Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008075

Physical Location & Seq

Genomic Coordinates Forward (+)

2311037 .. 2314075

Gene Structure 3039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG014800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAATAATAATTCAAGATTCAAGGAGGATAGTGAAAATCAGAACCCCAATCTATCAACCCCTCCAAATTATCAAGCTACGGCCATGAAGGAAGCAGTCAAATCAAGTACAGAGAAGAAGCAACCAACTGACACTGCTCCAAAGAACAATGAGGTGCTCCCCAGGCTGAAAAGCACGCTGTCGGCGAGGAACTTATTCGCAGGAAAGGAGATTCTGAACCAGATCACTGACTTCTGCAGCGAATTGAAGAGATTGGCGACGACGAGAGCAAAGGAGAGAGAGGAAGTGGAGAAAGGTGTGGTGAATAACAAGGAAGAGGAGGTGAAGCAGGTGGAGTCTAATGGTGAGTTGAATGGGAGGGAAAGAGAGAGAATGCCATTGCTTGAATTGGGTAAAGGGAAAACAGAAACAATGGTGAAGGAGGAGGAGTGTAATGGCGAAGTTGGGAGTGAGGTGAATGGGAAGCAAAGGGAAAGACTGCCATTGATGGATGCGAATAAAGGGAAGACTGAAGGATTTGAGGGGAGAATTTTAAAGGAGGGAAAGAGGATTAAGAAAAGAGTTGACAATGCAGAGAACATTCCAGTCTCTTTAAATTTGGAGAGTGTAAAGCGTCAAGGGGGAGAGCACTTGTTGCAAATCCGGACCAACCCTCCCTCTCCTCAATGCTTTTCTGCTACAAGGCCCCCCAGCAAAATCACACCTTCAAAAGCTTCGAAGTCCAAACTGATGGAAAAGGGGGGAATCCTTCAAGGGCAGACCAACAAACAAGTGATCACCACGGGTGATTCTAAACAAATAATCACCAAGGATGATTCTAAACAAGTGATAACCAAGGATGATTCTAAACAAGTGATAACCAAGGATGATTCCACAGAAAAAGCCAAAAGCGTTTATATTGCTGATGGAAAAGAAGCAAGAACCTTGGACGTTTTCTGGTTTTTAAAACCTTGCACACTATCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

322

Amino Acids

35.98

Weight (kDa)

9.18

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52110 AT3G52110 AT3G52110 AT3G52110
fragaria_vesca	FvH4_7g00980 FvH4_7g00980 FvH4_7g00980
malus_domestica	MD02G1313000.v1.1 MD07G1009400.v1.1
prunus_persica	Prupe.2G012400_v2.0.a1 Prupe.2G012400_v2.0.a1
pyrus_communis	pycom02g26260 pycom07g00840
rosa_chinensis	RchiOBHm_Chr1g0315881
rosa_laevigata	RLG00000030726
rosa_multiflora	Rmu_sc0012813.1_g000008 Rmu_ssc0000154.1_g000015
rosa_roxburghii	Rroxscaffold_4G00331350
rosa_rugosa	Rorug01G0006800
rosa_samantha	Rh1AG017500 Rh1BG010000 Rh1CG014800 Rh1DG010400
rosa_wichuraiana	Rw1G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	319
Acc36I	ACCTGC	1 cut(s)	319
AccIII	TCCGGA	1 cut(s)	642
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	2 cut(s)	528, 595
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	1 cut(s)	109
AgsI	TTSAA	7 cut(s)	15, 22, 247, 352, 386, 708, 752
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	2 cut(s)	77, 713
AluI	AGCT	2 cut(s)	77, 713
Alw21I	GWGCWC	2 cut(s)	159, 630
Alw26I	GTCTC	1 cut(s)	592
Aor13HI	TCCGGA	1 cut(s)	642
AoxI	GGCC	2 cut(s)	81, 683
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	2 cut(s)	528, 595
Asp700I	GAANNNNTTC	1 cut(s)	194
AspS9I	GGNCC	2 cut(s)	645, 684
AsuHPI	GGTGA	8 cut(s)	313, 334, 356, 427, 466, 769, 796, 797
AsuII	TTCGAA	1 cut(s)	716
AvaII	GGWCC	1 cut(s)	645
BbsI	GAAGAC	1 cut(s)	512
Bbv12I	GWGCWC	2 cut(s)	159, 630
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	3 cut(s)	481, 724, 899
BceAI	ACGGC	1 cut(s)	96
BciT130I	CCWGG	1 cut(s)	163
BclI	TGATCA	1 cut(s)	774
BcoDI	GTCTC	1 cut(s)	592
BfmI	CTRYAG	1 cut(s)	235
BfuAI	ACCTGC	1 cut(s)	319
BisI	GCNGC	1 cut(s)	238
BlsI	GCNGC	1 cut(s)	239
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	645
BmgT120I	GGNCC	2 cut(s)	645, 684
BmiI	GGNNCC	1 cut(s)	686
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	481
BpiI	GAAGAC	1 cut(s)	512
Bpu14I	TTCGAA	1 cut(s)	716
BsaJI	CCNNGG	6 cut(s)	161, 780, 807, 834, 861, 924
BsaWI	WCCGGW	1 cut(s)	642
BsaXI	ACNNNNNCTCC	4 cut(s)	413, 443, 637, 667
Bse1I	ACTGG	1 cut(s)	584
Bse3DI	GCAATG	1 cut(s)	377
BseAI	TCCGGA	1 cut(s)	642
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	6 cut(s)	161, 780, 807, 834, 861, 924
BseGI	GGATG	4 cut(s)	496, 817, 844, 871
BseMI	GCAATG	1 cut(s)	377
BseNI	ACTGG	1 cut(s)	584
BseRI	GAGGAG	4 cut(s)	332, 437, 440, 651
BseXI	GCAGC	1 cut(s)	249
BseYI	CCCAGC	1 cut(s)	689
BshFI	GGCC	2 cut(s)	83, 685
BsiHKAI	GWGCWC	2 cut(s)	159, 630
BsiSI	CCGG	1 cut(s)	643
BsmAI	GTCTC	1 cut(s)	592
BsmI	GAATGC	1 cut(s)	378
BsnI	GGCC	2 cut(s)	83, 685
Bsp119I	TTCGAA	1 cut(s)	716
Bsp1286I	GDGCHC	2 cut(s)	159, 630
Bsp13I	TCCGGA	1 cut(s)	642
Bsp143I	GATC	2 cut(s)	222, 774
BspANI	GGCC	2 cut(s)	83, 685
BspEI	TCCGGA	1 cut(s)	642
BspLI	GGNNCC	1 cut(s)	686
BspMAI	CTGCAG	1 cut(s)	239
BspMI	ACCTGC	1 cut(s)	319
BspT104I	TTCGAA	1 cut(s)	716
BsrDI	GCAATG	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	584
BssECI	CCNNGG	6 cut(s)	161, 780, 807, 834, 861, 924
BssMI	GATC	2 cut(s)	222, 774
BssT1I	CCWWGG	4 cut(s)	807, 834, 861, 924
Bst2UI	CCWGG	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	242, 309
BstAPI	GCANNNNNTGC	1 cut(s)	634
BstBI	TTCGAA	1 cut(s)	716
BstC8I	GCNNGC	1 cut(s)	176
BstDSI	CCRYGG	1 cut(s)	780
BstF5I	GGATG	4 cut(s)	496, 817, 844, 871
BstKTI	GATC	2 cut(s)	225, 777
BstMAI	GTCTC	1 cut(s)	592
BstMBI	GATC	2 cut(s)	222, 774
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 634
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	235
BstV1I	GCAGC	1 cut(s)	249
BstV2I	GAAGAC	1 cut(s)	512
BstXI	CCANNNNNNTGG	1 cut(s)	730
BsuRI	GGCC	2 cut(s)	83, 685
BtgI	CCRYGG	1 cut(s)	780
BtsCI	GGATG	4 cut(s)	496, 817, 844, 871
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	2 cut(s)	132, 225
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	176
Cfr13I	GGNCC	2 cut(s)	645, 684
CseI	GACGC	1 cut(s)	602
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	6 cut(s)	77, 83, 166, 685, 713, 884
CviKI_1	RGCY	6 cut(s)	77, 83, 166, 685, 713, 884
CviQI	GTAC	1 cut(s)	108
DpnI	GATC	2 cut(s)	224, 776
DpnII	GATC	2 cut(s)	222, 774
DraI	TTTAAA	3 cut(s)	534, 594, 945
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	242, 309
EarI	CTCTTC	2 cut(s)	242, 309
Eco130I	CCWWGG	4 cut(s)	807, 834, 861, 924
Eco47I	GGWCC	1 cut(s)	645
Eco57I	CTGAAG	1 cut(s)	531
EcoO109I	RGGNCCY	1 cut(s)	684
EcoRII	CCWGG	1 cut(s)	161
EcoT14I	CCWWGG	4 cut(s)	807, 834, 861, 924
ErhI	CCWWGG	4 cut(s)	807, 834, 861, 924
FaeI	CATG	1 cut(s)	88
FaiI	YATR	2 cut(s)	86, 897
FatI	CATG	1 cut(s)	84
FbaI	TGATCA	1 cut(s)	774
Fnu4HI	GCNGC	1 cut(s)	238
FokI	GGATG	4 cut(s)	503, 824, 851, 878
Fsp4HI	GCNGC	1 cut(s)	238
GluI	GCNGC	1 cut(s)	238
GsaI	CCCAGC	1 cut(s)	693
HaeIII	GGCC	2 cut(s)	83, 685
HapII	CCGG	1 cut(s)	643
HgaI	GACGC	1 cut(s)	602
Hin1II	CATG	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HindIII	AAGCTT	1 cut(s)	711
HinfI	GANTC	8 cut(s)	18, 211, 335, 744, 788, 815, 842, 869
HpaII	CCGG	1 cut(s)	643
HphI	GGTGA	8 cut(s)	313, 334, 356, 427, 466, 769, 796, 797
Hpy166II	GTNNAC	1 cut(s)	565
Hpy188I	TCNGA	2 cut(s)	42, 216
Hpy188III	TCNNGA	2 cut(s)	15, 643
Hpy8I	GTNNAC	1 cut(s)	565
Hpy99I	CGWCG	2 cut(s)	262, 265
HpyAV	CCTTC	5 cut(s)	82, 412, 506, 714, 758
HpyCH4IV	ACGT	1 cut(s)	930
HpyCH4V	TGCA	4 cut(s)	237, 572, 637, 954
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 634
HpySE526I	ACGT	1 cut(s)	930
Hsp92II	CATG	1 cut(s)	88
Kpn2I	TCCGGA	1 cut(s)	642
Ksp22I	TGATCA	1 cut(s)	774
Kzo9I	GATC	2 cut(s)	222, 774
LmnI	GCTCC	2 cut(s)	142, 162
LpnPI	CCDG	9 cut(s)	148, 175, 186, 233, 314, 597, 656, 703, 922
Lsp1109I	GCAGC	1 cut(s)	249
LweI	GCATC	1 cut(s)	481
MaeII	ACGT	1 cut(s)	930
MalI	GATC	2 cut(s)	224, 776
MboI	GATC	2 cut(s)	222, 774
MboII	GAAGA	4 cut(s)	127, 259, 326, 517
MhlI	GDGCHC	2 cut(s)	159, 630
MluCI	AATT	6 cut(s)	10, 67, 242, 386, 528, 595
MlyI	GAGTC	1 cut(s)	344
MroI	TCCGGA	1 cut(s)	642
MroXI	GAANNNNTTC	1 cut(s)	194
MseI	TTAA	4 cut(s)	533, 552, 593, 944
MspI	CCGG	1 cut(s)	643
MspR9I	CCNGG	1 cut(s)	163
Mva1269I	GAATGC	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	163, 634
NdeII	GATC	2 cut(s)	222, 774
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	686
NspV	TTCGAA	1 cut(s)	716
PaqCI	CACCTGC	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	182
PctI	GAATGC	1 cut(s)	378
PdmI	GAANNNNTTC	1 cut(s)	194
PfeI	GAWTC	7 cut(s)	18, 211, 744, 788, 815, 842, 869
PkrI	GCNGC	1 cut(s)	239
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	161
PspFI	CCCAGC	1 cut(s)	689
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	686
PspPI	GGNCC	2 cut(s)	645, 684
PstI	CTGCAG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
SaqAI	TTAA	4 cut(s)	533, 552, 593, 944
SatI	GCNGC	1 cut(s)	238
Sau3AI	GATC	2 cut(s)	222, 774
Sau96I	GGNCC	2 cut(s)	645, 684
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	159, 630
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	235
SfuI	TTCGAA	1 cut(s)	716
SinI	GGWCC	1 cut(s)	645
Sse9I	AATT	6 cut(s)	10, 67, 242, 386, 528, 595
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	4 cut(s)	807, 834, 861, 924
TaiI	ACGT	1 cut(s)	933
TaqI	TCGA	1 cut(s)	716
TasI	AATT	6 cut(s)	10, 67, 242, 386, 528, 595
TatI	WGTACW	1 cut(s)	107
TfiI	GAWTC	7 cut(s)	18, 211, 744, 788, 815, 842, 869
Tru1I	TTAA	4 cut(s)	533, 552, 593, 944
Tru9I	TTAA	4 cut(s)	533, 552, 593, 944
TscAI	CASTG	2 cut(s)	139, 232
TseI	GCWGC	1 cut(s)	237
TspDTI	ATGAA	2 cut(s)	17, 101
TspRI	CASTG	2 cut(s)	139, 232
VpaK11BI	GGWCC	1 cut(s)	645
XapI	RAATTY	2 cut(s)	528, 595
XmnI	GAANNNNTTC	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.