pycom07g00550

Protein gamma response

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0007401
Physical Location & Seq
Reverse (-)
517760 .. 519661
1902 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g00550.1

Sequence Viewer

Length: 1455 bp
ATGCTTAAGCAGAAGTCTACGGAAGTAGATAAGGGAATGGAATTGGAGAGTAAGTTGCTCGGAGTGATTCAATCCAAAGACGCTGTCATTATGGATAAGGAAAAACAACTGAAAGAGAGTGAAGAAAGTAGAAACATGCTTCTTGCTAAATTAAGTGATCTTGAAAATAGAGTTGATGAACTCCAAGAGGAGCTCGGGGAAAAGATTAACCAAGTAGCCAAAAGAAATGAGCTTGAAGAGAATTTATTTCGAAAAGTTGAGCATCAGTCTTCTGAGATCATGAATAAAGAAAAGCTTTTGAATGATCAAGAAGAAGAGAAAAAACTTCTCAGGGCCAAATTGGAAATTTTGGAAGAAAATGTTAGTCAACTCCAAAAGGAGCTCCTTACAAAGAACAATGAAGTGGAGAATTATCTGAGGGAGAAAAAACAGTTTCTAGCCAAAGTAACTAGTTTAGAGGAAAAAGTTGATGAACTAGGCATGGCTGGCGAAGTGGCCAAAAGACGGGATTCATGTGAAAAGTTACATCAACAGATTGAATCAATGACCTCGGGTTTACAGGCTGAGAGGAAGAAGTACACAGATCTTATTGGTGCTTACAAAAACCTGAAATCTCAGCACAAGTATCTCCGCACAAAGCTTGGTCTTACAAGGGAGAATATGCTACCCCAGAATAAGTTGGAAGATAGAAGTGATTTGTTGAGATACGATCAAAATCCATCAACTTCACATGATCTTGTCGAGAAAAATCAGAATGCTTCTGCGTCAACTTTATGCACAAAAAAAGTCAGGAATGAAATCAGTTGTAACAATAACTTGGAGGAGGATGTGAAAGGAGGCAAGCCAATTCAAGCAGCTAGTCCTATCTCTTCTACTTCCTTCTTCCCCATTGCACAAAAATGCCCTCCCACCTCAAAATCTGCCTCAGTAGCTGGGAGAAAACGGCCTGCTTCCAGCTGGGTGGATACTAGGAGGCGTCAAGGCCAAGATGGGCCTGACCCACACGATGATTTTCTTGATACCCCACTTGAGAACATCAGAGGAAACTTGAATAAAGCCACAAAGGAACAAGTTCCTGATCGTCCAGTTCCAGTTCCAGCTCCAAATGACATGAATCTAGATAGCTCAGATGATGAAACACAGGATGTTAACGCTGTAGTTAGGCCACAGAAGCAGCAGATGCCATCTCCAGTGGCCGGTAAAAATGGTTTCAAGTTTGTAGAACCTGTAAGAAAGAAAGCTGAGCGGGAAAATTTGAAAGGAGTTGAATGCAAGCAGTGCAAAAAGTTCTATGACGCTGTCCTTCCCAATGAAGGCGGTGGTAAGGACACCGATAATAATAAGCAAAATTTTCGCTGTGAGCACCATGAAGGTGTTTCTCGTCATCGGTATAGGTATGCTCCCCCTCTTACTCCAGAAGGGTTTTGGAATATTGGATTTGAATCTGAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0006950 GO:0006974 GO:0007276 GO:0008150 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0019953 GO:0022414 GO:0032501 GO:0032504 GO:0033554 GO:0044703 GO:0048609 GO:0050896 GO:0051704 GO:0051716
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAE2

Protein Analysis

485

Amino Acids

55.21

Weight (kDa)

6.53

Isoelectric Point (pI)

56.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1246
AccI GTMKAC 1 cut(s) 17
AciI CCGC 3 cut(s) 631, 1246, 1317
AcoI YGGCCR 2 cut(s) 495, 1194
AcsI RAATTY 4 cut(s) 241, 345, 1252, 1348
AcyI GRCGYC 1 cut(s) 976
AfaI GTAC 1 cut(s) 578
AfiI CCNNNNNNNGG 3 cut(s) 504, 1196, 1313
AflII CTTAAG 1 cut(s) 5
AhlI ACTAGT 1 cut(s) 449
Alw21I GWGCWC 3 cut(s) 195, 384, 1365
AlwNI CAGNNNCTG 1 cut(s) 932
Ama87I CYCGRG 2 cut(s) 194, 550
AoxI GGCC 7 cut(s) 333, 495, 944, 982, 992, 1163, 1194
ApeKI GCWGC 2 cut(s) 854, 1174
ApoI RAATTY 4 cut(s) 241, 345, 1252, 1348
ArsI GACNNNNNNTTYG 2 cut(s) 69, 101
Asp700I GAANNNNTTC 1 cut(s) 1071
AspS9I GGNCC 2 cut(s) 333, 992
AsuII TTCGAA 1 cut(s) 250
AvaI CYCGRG 2 cut(s) 194, 550
BalI TGGCCA 1 cut(s) 497
BanII GRGCYC 2 cut(s) 195, 384
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 3 cut(s) 195, 384, 1365
BbvI GCAGC 2 cut(s) 866, 1186
BccI CCATC 3 cut(s) 727, 983, 1192
BceAI ACGGC 1 cut(s) 959
BcgI CGANNNNNNTGC 2 cut(s) 1334, 1368
BciVI GTATCC 1 cut(s) 958
BclI TGATCA 1 cut(s) 304
BcuI ACTAGT 1 cut(s) 449
BfaI CTAG 6 cut(s) 437, 450, 476, 858, 969, 1118
BfmI CTRYAG 1 cut(s) 1155
BfrI CTTAAG 1 cut(s) 5
BfuI GTATCC 1 cut(s) 958
BglII AGATCT 1 cut(s) 583
BisI GCNGC 2 cut(s) 855, 1175
BlpI GCTNAGC 1 cut(s) 1242
BlsI GCNGC 2 cut(s) 856, 1176
BmeT110I CYCGRG 2 cut(s) 194, 550
BmgT120I GGNCC 2 cut(s) 333, 992
BmsI GCATC 2 cut(s) 271, 1170
BpiI GAAGAC 1 cut(s) 261
BpmI CTGGAG 2 cut(s) 1173, 1398
Bpu1102I GCTNAGC 1 cut(s) 1242
Bpu14I TTCGAA 1 cut(s) 250
BpuEI CTTGAG 1 cut(s) 1049
BsaBI GATNNNNATC 2 cut(s) 714, 1441
BsaHI GRCGYC 1 cut(s) 976
BsaJI CCNNGG 1 cut(s) 549
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 3 cut(s) 504, 1196, 1313
Bse118I RCCGGY 1 cut(s) 1196
Bse1I ACTGG 3 cut(s) 1085, 1091, 1190
Bse3DI GCAATG 1 cut(s) 888
Bse8I GATNNNNATC 2 cut(s) 714, 1441
BseDI CCNNGG 1 cut(s) 549
BseGI GGATG 2 cut(s) 832, 1150
BseJI GATNNNNATC 2 cut(s) 714, 1441
BseLI CCNNNNNNNGG 3 cut(s) 504, 1196, 1313
BseMI GCAATG 1 cut(s) 888
BseMII CTCAG 8 cut(s) 264, 343, 407, 555, 629, 939, 1140, 1233
BseNI ACTGG 3 cut(s) 1085, 1091, 1190
BseRI GAGGAG 2 cut(s) 203, 836
BseXI GCAGC 2 cut(s) 866, 1186
BseYI CCCAGC 2 cut(s) 932, 957
BshFI GGCC 7 cut(s) 335, 497, 946, 984, 994, 1165, 1196
BsiHKAI GWGCWC 3 cut(s) 195, 384, 1365
BsiHKCI CYCGRG 2 cut(s) 194, 550
BsiSI CCGG 1 cut(s) 1197
BslI CCNNNNNNNGG 3 cut(s) 504, 1196, 1313
BsmI GAATGC 2 cut(s) 760, 1274
BsnI GGCC 7 cut(s) 335, 497, 946, 984, 994, 1165, 1196
BsoBI CYCGRG 2 cut(s) 194, 550
Bsp119I TTCGAA 1 cut(s) 250
Bsp1286I GDGCHC 3 cut(s) 195, 384, 1365
Bsp143I GATC 7 cut(s) 157, 276, 304, 583, 709, 733, 1078
Bsp1720I GCTNAGC 1 cut(s) 1242
BspACI CCGC 3 cut(s) 631, 1246, 1317
BspANI GGCC 7 cut(s) 335, 497, 946, 984, 994, 1165, 1196
BspCNI CTCAG 8 cut(s) 265, 342, 408, 556, 628, 938, 1139, 1234
BspHI TCATGA 1 cut(s) 279
BspT104I TTCGAA 1 cut(s) 250
BspTI CTTAAG 1 cut(s) 5
BsrBI CCGCTC 1 cut(s) 1246
BsrDI GCAATG 1 cut(s) 888
BsrFI RCCGGY 1 cut(s) 1196
BsrI ACTGG 3 cut(s) 1085, 1091, 1190
BssAI RCCGGY 1 cut(s) 1196
BssECI CCNNGG 1 cut(s) 549
BssMI GATC 7 cut(s) 157, 276, 304, 583, 709, 733, 1078
BssNI GRCGYC 1 cut(s) 976
Bst4CI ACNGT 1 cut(s) 432
Bst6I CTCTTC 3 cut(s) 231, 309, 874
BstACI GRCGYC 1 cut(s) 976
BstAFI CTTAAG 1 cut(s) 5
BstAPI GCANNNNNTGC 2 cut(s) 1180, 1278
BstBI TTCGAA 1 cut(s) 250
BstC8I GCNNGC 4 cut(s) 487, 842, 948, 1274
BstDEI CTNAG 8 cut(s) 273, 329, 416, 564, 615, 925, 1126, 1242
BstF5I GGATG 2 cut(s) 832, 1150
BstKTI GATC 7 cut(s) 160, 279, 307, 586, 712, 736, 1081
BstMBI GATC 7 cut(s) 157, 276, 304, 583, 709, 733, 1078
BstMWI GCNNNNNNNGC 5 cut(s) 486, 929, 1171, 1180, 1278
BstNSI RCATGY 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 1155
BstV1I GCAGC 2 cut(s) 866, 1186
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 583
BstXI CCANNNNNNTGG 1 cut(s) 961
BstYI RGATCY 1 cut(s) 583
BsuI GTATCC 1 cut(s) 958
BsuRI GGCC 7 cut(s) 335, 497, 946, 984, 994, 1165, 1196
BtsCI GGATG 2 cut(s) 832, 1150
BtsI GCAGTG 1 cut(s) 1283
BtsIMutI CAGTG 2 cut(s) 1197, 1283
Cac8I GCNNGC 4 cut(s) 487, 842, 948, 1274
CaiI CAGNNNCTG 1 cut(s) 932
CciI TCATGA 1 cut(s) 279
Cfr10I RCCGGY 1 cut(s) 1196
Cfr13I GGNCC 2 cut(s) 333, 992
CseI GACGC 4 cut(s) 89, 753, 965, 1304
Csp6I GTAC 1 cut(s) 577
CviAII CATG 7 cut(s) 136, 280, 481, 513, 731, 1111, 1367
CviQI GTAC 1 cut(s) 577
DdeI CTNAG 8 cut(s) 273, 329, 416, 564, 615, 925, 1126, 1242
DpnI GATC 7 cut(s) 159, 278, 306, 585, 711, 735, 1080
DpnII GATC 7 cut(s) 157, 276, 304, 583, 709, 733, 1078
EaeI YGGCCR 2 cut(s) 495, 1194
Eam1104I CTCTTC 3 cut(s) 231, 309, 874
EarI CTCTTC 3 cut(s) 231, 309, 874
Ecl136II GAGCTC 2 cut(s) 193, 382
Eco24I GRGCYC 2 cut(s) 195, 384
Eco53kI GAGCTC 2 cut(s) 193, 382
Eco88I CYCGRG 2 cut(s) 194, 550
EcoICRI GAGCTC 2 cut(s) 193, 382
EcoT38I GRGCYC 2 cut(s) 195, 384
FaeI CATG 7 cut(s) 139, 283, 484, 516, 734, 1114, 1370
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FatI CATG 7 cut(s) 135, 279, 480, 512, 730, 1110, 1366
FauI CCCGC 1 cut(s) 1239
FbaI TGATCA 1 cut(s) 304
FblI GTMKAC 1 cut(s) 17
Fnu4HI GCNGC 2 cut(s) 855, 1175
FokI GGATG 2 cut(s) 839, 1157
FriOI GRGCYC 2 cut(s) 195, 384
Fsp4HI GCNGC 2 cut(s) 855, 1175
FspBI CTAG 6 cut(s) 437, 450, 476, 858, 969, 1118
GluI GCNGC 2 cut(s) 855, 1175
GsaI CCCAGC 2 cut(s) 936, 961
GsuI CTGGAG 2 cut(s) 1173, 1398
HaeIII GGCC 7 cut(s) 335, 497, 946, 984, 994, 1165, 1196
HapII CCGG 1 cut(s) 1197
HgaI GACGC 4 cut(s) 89, 753, 965, 1304
Hin1I GRCGYC 1 cut(s) 976
Hin1II CATG 7 cut(s) 139, 283, 484, 516, 734, 1114, 1370
HincII GTYRAC 3 cut(s) 368, 768, 1150
HindII GTYRAC 3 cut(s) 368, 768, 1150
HindIII AAGCTT 2 cut(s) 293, 638
HinfI GANTC 5 cut(s) 67, 509, 539, 1114, 1442
HpaI GTTAAC 1 cut(s) 1150
HpaII CCGG 1 cut(s) 1197
Hpy166II GTNNAC 6 cut(s) 18, 368, 557, 579, 768, 1150
Hpy188I TCNGA 7 cut(s) 62, 274, 417, 753, 1040, 1129, 1447
Hpy188III TCNNGA 9 cut(s) 161, 280, 308, 742, 790, 1016, 1076, 1118, 1415
Hpy8I GTNNAC 6 cut(s) 18, 368, 557, 579, 768, 1150
HpyAV CCTTC 5 cut(s) 889, 1307, 1313, 1364, 1412
HpyCH4III ACNGT 1 cut(s) 432
HpyCH4V TGCA 4 cut(s) 777, 893, 1272, 1281
HpyF10VI GCNNNNNNNGC 5 cut(s) 486, 929, 1171, 1180, 1278
HpyF3I CTNAG 8 cut(s) 273, 329, 416, 564, 615, 925, 1126, 1242
Hsp92I GRCGYC 1 cut(s) 976
Hsp92II CATG 7 cut(s) 139, 283, 484, 516, 734, 1114, 1370
Ksp22I TGATCA 1 cut(s) 304
KspAI GTTAAC 1 cut(s) 1150
Kzo9I GATC 7 cut(s) 157, 276, 304, 583, 709, 733, 1078
LmnI GCTCC 5 cut(s) 190, 379, 387, 1105, 1405
Lsp1109I GCAGC 2 cut(s) 866, 1186
LweI GCATC 2 cut(s) 271, 1170
MaeI CTAG 6 cut(s) 437, 450, 476, 858, 969, 1118
MaeIII GTNAC 3 cut(s) 445, 522, 806
MalI GATC 7 cut(s) 159, 278, 306, 585, 711, 735, 1080
MbiI CCGCTC 1 cut(s) 1246
MboI GATC 7 cut(s) 157, 276, 304, 583, 709, 733, 1078
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 3 cut(s) 195, 384, 1365
MlsI TGGCCA 1 cut(s) 497
MluCI AATT 9 cut(s) 41, 149, 241, 338, 345, 409, 846, 1252, 1348
MluNI TGGCCA 1 cut(s) 497
MmeI TCCRAC 1 cut(s) 660
Mox20I TGGCCA 1 cut(s) 497
MroXI GAANNNNTTC 1 cut(s) 1071
MscI TGGCCA 1 cut(s) 497
MseI TTAA 4 cut(s) 6, 152, 207, 1149
MslI CAYNNNNRTG 2 cut(s) 898, 1371
Msp20I TGGCCA 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 957
MspCI CTTAAG 1 cut(s) 5
MspI CCGG 1 cut(s) 1197
Mva1269I GAATGC 2 cut(s) 760, 1274
MwoI GCNNNNNNNGC 5 cut(s) 486, 929, 1171, 1180, 1278
NdeII GATC 7 cut(s) 157, 276, 304, 583, 709, 733, 1078
NlaIII CATG 7 cut(s) 139, 283, 484, 516, 734, 1114, 1370
NspI RCATGY 1 cut(s) 139
NspV TTCGAA 1 cut(s) 250
PagI TCATGA 1 cut(s) 279
PctI GAATGC 2 cut(s) 760, 1274
PdmI GAANNNNTTC 1 cut(s) 1071
PfeI GAWTC 5 cut(s) 67, 509, 539, 1114, 1442
PflFI GACNNNGTC 2 cut(s) 83, 1298
PkrI GCNGC 2 cut(s) 856, 1176
Psp124BI GAGCTC 2 cut(s) 195, 384
PspFI CCCAGC 2 cut(s) 932, 957
PspPI GGNCC 2 cut(s) 333, 992
PstNI CAGNNNCTG 1 cut(s) 932
PsuI RGATCY 1 cut(s) 583
PsyI GACNNNGTC 2 cut(s) 83, 1298
PvuII CAGCTG 1 cut(s) 957
RsaI GTAC 1 cut(s) 578
RsaNI GTAC 1 cut(s) 577
RseI CAYNNNNRTG 2 cut(s) 898, 1371
SacI GAGCTC 2 cut(s) 195, 384
SaqAI TTAA 4 cut(s) 6, 152, 207, 1149
SatI GCNGC 2 cut(s) 855, 1175
Sau3AI GATC 7 cut(s) 157, 276, 304, 583, 709, 733, 1078
Sau96I GGNCC 2 cut(s) 333, 992
SduI GDGCHC 3 cut(s) 195, 384, 1365
SfaNI GCATC 2 cut(s) 271, 1170
SfcI CTRYAG 1 cut(s) 1155
SfuI TTCGAA 1 cut(s) 250
SmiMI CAYNNNNRTG 2 cut(s) 898, 1371
SmlI CTYRAG 2 cut(s) 5, 1028
SmoI CTYRAG 2 cut(s) 5, 1028
SpeI ACTAGT 1 cut(s) 449
Sse9I AATT 9 cut(s) 41, 149, 241, 338, 345, 409, 846, 1252, 1348
SsiI CCGC 3 cut(s) 631, 1246, 1317
SspI AATATT 1 cut(s) 1432
SspMI CTAG 6 cut(s) 437, 450, 476, 858, 969, 1118
SstI GAGCTC 2 cut(s) 195, 384
TaaI ACNGT 1 cut(s) 432
TaqI TCGA 2 cut(s) 250, 741
TasI AATT 9 cut(s) 41, 149, 241, 338, 345, 409, 846, 1252, 1348
TatI WGTACW 1 cut(s) 576
TfiI GAWTC 5 cut(s) 67, 509, 539, 1114, 1442
Tru1I TTAA 4 cut(s) 6, 152, 207, 1149
Tru9I TTAA 4 cut(s) 6, 152, 207, 1149
TscAI CASTG 2 cut(s) 1197, 1283
TseI GCWGC 2 cut(s) 854, 1174
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 2 cut(s) 1197, 1283
Tth111I GACNNNGTC 2 cut(s) 83, 1298
Vha464I CTTAAG 1 cut(s) 5
XapI RAATTY 4 cut(s) 241, 345, 1252, 1348
XbaI TCTAGA 1 cut(s) 1117
XceI RCATGY 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 1 cut(s) 1422
XmiI GTMKAC 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 1071
XspI CTAG 6 cut(s) 437, 450, 476, 858, 969, 1118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.