AT3G52115

gamma response

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007401
Physical Location & Seq
Forward (+)
19326035 .. 19328379
2345 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52115.1

Sequence Viewer

Length: 1767 bp
ATGGGAGATGAAACTGTTGACGGTATCGAAGCCAAGTATATATCTGGTCTCAGTACTATAATGGTTGCTACAATTCAAGAAGCCAAGGATAGAATTTCTCAGATCGAGTATATTTTTTGTAGCCAGTTATTTCCAAATTTTCAATCCAAATCCAAAGCTTTTGAAAAAGTTTATTCAGAAGCTCGTCTTGCTGCTTGTGATACTTGGAAAGATAGAGAGAAAAGTTTGTTAGATCAGATTGAAGAGCTTAAGGTAGAGAATCAACAGATTAAGTCAGATAAGGAGAAGTTAGCTGAAGAACTTGGTAAAACTGCTTCTATGCCTCTTAGATTGACGAGTCTACAAGGCTACATCGATCATTTGAAAAAGAAGATGAAGAGTAGATCTAAGATGGTTGGTGATGCAAGAGATTTGTATTATAGGTTAGTTGAGTTGTTGCAGGTTAAGGGTTTGGATGAGCTTAGCGAAGATGGGATAAATATGATTGTTTCGGAAGTGAAGAGCCTTAAGATGAAGACTGAATTTCTTCAGGAGGAACTCTCAAAGAAGACATTGGTGACGGAGAATCTGCTGAAGAAACTGGAGTACTTGTCTACAGAAGCTGCAGATGGTGAAAGGAAGTTGAGCAGCGTTGAAGAAGAGAAACAAAGATTGAAGACTAGGTTGCAGGTTTTTGAGGAGAATGTCGGTAGACTTGAAGAGATACTTAGGCAAAAGACCGATGAGGTTGAGGAAGGAAAGACAGCTCTTGAGGTTTTGCAGGGTAAACTCAAATTGACCGAGAGGGAAATGTTGAATTGTAAACAAAAGATTGCAGATCATGAGAAAGAAAAGACAGTGGTTATGGGAAAAGCAAAGGATGATATGCAGGGCAGACACGGAAGCTACTTGGCTGACTTAGAAGCTTTACGTTGCCAGAGTGAAGAGAAATCATTTGAGTTAGCTATGGAGATAAAGAAAAATAAAGAACTCTCTCGTACTTGCAAAAAGTGGAAGTCCCAACATACTTTTCTCTGCAAAAGGTTTAATTTTACTCCTGACAGTGTTCTTCACCAAAGCAGCCTTGAGGATGAGAATAAAGAAATTGGTCAGCATGAGAAATCAGCAATCTCGAGTTATCTTGAAAGGAAACACTCAGAAACTGCTGAAGGAGCAGACAAAGTGAGAATTGGTACTGGCTCGAGTGGCAACAACTATGAGAAAGAGAGTATAATCAAAACAGTGCAGACACCTATCACTTCCATCTCACCAATTGTGCGGTCACCTGGTGCTGCAAAACCTCCACAGCTAAGCGGATTAAAGCGTCCAGCTTCCATTTGGAGAGACACAAGATCTCGTCAATCTCCTGGAGGACATGATCCTCATGATGATTTTCTAGATACTCCCATTGAGAATGTCAAAAGGGTCGCTGGGGAAGAAAAACATGTTCATGATGTTGCTAAGAAAGATGATTCAGACGACGAGACACAGGACATGAATCCTAAACCGAGTCCATCACGACAGCGAATTCAAATTGCAGAAACGAGTAAAAAGAGTTTCAAGCATGTGGAGTCAGTGAGGAAAAAAGCCGAGAGGGAGAATTTGAAAGGTATAGAATGTAAACAATGCAAGAAATTCTATGATGCTGTTCATCCTGAGAATGAAGGAAATGGTAACAAAAGCTTGAGATGTGAACATCATGAAGGTGTGTCGAGGCATCGTTACAGATACGCTCCTCCAATGACTCCTGAAGGGTTTTGGAACATCGGGTTTGAATCCGAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0006950 GO:0006974 GO:0007276 GO:0008150 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0019953 GO:0022414 GO:0032501 GO:0032504 GO:0033554 GO:0044703 GO:0048609 GO:0050896 GO:0051704 GO:0051716
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAE2

Protein Analysis

588

Amino Acids

67.23

Weight (kDa)

6.99

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 430, 658
AccI GTMKAC 3 cut(s) 340, 593, 691
AciI CCGC 2 cut(s) 1258, 1293
AclWI GGATC 1 cut(s) 1352
AcsI RAATTY 6 cut(s) 93, 136, 521, 1506, 1579, 1613
AcuI CTGAAG 5 cut(s) 315, 512, 593, 1167, 1749
AdeI CACNNNGTG 1 cut(s) 1268
AfaI GTAC 4 cut(s) 55, 587, 979, 1174
AflII CTTAAG 2 cut(s) 248, 506
AflIII ACRYGT 1 cut(s) 1423
AjnI CCWGG 2 cut(s) 1264, 1345
AjuI GAANNNNNNNTTGG 2 cut(s) 993, 1025
Alw26I GTCTC 3 cut(s) 53, 1317, 1457
AlwI GGATC 1 cut(s) 1352
AlwNI CAGNNNCTG 2 cut(s) 602, 1142
Ama87I CYCGRG 2 cut(s) 1111, 1180
ApeKI GCWGC 5 cut(s) 191, 602, 627, 1059, 1271
ApoI RAATTY 6 cut(s) 93, 136, 521, 1506, 1579, 1613
Asp700I GAANNNNTTC 1 cut(s) 525
AsuHPI GGTGA 6 cut(s) 410, 568, 623, 1043, 1239, 1254
AvaI CYCGRG 2 cut(s) 1111, 1180
BarI GAAGNNNNNNTAC 2 cut(s) 298, 330
BbsI GAAGAC 3 cut(s) 521, 554, 662
BbvI GCAGC 5 cut(s) 178, 589, 639, 1071, 1258
BccI CCATC 5 cut(s) 385, 464, 602, 1250, 1501
BciT130I CCWGG 2 cut(s) 1266, 1347
BcoDI GTCTC 3 cut(s) 53, 1317, 1457
BfaI CTAG 2 cut(s) 660, 1376
BfmI CTRYAG 2 cut(s) 594, 603
BfrI CTTAAG 2 cut(s) 248, 506
BfuAI ACCTGC 2 cut(s) 430, 658
BglII AGATCT 2 cut(s) 383, 1331
BisI GCNGC 5 cut(s) 192, 603, 628, 1060, 1272
BlpI GCTNAGC 2 cut(s) 461, 1289
BlsI GCNGC 5 cut(s) 193, 604, 629, 1061, 1273
BmcAI AGTACT 2 cut(s) 55, 587
Bme1390I CCNGG 2 cut(s) 1266, 1347
BmeT110I CYCGRG 2 cut(s) 1111, 1180
BmrFI CCNGG 2 cut(s) 1266, 1347
BmsI GCATC 3 cut(s) 391, 1612, 1705
BpiI GAAGAC 3 cut(s) 521, 554, 662
BplI GAGNNNNNCTC 2 cut(s) 524, 556
BpmI CTGGAG 2 cut(s) 602, 1368
Bpu1102I GCTNAGC 2 cut(s) 461, 1289
BpuEI CTTGAG 3 cut(s) 770, 1085, 1684
Bsa29I ATCGAT 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 84
BsaXI ACNNNNNCTCC 2 cut(s) 575, 605
Bse1I ACTGG 3 cut(s) 124, 585, 1180
BseBI CCWGG 2 cut(s) 1266, 1347
BseCI ATCGAT 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 4 cut(s) 460, 865, 1075, 1630
BseMII CTCAG 4 cut(s) 64, 113, 1149, 1626
BseNI ACTGG 3 cut(s) 124, 585, 1180
BseRI GAGGAG 2 cut(s) 692, 1704
BseXI GCAGC 5 cut(s) 178, 589, 639, 1071, 1258
BseYI CCCAGC 1 cut(s) 1409
BsgI GTGCAG 1 cut(s) 1244
BshVI ATCGAT 1 cut(s) 354
BsiHKCI CYCGRG 2 cut(s) 1111, 1180
BslFI GGGAC 1 cut(s) 982
BsmAI GTCTC 3 cut(s) 53, 1317, 1457
BsmFI GGGAC 1 cut(s) 982
Bso31I GGTCTC 1 cut(s) 53
BsoBI CYCGRG 2 cut(s) 1111, 1180
Bsp143I GATC 7 cut(s) 102, 232, 355, 383, 817, 1331, 1357
Bsp1720I GCTNAGC 2 cut(s) 461, 1289
BspACI CCGC 2 cut(s) 1258, 1293
BspCNI CTCAG 4 cut(s) 63, 112, 1148, 1627
BspDI ATCGAT 1 cut(s) 354
BspHI TCATGA 4 cut(s) 820, 1363, 1429, 1678
BspMAI CTGCAG 1 cut(s) 607
BspMI ACCTGC 2 cut(s) 430, 658
BspPI GGATC 1 cut(s) 1352
BspQI GCTCTTC 2 cut(s) 237, 494
BspTI CTTAAG 2 cut(s) 248, 506
BspTNI GGTCTC 1 cut(s) 53
BsrI ACTGG 3 cut(s) 124, 585, 1180
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 7 cut(s) 102, 232, 355, 383, 817, 1331, 1357
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 2 cut(s) 1266, 1347
Bst4CI ACNGT 5 cut(s) 16, 23, 838, 1043, 1222
Bst6I CTCTTC 6 cut(s) 237, 371, 494, 633, 693, 918
BstAFI CTTAAG 2 cut(s) 248, 506
BstEII GGTNACC 1 cut(s) 1260
BstF5I GGATG 4 cut(s) 460, 865, 1075, 1630
BstKTI GATC 7 cut(s) 105, 235, 358, 386, 820, 1334, 1360
BstMAI GTCTC 3 cut(s) 53, 1317, 1457
BstMBI GATC 7 cut(s) 102, 232, 355, 383, 817, 1331, 1357
BstMWI GCNNNNNNNGC 3 cut(s) 188, 1151, 1185
BstNI CCWGG 2 cut(s) 1266, 1347
BstNSI RCATGY 2 cut(s) 1427, 1547
BstPI GGTNACC 1 cut(s) 1260
BstSCI CCNGG 2 cut(s) 1264, 1345
BstSFI CTRYAG 2 cut(s) 594, 603
BstV1I GCAGC 5 cut(s) 178, 589, 639, 1071, 1258
BstV2I GAAGAC 3 cut(s) 521, 554, 662
BstX2I RGATCY 2 cut(s) 383, 1331
BstYI RGATCY 2 cut(s) 383, 1331
Bsu15I ATCGAT 1 cut(s) 354
BsuTUI ATCGAT 1 cut(s) 354
BtsCI GGATG 4 cut(s) 460, 865, 1075, 1630
BtsIMutI CAGTG 4 cut(s) 843, 1048, 1227, 1560
BveI ACCTGC 2 cut(s) 430, 658
CaiI CAGNNNCTG 2 cut(s) 602, 1142
CciI TCATGA 4 cut(s) 820, 1363, 1429, 1678
ClaI ATCGAT 1 cut(s) 354
CseI GACGC 1 cut(s) 1292
CsiI ACCWGGT 1 cut(s) 1264
Csp6I GTAC 4 cut(s) 54, 586, 978, 1173
CviAII CATG 9 cut(s) 821, 1094, 1355, 1364, 1424, 1430, 1474, 1544, 1679
CviQI GTAC 4 cut(s) 54, 586, 978, 1173
DpnI GATC 7 cut(s) 104, 234, 357, 385, 819, 1333, 1359
DpnII GATC 7 cut(s) 102, 232, 355, 383, 817, 1331, 1357
DraIII CACNNNGTG 1 cut(s) 1268
Eam1104I CTCTTC 6 cut(s) 237, 371, 494, 633, 693, 918
EarI CTCTTC 6 cut(s) 237, 371, 494, 633, 693, 918
Eco130I CCWWGG 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 53
Eco57I CTGAAG 5 cut(s) 315, 512, 593, 1167, 1749
Eco88I CYCGRG 2 cut(s) 1111, 1180
Eco91I GGTNACC 1 cut(s) 1260
EcoO65I GGTNACC 1 cut(s) 1260
EcoRI GAATTC 1 cut(s) 1506
EcoRII CCWGG 2 cut(s) 1264, 1345
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 9 cut(s) 824, 1097, 1358, 1367, 1427, 1433, 1477, 1547, 1682
FalI AAGNNNNNCTT 4 cut(s) 171, 203, 690, 722
FaqI GGGAC 1 cut(s) 982
FatI CATG 9 cut(s) 820, 1093, 1354, 1363, 1423, 1429, 1473, 1543, 1678
FblI GTMKAC 3 cut(s) 340, 593, 691
Fnu4HI GCNGC 5 cut(s) 192, 603, 628, 1060, 1272
FokI GGATG 4 cut(s) 467, 872, 1082, 1617
Fsp4HI GCNGC 5 cut(s) 192, 603, 628, 1060, 1272
FspBI CTAG 2 cut(s) 660, 1376
GluI GCNGC 5 cut(s) 192, 603, 628, 1060, 1272
GsaI CCCAGC 1 cut(s) 1413
GsuI CTGGAG 2 cut(s) 602, 1368
HgaI GACGC 1 cut(s) 1292
Hin1II CATG 9 cut(s) 824, 1097, 1358, 1367, 1427, 1433, 1477, 1547, 1682
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 3 cut(s) 156, 903, 1660
HinfI GANTC 9 cut(s) 259, 337, 565, 1451, 1477, 1489, 1550, 1723, 1754
HphI GGTGA 6 cut(s) 410, 568, 623, 1043, 1239, 1254
Hpy166II GTNNAC 8 cut(s) 19, 341, 594, 692, 767, 803, 1601, 1673
Hpy188I TCNGA 8 cut(s) 102, 178, 237, 277, 493, 1138, 1456, 1759
Hpy8I GTNNAC 8 cut(s) 19, 341, 594, 692, 767, 803, 1601, 1673
Hpy99I CGWCG 1 cut(s) 1463
HpyAV CCTTC 5 cut(s) 728, 1142, 1637, 1676, 1724
HpyCH4III ACNGT 5 cut(s) 16, 23, 838, 1043, 1222
HpyCH4IV ACGT 1 cut(s) 910
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 1151, 1185
HpySE526I ACGT 1 cut(s) 910
Hsp92II CATG 9 cut(s) 824, 1097, 1358, 1367, 1427, 1433, 1477, 1547, 1682
Kzo9I GATC 7 cut(s) 102, 232, 355, 383, 817, 1331, 1357
LguI GCTCTTC 2 cut(s) 237, 494
LmnI GCTCC 2 cut(s) 1151, 1717
Lsp1109I GCAGC 5 cut(s) 178, 589, 639, 1071, 1258
LweI GCATC 3 cut(s) 391, 1612, 1705
MabI ACCWGGT 1 cut(s) 1264
MaeI CTAG 2 cut(s) 660, 1376
MaeII ACGT 1 cut(s) 910
MaeIII GTNAC 4 cut(s) 556, 1260, 1652, 1700
MalI GATC 7 cut(s) 104, 234, 357, 385, 819, 1333, 1359
MboI GATC 7 cut(s) 102, 232, 355, 383, 817, 1331, 1357
MfeI CAATTG 1 cut(s) 1251
MflI RGATCY 2 cut(s) 383, 1331
MlyI GAGTC 4 cut(s) 346, 1498, 1559, 1717
MroXI GAANNNNTTC 1 cut(s) 525
MseI TTAA 6 cut(s) 249, 270, 444, 507, 1026, 1298
MslI CAYNNNNRTG 2 cut(s) 1428, 1683
MspCI CTTAAG 2 cut(s) 248, 506
MspR9I CCNGG 2 cut(s) 1266, 1347
MunI CAATTG 1 cut(s) 1251
MvaI CCWGG 2 cut(s) 1266, 1347
MwoI GCNNNNNNNGC 3 cut(s) 188, 1151, 1185
NdeII GATC 7 cut(s) 102, 232, 355, 383, 817, 1331, 1357
NlaIII CATG 9 cut(s) 824, 1097, 1358, 1367, 1427, 1433, 1477, 1547, 1682
NmeAIII GCCGAG 1 cut(s) 1594
NmuCI GTSAC 2 cut(s) 556, 1260
NspI RCATGY 2 cut(s) 1427, 1547
PaeR7I CTCGAG 2 cut(s) 1111, 1180
PagI TCATGA 4 cut(s) 820, 1363, 1429, 1678
PciI ACATGT 1 cut(s) 1423
PciSI GCTCTTC 2 cut(s) 237, 494
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 5 cut(s) 259, 565, 1451, 1477, 1754
PfoI TCCNGGA 1 cut(s) 1345
PkrI GCNGC 5 cut(s) 193, 604, 629, 1061, 1273
PleI GAGTC 4 cut(s) 345, 1497, 1558, 1717
PpsI GAGTC 4 cut(s) 345, 1497, 1558, 1717
PscI ACATGT 1 cut(s) 1423
Psp6I CCWGG 2 cut(s) 1264, 1345
PspEI GGTNACC 1 cut(s) 1260
PspFI CCCAGC 1 cut(s) 1409
PspGI CCWGG 2 cut(s) 1264, 1345
PspXI VCTCGAGB 1 cut(s) 1180
PstI CTGCAG 1 cut(s) 607
PstNI CAGNNNCTG 2 cut(s) 602, 1142
PsuI RGATCY 2 cut(s) 383, 1331
RsaI GTAC 4 cut(s) 55, 587, 979, 1174
RsaNI GTAC 4 cut(s) 54, 586, 978, 1173
RseI CAYNNNNRTG 2 cut(s) 1428, 1683
SapI GCTCTTC 2 cut(s) 237, 494
SaqAI TTAA 6 cut(s) 249, 270, 444, 507, 1026, 1298
SatI GCNGC 5 cut(s) 192, 603, 628, 1060, 1272
Sau3AI GATC 7 cut(s) 102, 232, 355, 383, 817, 1331, 1357
ScaI AGTACT 2 cut(s) 55, 587
SchI GAGTC 4 cut(s) 346, 1498, 1559, 1717
ScrFI CCNGG 2 cut(s) 1266, 1347
SexAI ACCWGGT 1 cut(s) 1264
SfaNI GCATC 3 cut(s) 391, 1612, 1705
SfcI CTRYAG 2 cut(s) 594, 603
Sfr274I CTCGAG 2 cut(s) 1111, 1180
SlaI CTCGAG 2 cut(s) 1111, 1180
SmiMI CAYNNNNRTG 2 cut(s) 1428, 1683
SmlI CTYRAG 7 cut(s) 248, 506, 749, 1064, 1111, 1180, 1663
SmoI CTYRAG 7 cut(s) 248, 506, 749, 1064, 1111, 1180, 1663
SsiI CCGC 2 cut(s) 1258, 1293
SspMI CTAG 2 cut(s) 660, 1376
StyD4I CCNGG 2 cut(s) 1264, 1345
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 5 cut(s) 16, 23, 838, 1043, 1222
TaiI ACGT 1 cut(s) 913
TaqI TCGA 6 cut(s) 27, 105, 354, 1112, 1181, 1691
TaqII GACCGA 2 cut(s) 734, 794
TatI WGTACW 2 cut(s) 53, 585
TfiI GAWTC 5 cut(s) 259, 565, 1451, 1477, 1754
Tru1I TTAA 6 cut(s) 249, 270, 444, 507, 1026, 1298
Tru9I TTAA 6 cut(s) 249, 270, 444, 507, 1026, 1298
TscAI CASTG 4 cut(s) 843, 1048, 1227, 1560
TseFI GTSAC 2 cut(s) 556, 1260
TseI GCWGC 5 cut(s) 191, 602, 627, 1059, 1271
Tsp45I GTSAC 2 cut(s) 556, 1260
TspDTI ATGAA 8 cut(s) 24, 389, 527, 1418, 1490, 1619, 1656, 1695
TspGWI ACGGA 2 cut(s) 575, 894
TspRI CASTG 4 cut(s) 843, 1048, 1227, 1560
Vha464I CTTAAG 2 cut(s) 248, 506
XapI RAATTY 6 cut(s) 93, 136, 521, 1506, 1579, 1613
XbaI TCTAGA 1 cut(s) 1375
XceI RCATGY 2 cut(s) 1427, 1547
XcmI CCANNNNNNNNNTGG 1 cut(s) 1314
XhoI CTCGAG 2 cut(s) 1111, 1180
XmiI GTMKAC 3 cut(s) 340, 593, 691
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 2 cut(s) 660, 1376
ZrmI AGTACT 2 cut(s) 55, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.