HpyAV CCTTC 4 cut(s) 388, 718, 812, 1020
HpyCH4V TGCA 5 cut(s) 141, 153, 543, 878, 943
HpyF10VI GCNNNNNNNGC 1 cut(s) 469
HpyF3I CTNAG 2 cut(s) 182, 384
Hsp92II CATG 1 cut(s) 394
Kpn2I TCCGGA 1 cut(s) 948
Kzo9I GATC 3 cut(s) 69, 185, 528
LguI GCTCTTC 1 cut(s) 298
LmnI GCTCC 3 cut(s) 82, 448, 468
Lsp1109I GCAGC 1 cut(s) 555
LweI GCATC 2 cut(s) 208, 787
MaeI CTAG 1 cut(s) 1048
MaeIII GTNAC 1 cut(s) 1043
MalI GATC 3 cut(s) 71, 187, 530
MboI GATC 3 cut(s) 69, 185, 528
MboII GAAGA 6 cut(s) 185, 285, 288, 433, 565, 632
MflI RGATCY 1 cut(s) 185
MhlI GDGCHC 3 cut(s) 212, 285, 465
MluCI AATT 8 cut(s) 248, 266, 316, 373, 548, 692, 834, 901
MlyI GAGTC 1 cut(s) 650
MmeI TCCRAC 1 cut(s) 329
MroI TCCGGA 1 cut(s) 948
MroXI GAANNNNTTC 2 cut(s) 177, 500
MseI TTAA 3 cut(s) 839, 858, 899
MslI CAYNNNNRTG 1 cut(s) 148
MspI CCGG 1 cut(s) 949
MspR9I CCNGG 2 cut(s) 133, 469
Mva1269I GAATGC 3 cut(s) 155, 684, 789
MvaI CCWGG 2 cut(s) 133, 469
MwoI GCNNNNNNNGC 1 cut(s) 469
NdeII GATC 3 cut(s) 69, 185, 528
NlaIII CATG 1 cut(s) 394
NlaIV GGNNCC 3 cut(s) 6, 204, 992
NspV TTCGAA 1 cut(s) 1022
PaqCI CACCTGC 1 cut(s) 625
PciSI GCTCTTC 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 488
PctI GAATGC 3 cut(s) 155, 684, 789
PdmI GAANNNNTTC 2 cut(s) 177, 500
PfeI GAWTC 3 cut(s) 324, 517, 523
PkrI GCNGC 1 cut(s) 545
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
Psp6I CCWGG 2 cut(s) 131, 467
PspFI CCCAGC 2 cut(s) 749, 995
PspGI CCWGG 2 cut(s) 131, 467
PspN4I GGNNCC 3 cut(s) 6, 204, 992
PspPI GGNCC 2 cut(s) 951, 990
PstI CTGCAG 1 cut(s) 545
PsuI RGATCY 1 cut(s) 185
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
RseI CAYNNNNRTG 1 cut(s) 148
SalI GTCGAC 1 cut(s) 119
SapI GCTCTTC 1 cut(s) 298
SaqAI TTAA 3 cut(s) 839, 858, 899
SatI GCNGC 1 cut(s) 544
Sau3AI GATC 3 cut(s) 69, 185, 528
Sau96I GGNCC 2 cut(s) 951, 990
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 2 cut(s) 133, 469
SduI GDGCHC 3 cut(s) 212, 285, 465
SfaNI GCATC 2 cut(s) 208, 787
SfcI CTRYAG 1 cut(s) 541
SfuI TTCGAA 1 cut(s) 1022
SgrDI CGTCGACG 1 cut(s) 119
SinI GGWCC 1 cut(s) 951
SmiMI CAYNNNNRTG 1 cut(s) 148
Sse9I AATT 8 cut(s) 248, 266, 316, 373, 548, 692, 834, 901
SsiI CCGC 1 cut(s) 236
SspMI CTAG 1 cut(s) 1048
StyD4I CCNGG 2 cut(s) 131, 467
TaqI TCGA 3 cut(s) 90, 120, 1022
TasI AATT 8 cut(s) 248, 266, 316, 373, 548, 692, 834, 901
TatI WGTACW 1 cut(s) 413
TfiI GAWTC 3 cut(s) 324, 517, 523
Tru1I TTAA 3 cut(s) 839, 858, 899
Tru9I TTAA 3 cut(s) 839, 858, 899
TscAI CASTG 2 cut(s) 445, 538
TseI GCWGC 1 cut(s) 543
TspDTI ATGAA 2 cut(s) 290, 407
TspRI CASTG 2 cut(s) 445, 538
VpaK11BI GGWCC 1 cut(s) 951
XapI RAATTY 3 cut(s) 248, 834, 901
XmiI GTMKAC 1 cut(s) 120
XmnI GAANNNNTTC 2 cut(s) 177, 500
XspI CTAG 1 cut(s) 1048
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.