Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0008075

Physical Location & Seq

Genomic Coordinates Forward (+)

1560902 .. 1563697

Gene Structure 2796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G001040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAACCCTTTAGACCCACCAACGTTCCGAGCCCATCTGATGCTTCTGGGGCCTCTCCGCTTGGTGATAAATTCCAAAGAGATGTGAAGTTGAAAAGAAGAGGGCTCACCAACTCTTCAGTTCATCCAATGAACAATAATTCAAGATTCAAGGAGGATAGTGAAAATCAGAACCCCAACCTATCAACCCCTCCAAATTATCAAGCTAAGGCCATGAAGGAAGCAATCAAATCAAGTACAGAGAAGAAGCAACCAACTGACACTGCTCCACAGAACAATGAGGTGCTCCCCAGGCTGAAAAGCACGCTGTCGGCGAGGAACTTATTCGCAGGAAAGGAGATTCTGAACCAGATCACTGACTTCTGCAGCGAATTGAAGAGAATGGCGACGGCGAGAGCAAAGGAGAGAGAGGAAGTGGAGAAAGGTGTGGTGAATAACAAGGAAGAGGAGGTGAAGCAGGTGGAGTCTAATGGTGAGTTGAATGGGAGGGAAAGAGAGAGAATGCCATTGCTTGGATTGGGTAAAGGGAAAACAGAAACAATGGTGAAGGAGGAGGAGTGTAATGGCGAAGTTGGGAGTGAGGTGAATGGGAAGCAAAGGGAAAGAATGCCATTGATGGATGCGAATAAAGGGAAGACTGAAGGATTTGAGGGGAGACTTTTAAAGGAGGGAAAGAGGATTAAGAAAAGAGTTGACAATGCAGAGAACATTCCAGTCTCTTTAAATTTGGAGAGTGTAAAGCGTCAAGGGGGAGAGCACTTGTTGCAAATCCGGACCAACCCTCCCTCTCCTCAATGCTTTTCTGCTACAAGGCCCCCCAGCAAAATCACACCTTCAAAAGCTTCGAAGTCCAAACTGATGGAAAAGGGGGGAATCCTTCAAGGGCAGACCAACAAACAAGTGATCGCCACGGGTGATTCTAAACAAGTAATCACCAAGGATGATTCTAAACAAGTGATAACCAAGGATGATTCTAAACAAGTGATAACCAAGGATGATTCCACAGAAAAAGCCAAAAGCGTTTATATTGCAGATGGAAAAGAAGCAAGAACCTTGGACGTTTTCTGGTTTTTAAAACCTTGCACACTATCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

365

Amino Acids

40.57

Weight (kDa)

9.4

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52110 AT3G52110 AT3G52110 AT3G52110
fragaria_vesca	FvH4_7g00980 FvH4_7g00980 FvH4_7g00980
malus_domestica	MD02G1313000.v1.1 MD07G1009400.v1.1
prunus_persica	Prupe.2G012400_v2.0.a1 Prupe.2G012400_v2.0.a1
pyrus_communis	pycom02g26260 pycom07g00840
rosa_chinensis	RchiOBHm_Chr1g0315881
rosa_laevigata	RLG00000030726
rosa_multiflora	Rmu_sc0012813.1_g000008 Rmu_ssc0000154.1_g000015
rosa_roxburghii	Rroxscaffold_4G00331350
rosa_rugosa	Rorug01G0006800
rosa_samantha	Rh1AG017500 Rh1BG010000 Rh1CG014800 Rh1DG010400
rosa_wichuraiana	Rw1G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	448
Acc36I	ACCTGC	1 cut(s)	448
AccB7I	CCANNNNNTGG	1 cut(s)	512
AccIII	TCCGGA	1 cut(s)	771
AciI	CCGC	1 cut(s)	59
AclI	AACGTT	1 cut(s)	24
AcsI	RAATTY	2 cut(s)	71, 724
AcuI	CTGAAG	2 cut(s)	102, 660
AfaI	GTAC	1 cut(s)	238
AfiI	CCNNNNNNNGG	1 cut(s)	512
AgsI	TTSAA	7 cut(s)	94, 144, 151, 376, 481, 837, 881
AjnI	CCWGG	1 cut(s)	290
AluBI	AGCT	2 cut(s)	206, 842
AluI	AGCT	2 cut(s)	206, 842
Alw21I	GWGCWC	2 cut(s)	288, 759
Alw26I	GTCTC	2 cut(s)	649, 721
Aor13HI	TCCGGA	1 cut(s)	771
AoxI	GGCC	3 cut(s)	51, 210, 812
ApeKI	GCWGC	1 cut(s)	366
ApoI	RAATTY	2 cut(s)	71, 724
Asp700I	GAANNNNTTC	1 cut(s)	323
AspS9I	GGNCC	3 cut(s)	51, 774, 813
AsuHPI	GGTGA	9 cut(s)	77, 100, 442, 463, 485, 556, 595, 925, 926
AsuII	TTCGAA	1 cut(s)	845
AvaII	GGWCC	1 cut(s)	774
BanII	GRGCYC	2 cut(s)	35, 108
BbsI	GAAGAC	1 cut(s)	641
Bbv12I	GWGCWC	2 cut(s)	288, 759
BbvI	GCAGC	1 cut(s)	378
BccI	CCATC	4 cut(s)	43, 610, 853, 1028
BceAI	ACGGC	1 cut(s)	405
BciT130I	CCWGG	1 cut(s)	292
BcoDI	GTCTC	2 cut(s)	649, 721
BfmI	CTRYAG	1 cut(s)	364
BfuAI	ACCTGC	1 cut(s)	448
BisI	GCNGC	1 cut(s)	367
BlsI	GCNGC	1 cut(s)	368
Bme1390I	CCNGG	1 cut(s)	292
Bme18I	GGWCC	1 cut(s)	774
BmgT120I	GGNCC	3 cut(s)	51, 774, 813
BmiI	GGNNCC	3 cut(s)	6, 52, 815
BmrFI	CCNGG	1 cut(s)	292
BmsI	GCATC	2 cut(s)	31, 610
BpiI	GAAGAC	1 cut(s)	641
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu14I	TTCGAA	1 cut(s)	845
BsaJI	CCNNGG	6 cut(s)	290, 909, 936, 963, 990, 1053
BsaWI	WCCGGW	1 cut(s)	771
BsaXI	ACNNNNNCTCC	4 cut(s)	542, 572, 766, 796
Bsc4I	CCNNNNNNNGG	1 cut(s)	512
Bse1I	ACTGG	1 cut(s)	713
Bse3DI	GCAATG	1 cut(s)	506
BseAI	TCCGGA	1 cut(s)	771
BseBI	CCWGG	1 cut(s)	292
BseDI	CCNNGG	6 cut(s)	290, 909, 936, 963, 990, 1053
BseGI	GGATG	5 cut(s)	124, 625, 946, 973, 1000
BseLI	CCNNNNNNNGG	1 cut(s)	512
BseMI	GCAATG	1 cut(s)	506
BseNI	ACTGG	1 cut(s)	713
BseRI	GAGGAG	4 cut(s)	461, 566, 569, 780
BseXI	GCAGC	1 cut(s)	378
BseYI	CCCAGC	1 cut(s)	818
BshFI	GGCC	3 cut(s)	53, 212, 814
BsiHKAI	GWGCWC	2 cut(s)	288, 759
BsiSI	CCGG	1 cut(s)	772
BslI	CCNNNNNNNGG	1 cut(s)	512
BsmAI	GTCTC	2 cut(s)	649, 721
BsmI	GAATGC	2 cut(s)	507, 612
BsnI	GGCC	3 cut(s)	53, 212, 814
Bsp119I	TTCGAA	1 cut(s)	845
Bsp1286I	GDGCHC	4 cut(s)	35, 108, 288, 759
Bsp13I	TCCGGA	1 cut(s)	771
Bsp143I	GATC	2 cut(s)	351, 903
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	3 cut(s)	53, 212, 814
BspEI	TCCGGA	1 cut(s)	771
BspLI	GGNNCC	3 cut(s)	6, 52, 815
BspMAI	CTGCAG	1 cut(s)	368
BspMI	ACCTGC	1 cut(s)	448
BspT104I	TTCGAA	1 cut(s)	845
BsrDI	GCAATG	1 cut(s)	506
BsrI	ACTGG	1 cut(s)	713
BssECI	CCNNGG	6 cut(s)	290, 909, 936, 963, 990, 1053
BssMI	GATC	2 cut(s)	351, 903
BssT1I	CCWWGG	4 cut(s)	936, 963, 990, 1053
Bst2UI	CCWGG	1 cut(s)	292
Bst6I	CTCTTC	4 cut(s)	94, 121, 371, 438
BstAPI	GCANNNNNTGC	1 cut(s)	763
BstBI	TTCGAA	1 cut(s)	845
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	207
BstDSI	CCRYGG	1 cut(s)	909
BstF5I	GGATG	5 cut(s)	124, 625, 946, 973, 1000
BstKTI	GATC	2 cut(s)	354, 906
BstMAI	GTCTC	2 cut(s)	649, 721
BstMBI	GATC	2 cut(s)	351, 903
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 292, 763
BstNI	CCWGG	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	290
BstSFI	CTRYAG	1 cut(s)	364
BstV1I	GCAGC	1 cut(s)	378
BstV2I	GAAGAC	1 cut(s)	641
BstXI	CCANNNNNNTGG	1 cut(s)	859
BsuRI	GGCC	3 cut(s)	53, 212, 814
BtgI	CCRYGG	1 cut(s)	909
BtsCI	GGATG	5 cut(s)	124, 625, 946, 973, 1000
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	261, 354
BveI	ACCTGC	1 cut(s)	448
Cac8I	GCNNGC	1 cut(s)	305
Cfr13I	GGNCC	3 cut(s)	51, 774, 813
CseI	GACGC	1 cut(s)	731
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	9 cut(s)	33, 53, 106, 206, 212, 295, 814, 842, 1013
CviKI_1	RGCY	9 cut(s)	33, 53, 106, 206, 212, 295, 814, 842, 1013
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	2 cut(s)	353, 905
DpnII	GATC	2 cut(s)	351, 903
DraI	TTTAAA	3 cut(s)	663, 723, 1074
Eam1104I	CTCTTC	4 cut(s)	94, 121, 371, 438
EarI	CTCTTC	4 cut(s)	94, 121, 371, 438
Eco130I	CCWWGG	4 cut(s)	936, 963, 990, 1053
Eco24I	GRGCYC	2 cut(s)	35, 108
Eco47I	GGWCC	1 cut(s)	774
Eco57I	CTGAAG	2 cut(s)	102, 660
EcoO109I	RGGNCCY	2 cut(s)	51, 813
EcoRII	CCWGG	1 cut(s)	290
EcoT14I	CCWWGG	4 cut(s)	936, 963, 990, 1053
EcoT38I	GRGCYC	2 cut(s)	35, 108
ErhI	CCWWGG	4 cut(s)	936, 963, 990, 1053
FaeI	CATG	1 cut(s)	217
FaiI	YATR	2 cut(s)	215, 1026
FatI	CATG	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	367
FokI	GGATG	5 cut(s)	111, 632, 953, 980, 1007
FriOI	GRGCYC	2 cut(s)	35, 108
Fsp4HI	GCNGC	1 cut(s)	367
GluI	GCNGC	1 cut(s)	367
GsaI	CCCAGC	1 cut(s)	822
HaeIII	GGCC	3 cut(s)	53, 212, 814
HapII	CCGG	1 cut(s)	772
HgaI	GACGC	1 cut(s)	731
Hin1II	CATG	1 cut(s)	217
HincII	GTYRAC	1 cut(s)	694
HindII	GTYRAC	1 cut(s)	694
HindIII	AAGCTT	1 cut(s)	840
HinfI	GANTC	8 cut(s)	147, 340, 464, 873, 917, 944, 971, 998
HpaII	CCGG	1 cut(s)	772
HphI	GGTGA	9 cut(s)	77, 100, 442, 463, 485, 556, 595, 925, 926
Hpy166II	GTNNAC	1 cut(s)	694
Hpy188I	TCNGA	4 cut(s)	30, 40, 171, 345
Hpy188III	TCNNGA	2 cut(s)	144, 772
Hpy8I	GTNNAC	1 cut(s)	694
Hpy99I	CGWCG	1 cut(s)	391
HpyAV	CCTTC	5 cut(s)	211, 541, 635, 843, 887
HpyCH4IV	ACGT	2 cut(s)	24, 1059
HpyCH4V	TGCA	5 cut(s)	366, 701, 766, 1031, 1083
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 292, 763
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	2 cut(s)	24, 1059
Hsp92II	CATG	1 cut(s)	217
Kpn2I	TCCGGA	1 cut(s)	771
Kzo9I	GATC	2 cut(s)	351, 903
LmnI	GCTCC	2 cut(s)	271, 291
Lsp1109I	GCAGC	1 cut(s)	378
LweI	GCATC	2 cut(s)	31, 610
MaeII	ACGT	2 cut(s)	24, 1059
MalI	GATC	2 cut(s)	353, 905
MboI	GATC	2 cut(s)	351, 903
MboII	GAAGA	6 cut(s)	108, 111, 256, 388, 455, 646
MhlI	GDGCHC	4 cut(s)	35, 108, 288, 759
MluCI	AATT	5 cut(s)	71, 139, 196, 371, 724
MlyI	GAGTC	1 cut(s)	473
MroI	TCCGGA	1 cut(s)	771
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	4 cut(s)	662, 681, 722, 1073
MspI	CCGG	1 cut(s)	772
MspR9I	CCNGG	1 cut(s)	292
Mva1269I	GAATGC	2 cut(s)	507, 612
MvaI	CCWGG	1 cut(s)	292
MwoI	GCNNNNNNNGC	3 cut(s)	50, 292, 763
NdeII	GATC	2 cut(s)	351, 903
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	3 cut(s)	6, 52, 815
NspV	TTCGAA	1 cut(s)	845
PaqCI	CACCTGC	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	1 cut(s)	311
PctI	GAATGC	2 cut(s)	507, 612
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	7 cut(s)	147, 340, 873, 917, 944, 971, 998
PflMI	CCANNNNNTGG	1 cut(s)	512
PkrI	GCNGC	1 cut(s)	368
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
Psp1406I	AACGTT	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	290
PspFI	CCCAGC	1 cut(s)	818
PspGI	CCWGG	1 cut(s)	290
PspN4I	GGNNCC	3 cut(s)	6, 52, 815
PspPI	GGNCC	3 cut(s)	51, 774, 813
PstI	CTGCAG	1 cut(s)	368
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SaqAI	TTAA	4 cut(s)	662, 681, 722, 1073
SatI	GCNGC	1 cut(s)	367
Sau3AI	GATC	2 cut(s)	351, 903
Sau96I	GGNCC	3 cut(s)	51, 774, 813
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	292
SduI	GDGCHC	4 cut(s)	35, 108, 288, 759
SfaNI	GCATC	2 cut(s)	31, 610
SfcI	CTRYAG	1 cut(s)	364
SfuI	TTCGAA	1 cut(s)	845
SinI	GGWCC	1 cut(s)	774
Sse9I	AATT	5 cut(s)	71, 139, 196, 371, 724
SsiI	CCGC	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	290
StyI	CCWWGG	4 cut(s)	936, 963, 990, 1053
TaiI	ACGT	2 cut(s)	27, 1062
TaqI	TCGA	1 cut(s)	845
TasI	AATT	5 cut(s)	71, 139, 196, 371, 724
TatI	WGTACW	1 cut(s)	236
TfiI	GAWTC	7 cut(s)	147, 340, 873, 917, 944, 971, 998
Tru1I	TTAA	4 cut(s)	662, 681, 722, 1073
Tru9I	TTAA	4 cut(s)	662, 681, 722, 1073
TscAI	CASTG	2 cut(s)	268, 361
TseI	GCWGC	1 cut(s)	366
TspDTI	ATGAA	3 cut(s)	113, 146, 230
TspRI	CASTG	2 cut(s)	268, 361
Van91I	CCANNNNNTGG	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	774
XapI	RAATTY	2 cut(s)	71, 724
XmnI	GAANNNNTTC	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.