Rh1DG007700

Protein gamma response

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0007401
Physical Location & Seq
Reverse (-)
1065702 .. 1069602
3901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG007700.1

Sequence Viewer

Length: 1905 bp
ATGGAGGAGACTACCACACAAATTTGTTTCCCTATTGATACTCAATCTCCTGATATCAAGCTTGCTACTCTCCTGCTTGCTACAATTCAGGAAGCTAAAGACAGAATTCAGGAAACCAAAGACCAGGTTTACCAGATCGAATATGTCTTCCTTGCTCAGCTATACCCCTTATTACAATCCAAGTCCGAAACTCTCCAGAAATTTCAAGATGAGTGGAAATCCAAGGAAGCTAATCTATTGCTTCTAATTGAAACACTTCGAGCTGAAAACGAACTAACCATTGAGGAGAACCGCTCACTCAAGGTTGGCAGGGAAAAGATGTTCAGAGAAAAGGAGGACATTGTAAACCAACTGCGAGATGAAGTGACAGGCCTACAGCTAAGGAGTGATGAGCTGGAACAAACGCTTGACCACAAGTCTAAGGAAGCCGATGAGGGAATGGAATTGCGGAGTAAGTTGCTCCAAGAGGTTGGATTGAAAGACAGTGTCATTGTGAGTAAGGAAAAGGAACTGAAAGAGAGTGAAGAAAGTAGAAATGTGCTTTCTGCGAAAGTGAGTGATCTTGAAAAAAGAGCTGATGAGCTCAAACAAAATCTGTTCAAGAAGATTGAGTTACAAGCTTCTGAGATCGTGAACAATGACAAGCTTTTGAAGTATCGGGAAGAAGAGAAAAAACTAATGTTGGCCAAATTGAAAAATGTGGAAGAAAATGTTAGCCAACTCCAGAAGGAGCTCCTAACAAAGAATGAAGAAGTGGAAGATTGTGCAAGAGAGAAAAAACTTCTTCTGAGAAAAATGACTGGTTTAGAGGAGAAAGTTACTGAGCTACAAGGGGATCTCAGAGGCAGGGCCGGTGAAGCGGCCAAAAGAAGGGGCTCGACTGAAAATTTACACCAGCAGGTTGAATCAATAACCGCAGATTTACTGACCGAGAGGAAGAAGTACGGAGAACTTACTGCTGCTTACAAAAGTCTAAAATCTCAGCACACATATCTCCGCAGCAAATATGGTCTTACCCAGGAGAATATGCTCCCCCATAATAAACTGGAAGACGAAAGTGATTTATTGAGAAATGATCAGAATCCATCAACTTTCCATGATCTTGAAGATAAAAATCAACATGCTTCTCCAGCTGCTTGTAACATAAAGAAAATGAAGAATGAAATCAGTTTTAACAATAACTTGAATGAGGGCAAAGTACAAAAACCAATTCAAGCAACAAGTCCTTTCTCTTCTACTTCTGTTTCACCCAAATGTCCTTCCACCGTAAAATCTGCTCCAGTGGCTGGTAGAAAGCGGTCTGCATCGTCCTGGATAGACACGAGATCCCGCCAAGGCCAAAATGGGACTGACCCACACGATGATTTTCTTGACACCCCGATTGAGAATGTAAGAGCAAACTTGCATAGATCAACAAAGGAAAAAGTTACTGATCTTCCAGTTCCAGTTCAAAATGACTCAAATTTAGGTAGCTCTGATGATGAAACACAGGATGTGACTGCTGATCATCCTCGGCTACCAAAGCAGCATATGCCAGTTACAGTGGCTGGCAAAAATGGTTTCAAGTATGTGGAACCTGTAAGAAAGAGGGCTGAGCGGGAAAATTTGAAAGGAGTTGAATGTAAACAGTGCAAAAAGTTTTATGATGCTGTTCTTCCAGATGATGGTGGCAGGGACAATGATAATAATAAGCATGATTTCCGCTGTGAGCATCATGAAGGTGTTTCTCGACACAGGAGCATAGGATCGGGGAAATGTCCCTATTACTGTATTAATGGAGGTTGTCAGCTTGTAGTTTGGTCTCTGGGAATTCAAACTGGTCTTTGGCACCTATGGCCTATGGTCATCGGCGAGTGGAACTCACTTATGCTTGTGAAACCATGTTTATCTTTGCTATTATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0006950 GO:0006974 GO:0007276 GO:0008150 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0019953 GO:0022414 GO:0032501 GO:0032504 GO:0033554 GO:0044703 GO:0048609 GO:0050896 GO:0051704 GO:0051716
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAE2

Protein Analysis

634

Amino Acids

72.35

Weight (kDa)

6.11

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 889
AccB1I GGYRCC 1 cut(s) 1827
AccB7I CCANNNNNTGG 2 cut(s) 1286, 1664
AccBSI CCGCTC 2 cut(s) 294, 1597
AciI CCGC 9 cut(s) 292, 448, 860, 915, 997, 1297, 1330, 1597, 1702
AclWI GGATC 3 cut(s) 843, 1320, 1753
AcoI YGGCCR 2 cut(s) 684, 861
AcsI RAATTY 7 cut(s) 21, 105, 200, 886, 1462, 1603, 1809
AfaI GTAC 2 cut(s) 944, 1200
AfiI CCNNNNNNNGG 3 cut(s) 870, 1286, 1664
AhdI GACNNNNNGTC 1 cut(s) 415
AjnI CCWGG 3 cut(s) 123, 1017, 1310
AloI GAACNNNNNNTCC 2 cut(s) 305, 337
Alw21I GWGCWC 2 cut(s) 585, 735
Alw26I GTCTC 2 cut(s) 2, 1806
AlwI GGATC 3 cut(s) 843, 1320, 1753
AlwNI CAGNNNCTG 2 cut(s) 1286, 1547
AoxI GGCC 6 cut(s) 370, 684, 849, 861, 1336, 1835
ApeKI GCWGC 4 cut(s) 959, 999, 1133, 1525
ApoI RAATTY 7 cut(s) 21, 105, 200, 886, 1462, 1603, 1809
AseI ATTAAT 1 cut(s) 1773
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 849
AsuHPI GGTGA 2 cut(s) 866, 1239
BalI TGGCCA 1 cut(s) 686
BanI GGYRCC 1 cut(s) 1827
BanII GRGCYC 3 cut(s) 585, 735, 878
BauI CACGAG 1 cut(s) 1321
BbsI GAAGAC 2 cut(s) 139, 1056
Bbv12I GWGCWC 2 cut(s) 585, 735
BbvI GCAGC 4 cut(s) 946, 1011, 1120, 1537
BccI CCATC 2 cut(s) 1093, 1658
BciT130I CCWGG 3 cut(s) 125, 1019, 1312
BclI TGATCA 2 cut(s) 1075, 1504
BcoDI GTCTC 2 cut(s) 2, 1806
BfaI CTAG 1 cut(s) 1903
BfmI CTRYAG 1 cut(s) 374
BfuAI ACCTGC 1 cut(s) 889
BisI GCNGC 5 cut(s) 861, 960, 1000, 1134, 1526
BlpI GCTNAGC 2 cut(s) 156, 1593
BlsI GCNGC 5 cut(s) 862, 961, 1001, 1135, 1527
Bme1390I CCNGG 3 cut(s) 125, 1019, 1312
BmeRI GACNNNNNGTC 1 cut(s) 415
BmgT120I GGNCC 1 cut(s) 849
BmiI GGNNCC 2 cut(s) 1575, 1829
BmrFI CCNGG 3 cut(s) 125, 1019, 1312
BmsI GCATC 3 cut(s) 1313, 1636, 1720
BpiI GAAGAC 2 cut(s) 139, 1056
BplI GAGNNNNNCTC 4 cut(s) 278, 310, 1844, 1876
BpmI CTGGAG 4 cut(s) 179, 707, 1113, 1263
Bpu10I CCTNAGC 1 cut(s) 380
Bpu1102I GCTNAGC 2 cut(s) 156, 1593
BpuEI CTTGAG 1 cut(s) 284
BsaBI GATNNNNATC 2 cut(s) 1080, 1113
BsaI GGTCTC 1 cut(s) 1806
BsaJI CCNNGG 4 cut(s) 222, 1017, 1333, 1511
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bsc4I CCNNNNNNNGG 3 cut(s) 870, 1286, 1664
Bse118I RCCGGY 1 cut(s) 851
Bse1I ACTGG 7 cut(s) 805, 1050, 1280, 1439, 1445, 1535, 1822
Bse8I GATNNNNATC 2 cut(s) 1080, 1113
BseBI CCWGG 3 cut(s) 125, 1019, 1312
BseDI CCNNGG 4 cut(s) 222, 1017, 1333, 1511
BseGI GGATG 2 cut(s) 1498, 1507
BseJI GATNNNNATC 2 cut(s) 1080, 1113
BseLI CCNNNNNNNGG 3 cut(s) 870, 1286, 1664
BseMII CTCAG 7 cut(s) 170, 615, 779, 813, 853, 995, 1584
BseNI ACTGG 7 cut(s) 805, 1050, 1280, 1439, 1445, 1535, 1822
BseRI GAGGAG 3 cut(s) 20, 299, 824
BseXI GCAGC 4 cut(s) 946, 1011, 1120, 1537
BshFI GGCC 6 cut(s) 372, 686, 851, 863, 1338, 1837
BshNI GGYRCC 1 cut(s) 1827
BsiHKAI GWGCWC 2 cut(s) 585, 735
BsiSI CCGG 1 cut(s) 852
BslFI GGGAC 3 cut(s) 1360, 1688, 1743
BslI CCNNNNNNNGG 3 cut(s) 870, 1286, 1664
BsmAI GTCTC 2 cut(s) 2, 1806
BsmFI GGGAC 3 cut(s) 1360, 1688, 1743
BsnI GGCC 6 cut(s) 372, 686, 851, 863, 1338, 1837
Bso31I GGTCTC 1 cut(s) 1806
Bsp1286I GDGCHC 3 cut(s) 585, 735, 878
Bsp1720I GCTNAGC 2 cut(s) 156, 1593
BspACI CCGC 9 cut(s) 292, 448, 860, 915, 997, 1297, 1330, 1597, 1702
BspANI GGCC 6 cut(s) 372, 686, 851, 863, 1338, 1837
BspCNI CTCAG 7 cut(s) 169, 616, 780, 814, 852, 994, 1585
BspHI TCATGA 1 cut(s) 1714
BspLI GGNNCC 2 cut(s) 1575, 1829
BspMI ACCTGC 1 cut(s) 889
BspPI GGATC 3 cut(s) 843, 1320, 1753
BspT107I GGYRCC 1 cut(s) 1827
BspTNI GGTCTC 1 cut(s) 1806
BsrBI CCGCTC 2 cut(s) 294, 1597
BsrFI RCCGGY 1 cut(s) 851
BsrI ACTGG 7 cut(s) 805, 1050, 1280, 1439, 1445, 1535, 1822
BssAI RCCGGY 1 cut(s) 851
BssECI CCNNGG 4 cut(s) 222, 1017, 1333, 1511
BssSI CACGAG 1 cut(s) 1321
BssT1I CCWWGG 2 cut(s) 222, 1333
Bst2BI CACGAG 1 cut(s) 1321
Bst2UI CCWGG 3 cut(s) 125, 1019, 1312
Bst4CI ACNGT 5 cut(s) 485, 1267, 1543, 1629, 1769
Bst6I CTCTTC 2 cut(s) 660, 1237
BstAPI GCANNNNNTGC 1 cut(s) 1531
BstC8I GCNNGC 3 cut(s) 63, 78, 1549
BstDEI CTNAG 9 cut(s) 156, 380, 420, 624, 788, 822, 839, 981, 1593
BstF5I GGATG 2 cut(s) 1498, 1507
BstMAI GTCTC 2 cut(s) 2, 1806
BstMWI GCNNNNNNNGC 6 cut(s) 857, 1130, 1283, 1522, 1531, 1834
BstNI CCWGG 3 cut(s) 125, 1019, 1312
BstNSI RCATGY 1 cut(s) 1124
BstSCI CCNGG 3 cut(s) 123, 1017, 1310
BstSFI CTRYAG 1 cut(s) 374
BstV1I GCAGC 4 cut(s) 946, 1011, 1120, 1537
BstV2I GAAGAC 2 cut(s) 139, 1056
BstX2I RGATCY 2 cut(s) 835, 1325
BstXI CCANNNNNNTGG 1 cut(s) 470
BstYI RGATCY 2 cut(s) 835, 1325
BsuRI GGCC 6 cut(s) 372, 686, 851, 863, 1338, 1837
BtsCI GGATG 2 cut(s) 1498, 1507
BtsIMutI CAGTG 4 cut(s) 490, 1287, 1548, 1634
BveI ACCTGC 1 cut(s) 889
Cac8I GCNNGC 3 cut(s) 63, 78, 1549
CaiI CAGNNNCTG 2 cut(s) 1286, 1547
CciI TCATGA 1 cut(s) 1714
Cfr10I RCCGGY 1 cut(s) 851
Cfr13I GGNCC 1 cut(s) 849
CsiI ACCWGGT 1 cut(s) 123
Csp6I GTAC 2 cut(s) 943, 1199
CspCI CAANNNNNGTGG 2 cut(s) 194, 229
CviAII CATG 5 cut(s) 1097, 1121, 1694, 1715, 1881
CviQI GTAC 2 cut(s) 943, 1199
DdeI CTNAG 9 cut(s) 156, 380, 420, 624, 788, 822, 839, 981, 1593
DriI GACNNNNNGTC 1 cut(s) 415
EaeI YGGCCR 2 cut(s) 684, 861
Eam1104I CTCTTC 2 cut(s) 660, 1237
Eam1105I GACNNNNNGTC 1 cut(s) 415
EarI CTCTTC 2 cut(s) 660, 1237
Ecl136II GAGCTC 2 cut(s) 583, 733
Eco130I CCWWGG 2 cut(s) 222, 1333
Eco147I AGGCCT 1 cut(s) 372
Eco24I GRGCYC 3 cut(s) 585, 735, 878
Eco31I GGTCTC 1 cut(s) 1806
Eco32I GATATC 1 cut(s) 55
Eco53kI GAGCTC 2 cut(s) 583, 733
EcoICRI GAGCTC 2 cut(s) 583, 733
EcoRI GAATTC 2 cut(s) 105, 1809
EcoRII CCWGG 3 cut(s) 123, 1017, 1310
EcoRV GATATC 1 cut(s) 55
EcoT14I CCWWGG 2 cut(s) 222, 1333
EcoT38I GRGCYC 3 cut(s) 585, 735, 878
ErhI CCWWGG 2 cut(s) 222, 1333
FaeI CATG 5 cut(s) 1100, 1124, 1697, 1718, 1884
FaqI GGGAC 3 cut(s) 1360, 1688, 1743
FatI CATG 5 cut(s) 1096, 1120, 1693, 1714, 1880
FauI CCCGC 2 cut(s) 1337, 1590
FauNDI CATATG 1 cut(s) 1530
FbaI TGATCA 2 cut(s) 1075, 1504
Fnu4HI GCNGC 5 cut(s) 861, 960, 1000, 1134, 1526
FokI GGATG 2 cut(s) 1494, 1505
FriOI GRGCYC 3 cut(s) 585, 735, 878
Fsp4HI GCNGC 5 cut(s) 861, 960, 1000, 1134, 1526
FspBI CTAG 1 cut(s) 1903
GluI GCNGC 5 cut(s) 861, 960, 1000, 1134, 1526
GsuI CTGGAG 4 cut(s) 179, 707, 1113, 1263
HaeIII GGCC 6 cut(s) 372, 686, 851, 863, 1338, 1837
HapII CCGG 1 cut(s) 852
Hin1II CATG 5 cut(s) 1100, 1124, 1697, 1718, 1884
HindIII AAGCTT 3 cut(s) 59, 618, 644
HinfI GANTC 3 cut(s) 905, 1081, 1457
HpaII CCGG 1 cut(s) 852
HphI GGTGA 2 cut(s) 866, 1239
Hpy166II GTNNAC 4 cut(s) 130, 346, 634, 1625
Hpy188I TCNGA 7 cut(s) 187, 326, 625, 789, 842, 1080, 1477
Hpy8I GTNNAC 4 cut(s) 130, 346, 634, 1625
HpyAV CCTTC 4 cut(s) 721, 864, 1269, 1712
HpyCH4III ACNGT 5 cut(s) 485, 1267, 1543, 1629, 1769
HpyCH4V TGCA 4 cut(s) 767, 1304, 1405, 1632
HpyF10VI GCNNNNNNNGC 6 cut(s) 857, 1130, 1283, 1522, 1531, 1834
HpyF3I CTNAG 9 cut(s) 156, 380, 420, 624, 788, 822, 839, 981, 1593
Hsp92II CATG 5 cut(s) 1100, 1124, 1697, 1718, 1884
Ksp22I TGATCA 2 cut(s) 1075, 1504
LmnI GCTCC 6 cut(s) 465, 730, 738, 1035, 1282, 1737
Lsp1109I GCAGC 4 cut(s) 946, 1011, 1120, 1537
LweI GCATC 3 cut(s) 1313, 1636, 1720
MabI ACCWGGT 1 cut(s) 123
MaeI CTAG 1 cut(s) 1903
MaeIII GTNAC 7 cut(s) 364, 612, 817, 1139, 1426, 1495, 1537
MbiI CCGCTC 2 cut(s) 294, 1597
MflI RGATCY 2 cut(s) 835, 1325
MhlI GDGCHC 3 cut(s) 585, 735, 878
MlsI TGGCCA 1 cut(s) 686
MluNI TGGCCA 1 cut(s) 686
MlyI GAGTC 1 cut(s) 1451
MmeI TCCRAC 1 cut(s) 451
Mox20I TGGCCA 1 cut(s) 686
MroXI GAANNNNTTC 1 cut(s) 255
MscI TGGCCA 1 cut(s) 686
MseI TTAA 2 cut(s) 1173, 1773
MslI CAYNNNNRTG 2 cut(s) 1252, 1719
Msp20I TGGCCA 1 cut(s) 686
MspA1I CMGCKG 2 cut(s) 1133, 1704
MspI CCGG 1 cut(s) 852
MspR9I CCNGG 3 cut(s) 125, 1019, 1312
MvaI CCWGG 3 cut(s) 125, 1019, 1312
MwoI GCNNNNNNNGC 6 cut(s) 857, 1130, 1283, 1522, 1531, 1834
NdeI CATATG 1 cut(s) 1530
NlaIII CATG 5 cut(s) 1100, 1124, 1697, 1718, 1884
NlaIV GGNNCC 2 cut(s) 1575, 1829
NmeAIII GCCGAG 1 cut(s) 1492
NmuCI GTSAC 2 cut(s) 364, 1495
NspI RCATGY 1 cut(s) 1124
PagI TCATGA 1 cut(s) 1714
PceI AGGCCT 1 cut(s) 372
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 2 cut(s) 905, 1081
PflFI GACNNNGTC 1 cut(s) 485
PflMI CCANNNNNTGG 2 cut(s) 1286, 1664
PfoI TCCNGGA 1 cut(s) 1310
PkrI GCNGC 5 cut(s) 862, 961, 1001, 1135, 1527
PleI GAGTC 1 cut(s) 1451
PpsI GAGTC 1 cut(s) 1451
PshBI ATTAAT 1 cut(s) 1773
Psp124BI GAGCTC 2 cut(s) 585, 735
Psp6I CCWGG 3 cut(s) 123, 1017, 1310
PspGI CCWGG 3 cut(s) 123, 1017, 1310
PspN4I GGNNCC 2 cut(s) 1575, 1829
PspPI GGNCC 1 cut(s) 849
PstNI CAGNNNCTG 2 cut(s) 1286, 1547
PsuI RGATCY 2 cut(s) 835, 1325
PsyI GACNNNGTC 1 cut(s) 485
PvuII CAGCTG 1 cut(s) 1133
RsaI GTAC 2 cut(s) 944, 1200
RsaNI GTAC 2 cut(s) 943, 1199
RseI CAYNNNNRTG 2 cut(s) 1252, 1719
SacI GAGCTC 2 cut(s) 585, 735
SaqAI TTAA 2 cut(s) 1173, 1773
SatI GCNGC 5 cut(s) 861, 960, 1000, 1134, 1526
Sau96I GGNCC 1 cut(s) 849
SchI GAGTC 1 cut(s) 1451
ScrFI CCNGG 3 cut(s) 125, 1019, 1312
SduI GDGCHC 3 cut(s) 585, 735, 878
SexAI ACCWGGT 1 cut(s) 123
SfaNI GCATC 3 cut(s) 1313, 1636, 1720
SfcI CTRYAG 1 cut(s) 374
SmiMI CAYNNNNRTG 2 cut(s) 1252, 1719
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SseBI AGGCCT 1 cut(s) 372
SsiI CCGC 9 cut(s) 292, 448, 860, 915, 997, 1297, 1330, 1597, 1702
SspMI CTAG 1 cut(s) 1903
SstI GAGCTC 2 cut(s) 585, 735
StuI AGGCCT 1 cut(s) 372
StyD4I CCNGG 3 cut(s) 123, 1017, 1310
StyI CCWWGG 2 cut(s) 222, 1333
TaaI ACNGT 5 cut(s) 485, 1267, 1543, 1629, 1769
TaqI TCGA 4 cut(s) 138, 259, 878, 1729
TaqII GACCGA 1 cut(s) 944
TatI WGTACW 1 cut(s) 1198
TauI GCSGC 1 cut(s) 863
TfiI GAWTC 2 cut(s) 905, 1081
Tru1I TTAA 2 cut(s) 1173, 1773
Tru9I TTAA 2 cut(s) 1173, 1773
TscAI CASTG 4 cut(s) 490, 1287, 1548, 1634
TseFI GTSAC 2 cut(s) 364, 1495
TseI GCWGC 4 cut(s) 959, 999, 1133, 1525
Tsp45I GTSAC 2 cut(s) 364, 1495
TspDTI ATGAA 6 cut(s) 375, 762, 1169, 1176, 1497, 1731
TspGWI ACGGA 1 cut(s) 960
TspRI CASTG 4 cut(s) 490, 1287, 1548, 1634
Tth111I GACNNNGTC 1 cut(s) 485
Van91I CCANNNNNTGG 2 cut(s) 1286, 1664
VspI ATTAAT 1 cut(s) 1773
XapI RAATTY 7 cut(s) 21, 105, 200, 886, 1462, 1603, 1809
XceI RCATGY 1 cut(s) 1124
XcmI CCANNNNNNNNNTGG 1 cut(s) 1340
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 1 cut(s) 1903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.