Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005168.1

Orthogroup ID

OG0007401

Physical Location & Seq

Genomic Coordinates Reverse (-)

59018 .. 61129

Gene Structure 2112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005168.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1803 bp

atggaggagactaccacacaaatttgtttccctattgattctcaatctcctgatatcaagcttgctactctcctgcttgctaccattcaggaagctaaagaccgaattcaggaaaccaaagaccgggtttaccagatcgaatatgtcttccttgctcagctataccccttattacaatccaagtccgaaactctccagaaatttcaagatgagtggaaatccaaggaagctaatctcttgcttctaattgaaacacttcgagctgaaaacgaactaaccattgaggagaaccgctcgctcaagcttggcagggaaaagatgttcagagaaaaggaggacattataaaccaactgcgagatgaagtgacaggcctacagctaaggagtgatgagctggaacaaacgcttgaccgcaagtctaaggaagccgatgagggaatggaattgcggagtaagttgctccaagaggttgaattgaaagacagtgtcgttgtgagtaaggacaagcaactgaaagagagtgaagaaagtagaaatgtgctttctgcgaaagtgagtgatcttgaaaaaagagctgatgagctcaaacaaaatctgttcaagaagattgagttacaagcttctgagatcgtgaacaatgaaaagcttttgaagtatcgggaagaagagaaaaaactaatgttggccaaattgaaaaatgtggaagaaaatgttagccaactccagaaggagctcctaacaaagaatgaagaagtggaagattgtgcaagagagaaaaaacttcttctgagaaaaatgactggtttagaggagaaagttactgagctacaaggggatctcagaggcagggccggtgaagcggccaaaagaaggggttcgactgaaaatttacaccaacaggttgaatcaataaccgcagatttactgactgagaggaagaagtacggggaacttactgctgcttacaaaagtctaaaatctcagcacatatatctccgcagcaaatatggtcttacccaggagaatatgctcccccataataaactggaagacgaaagtgatttattgagaaatgatcagaatccatcaactttccatgatcttgaagataaaaatcaacatgcttctccagctgcttataacataaagaaaatgaagaatgaaatcagttttaacaataacttgaatgagggcaaagtacaaaaaccaattcaagcaacaagtcctttctcttctacttctgtttcacccaaatgtccttccactgtaaaatctgctccagtagctggtagaaagcggtctgcatcgtcctggatagacacgagatcccgccaaggccaaaatgggactgacccacacgatgattttcttgacaccccgattgagaacgtaagagcaaacttgaatagatcaacaaaggaaaaagttactgatcttccagttccagttcaaaatgactcaaatttaggtagctctgatgatgaaacacaggatgtgactgctgatcatcctcggctaccaaagcagcatatgccagttacagtggctggcaaaaatggtttcaagtatgtggaacctgtaagaaagagggctgagcgggaaaatttgaaaggagttgaatgcaaacagtgcaaaaagttttatgatgctgttcttccagatgatggtggcaaggacaatggtactaataagcatgatttccgctgtgagcatcatgaaggtgtttctcgacacaggtataggtatcttcccccttcaactcccgaaggattttggaatattggatttgaatctgaaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0006950 GO:0006974 GO:0007276 GO:0008150 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0019953 GO:0022414 GO:0032501 GO:0032504 GO:0033554 GO:0044703 GO:0048609 GO:0050896 GO:0051704 GO:0051716

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAE2

Protein Analysis

600

Amino Acids

68.85

Weight (kDa)

6.0

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52115
fragaria_vesca	FvH4_7g00721 FvH4_7g00721 FvH4_7g00721
malus_domestica	MD02G1315100.v1.1 MD07G1006900.v1.1
prunus_persica	Prupe.2G009900_v2.0.a1 Prupe.2G009900_v2.0.a1 Prupe.2G009900_v2.0.a1
pyrus_communis	pycom02g26410 pycom07g00550
rosa_chinensis	RchiOBHm_Chr1g0314941
rosa_laevigata	RLG00000030753
rosa_multiflora	Rmu_sc0005015.1_g000001 Rmu_sc0005168.1_g000010 Rmu_sc0026403.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331660
rosa_rugosa	Rorug01G0003100 Rorug01G0003200.1 Rorug01G0003300
rosa_samantha	Rh1AG014100 Rh1BG005800 Rh1CG012300 Rh1DG007700
rosa_wichuraiana	Rw1G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	344, 1140
AccB7I	CCANNNNNTGG	2 cut(s)	1286, 1664
AccBSI	CCGCTC	2 cut(s)	294, 1597
AclWI	GGATC	2 cut(s)	843, 1320
AcoI	YGGCCR	2 cut(s)	684, 861
AcsI	RAATTY	6 cut(s)	21, 105, 200, 886, 1462, 1603
AfaI	GTAC	3 cut(s)	944, 1200, 1684
AfiI	CCNNNNNNNGG	5 cut(s)	109, 123, 870, 1286, 1664
AhdI	GACNNNNNGTC	1 cut(s)	415
AjnI	CCWGG	2 cut(s)	1017, 1310
AloI	GAACNNNNNNTCC	2 cut(s)	305, 337
Alw21I	GWGCWC	2 cut(s)	585, 735
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	2 cut(s)	843, 1320
AlwNI	CAGNNNCTG	2 cut(s)	1286, 1547
AoxI	GGCC	5 cut(s)	370, 684, 849, 861, 1336
ApeKI	GCWGC	4 cut(s)	959, 999, 1133, 1525
ApoI	RAATTY	6 cut(s)	21, 105, 200, 886, 1462, 1603
Asp700I	GAANNNNTTC	2 cut(s)	255, 874
AspS9I	GGNCC	1 cut(s)	849
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	2 cut(s)	866, 1239
BalI	TGGCCA	1 cut(s)	686
BanII	GRGCYC	2 cut(s)	585, 735
BauI	CACGAG	1 cut(s)	1321
BbsI	GAAGAC	2 cut(s)	139, 1056
Bbv12I	GWGCWC	2 cut(s)	585, 735
BbvI	GCAGC	4 cut(s)	946, 1011, 1120, 1537
BccI	CCATC	2 cut(s)	1093, 1658
BciT130I	CCWGG	2 cut(s)	1019, 1312
BclI	TGATCA	2 cut(s)	1075, 1504
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	2
BfmI	CTRYAG	1 cut(s)	374
BisI	GCNGC	5 cut(s)	861, 960, 1000, 1134, 1526
BlpI	GCTNAGC	2 cut(s)	156, 1593
BlsI	GCNGC	5 cut(s)	862, 961, 1001, 1135, 1527
Bme1390I	CCNGG	3 cut(s)	125, 1019, 1312
BmeRI	GACNNNNNGTC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	849
BmiI	GGNNCC	1 cut(s)	1575
BmrFI	CCNGG	3 cut(s)	125, 1019, 1312
BmsI	GCATC	3 cut(s)	1313, 1636, 1720
BpiI	GAAGAC	2 cut(s)	139, 1056
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
BpmI	CTGGAG	4 cut(s)	179, 707, 1113, 1263
Bpu10I	CCTNAGC	1 cut(s)	380
Bpu1102I	GCTNAGC	2 cut(s)	156, 1593
BpuEI	CTTGAG	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	125
BsaBI	GATNNNNATC	3 cut(s)	1080, 1113, 1789
BsaJI	CCNNGG	4 cut(s)	222, 1017, 1333, 1511
Bsc4I	CCNNNNNNNGG	5 cut(s)	109, 123, 870, 1286, 1664
Bse118I	RCCGGY	1 cut(s)	851
Bse1I	ACTGG	6 cut(s)	805, 1050, 1280, 1439, 1445, 1535
Bse8I	GATNNNNATC	3 cut(s)	1080, 1113, 1789
BseBI	CCWGG	2 cut(s)	1019, 1312
BseDI	CCNNGG	4 cut(s)	222, 1017, 1333, 1511
BseGI	GGATG	2 cut(s)	1498, 1507
BseJI	GATNNNNATC	3 cut(s)	1080, 1113, 1789
BseLI	CCNNNNNNNGG	5 cut(s)	109, 123, 870, 1286, 1664
BseMII	CTCAG	8 cut(s)	170, 615, 779, 813, 853, 921, 995, 1584
BseNI	ACTGG	6 cut(s)	805, 1050, 1280, 1439, 1445, 1535
BseRI	GAGGAG	3 cut(s)	20, 299, 824
BseXI	GCAGC	4 cut(s)	946, 1011, 1120, 1537
BshFI	GGCC	5 cut(s)	372, 686, 851, 863, 1338
BsiHKAI	GWGCWC	2 cut(s)	585, 735
BsiSI	CCGG	2 cut(s)	124, 852
BslFI	GGGAC	1 cut(s)	1360
BslI	CCNNNNNNNGG	5 cut(s)	109, 123, 870, 1286, 1664
BsmAI	GTCTC	1 cut(s)	2
BsmFI	GGGAC	1 cut(s)	1360
BsmI	GAATGC	1 cut(s)	1625
BsnI	GGCC	5 cut(s)	372, 686, 851, 863, 1338
Bsp1286I	GDGCHC	2 cut(s)	585, 735
Bsp1720I	GCTNAGC	2 cut(s)	156, 1593
BspANI	GGCC	5 cut(s)	372, 686, 851, 863, 1338
BspCNI	CTCAG	8 cut(s)	169, 616, 780, 814, 852, 922, 994, 1585
BspHI	TCATGA	1 cut(s)	1714
BspLI	GGNNCC	1 cut(s)	1575
BspPI	GGATC	2 cut(s)	843, 1320
BsrBI	CCGCTC	2 cut(s)	294, 1597
BsrFI	RCCGGY	1 cut(s)	851
BsrI	ACTGG	6 cut(s)	805, 1050, 1280, 1439, 1445, 1535
BssAI	RCCGGY	1 cut(s)	851
BssECI	CCNNGG	4 cut(s)	222, 1017, 1333, 1511
BssSI	CACGAG	1 cut(s)	1321
BssT1I	CCWWGG	2 cut(s)	222, 1333
Bst2BI	CACGAG	1 cut(s)	1321
Bst2UI	CCWGG	2 cut(s)	1019, 1312
Bst4CI	ACNGT	4 cut(s)	485, 1267, 1543, 1629
Bst6I	CTCTTC	2 cut(s)	660, 1237
BstAPI	GCANNNNNTGC	2 cut(s)	1531, 1629
BstC8I	GCNNGC	4 cut(s)	63, 78, 296, 1549
BstF5I	GGATG	2 cut(s)	1498, 1507
BstMAI	GTCTC	1 cut(s)	2
BstMWI	GCNNNNNNNGC	6 cut(s)	857, 1130, 1283, 1522, 1531, 1629
BstNI	CCWGG	2 cut(s)	1019, 1312
BstNSI	RCATGY	1 cut(s)	1124
BstSCI	CCNGG	3 cut(s)	123, 1017, 1310
BstSFI	CTRYAG	1 cut(s)	374
BstV1I	GCAGC	4 cut(s)	946, 1011, 1120, 1537
BstV2I	GAAGAC	2 cut(s)	139, 1056
BstX2I	RGATCY	2 cut(s)	835, 1325
BstYI	RGATCY	2 cut(s)	835, 1325
BsuRI	GGCC	5 cut(s)	372, 686, 851, 863, 1338
BtsCI	GGATG	2 cut(s)	1498, 1507
BtsIMutI	CAGTG	4 cut(s)	490, 1263, 1548, 1634
Cac8I	GCNNGC	4 cut(s)	63, 78, 296, 1549
CaiI	CAGNNNCTG	2 cut(s)	1286, 1547
CciI	TCATGA	1 cut(s)	1714
Cfr10I	RCCGGY	1 cut(s)	851
Cfr13I	GGNCC	1 cut(s)	849
Csp6I	GTAC	3 cut(s)	943, 1199, 1683
CspCI	CAANNNNNGTGG	2 cut(s)	194, 229
CviAII	CATG	4 cut(s)	1097, 1121, 1694, 1715
CviQI	GTAC	3 cut(s)	943, 1199, 1683
DriI	GACNNNNNGTC	1 cut(s)	415
EaeI	YGGCCR	2 cut(s)	684, 861
Eam1104I	CTCTTC	2 cut(s)	660, 1237
Eam1105I	GACNNNNNGTC	1 cut(s)	415
EarI	CTCTTC	2 cut(s)	660, 1237
Ecl136II	GAGCTC	2 cut(s)	583, 733
Eco130I	CCWWGG	2 cut(s)	222, 1333
Eco147I	AGGCCT	1 cut(s)	372
Eco24I	GRGCYC	2 cut(s)	585, 735
Eco32I	GATATC	1 cut(s)	55
Eco53kI	GAGCTC	2 cut(s)	583, 733
EcoICRI	GAGCTC	2 cut(s)	583, 733
EcoRI	GAATTC	1 cut(s)	105
EcoRII	CCWGG	2 cut(s)	1017, 1310
EcoRV	GATATC	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	222, 1333
EcoT38I	GRGCYC	2 cut(s)	585, 735
ErhI	CCWWGG	2 cut(s)	222, 1333
FaeI	CATG	4 cut(s)	1100, 1124, 1697, 1718
FaqI	GGGAC	1 cut(s)	1360
FatI	CATG	4 cut(s)	1096, 1120, 1693, 1714
FauI	CCCGC	2 cut(s)	1337, 1590
FauNDI	CATATG	1 cut(s)	1530
FbaI	TGATCA	2 cut(s)	1075, 1504
Fnu4HI	GCNGC	5 cut(s)	861, 960, 1000, 1134, 1526
FokI	GGATG	2 cut(s)	1494, 1505
FriOI	GRGCYC	2 cut(s)	585, 735
Fsp4HI	GCNGC	5 cut(s)	861, 960, 1000, 1134, 1526
GluI	GCNGC	5 cut(s)	861, 960, 1000, 1134, 1526
GsuI	CTGGAG	4 cut(s)	179, 707, 1113, 1263
HaeIII	GGCC	5 cut(s)	372, 686, 851, 863, 1338
HapII	CCGG	2 cut(s)	124, 852
Hin1II	CATG	4 cut(s)	1100, 1124, 1697, 1718
HindIII	AAGCTT	4 cut(s)	59, 302, 618, 644
HinfI	GANTC	5 cut(s)	38, 905, 1081, 1457, 1790
HpaII	CCGG	2 cut(s)	124, 852
HphI	GGTGA	2 cut(s)	866, 1239
Hpy166II	GTNNAC	2 cut(s)	130, 634
Hpy188I	TCNGA	8 cut(s)	187, 326, 625, 789, 842, 1080, 1477, 1795
Hpy8I	GTNNAC	2 cut(s)	130, 634
HpyAV	CCTTC	6 cut(s)	721, 864, 1269, 1712, 1760, 1764
HpyCH4III	ACNGT	4 cut(s)	485, 1267, 1543, 1629
HpyCH4IV	ACGT	1 cut(s)	1389
HpyCH4V	TGCA	4 cut(s)	767, 1304, 1623, 1632
HpyF10VI	GCNNNNNNNGC	6 cut(s)	857, 1130, 1283, 1522, 1531, 1629
HpySE526I	ACGT	1 cut(s)	1389
Hsp92II	CATG	4 cut(s)	1100, 1124, 1697, 1718
Ksp22I	TGATCA	2 cut(s)	1075, 1504
LmnI	GCTCC	5 cut(s)	465, 730, 738, 1035, 1282
Lsp1109I	GCAGC	4 cut(s)	946, 1011, 1120, 1537
LweI	GCATC	3 cut(s)	1313, 1636, 1720
MaeII	ACGT	1 cut(s)	1389
MaeIII	GTNAC	6 cut(s)	364, 612, 817, 1426, 1495, 1537
MbiI	CCGCTC	2 cut(s)	294, 1597
MflI	RGATCY	2 cut(s)	835, 1325
MhlI	GDGCHC	2 cut(s)	585, 735
MlsI	TGGCCA	1 cut(s)	686
MluNI	TGGCCA	1 cut(s)	686
MlyI	GAGTC	1 cut(s)	1451
Mox20I	TGGCCA	1 cut(s)	686
MroXI	GAANNNNTTC	2 cut(s)	255, 874
MscI	TGGCCA	1 cut(s)	686
MseI	TTAA	1 cut(s)	1173
MslI	CAYNNNNRTG	2 cut(s)	1252, 1719
Msp20I	TGGCCA	1 cut(s)	686
MspA1I	CMGCKG	2 cut(s)	1133, 1704
MspI	CCGG	2 cut(s)	124, 852
MspR9I	CCNGG	3 cut(s)	125, 1019, 1312
Mva1269I	GAATGC	1 cut(s)	1625
MvaI	CCWGG	2 cut(s)	1019, 1312
MwoI	GCNNNNNNNGC	6 cut(s)	857, 1130, 1283, 1522, 1531, 1629
NciI	CCSGG	1 cut(s)	125
NdeI	CATATG	1 cut(s)	1530
NlaIII	CATG	4 cut(s)	1100, 1124, 1697, 1718
NlaIV	GGNNCC	1 cut(s)	1575
NmeAIII	GCCGAG	1 cut(s)	1492
NmuCI	GTSAC	2 cut(s)	364, 1495
NspI	RCATGY	1 cut(s)	1124
PagI	TCATGA	1 cut(s)	1714
PceI	AGGCCT	1 cut(s)	372
PctI	GAATGC	1 cut(s)	1625
PdmI	GAANNNNTTC	2 cut(s)	255, 874
PfeI	GAWTC	4 cut(s)	38, 905, 1081, 1790
PflFI	GACNNNGTC	1 cut(s)	485
PflMI	CCANNNNNTGG	2 cut(s)	1286, 1664
PfoI	TCCNGGA	1 cut(s)	1310
PkrI	GCNGC	5 cut(s)	862, 961, 1001, 1135, 1527
PleI	GAGTC	1 cut(s)	1451
PpsI	GAGTC	1 cut(s)	1451
PsiI	TTATAA	2 cut(s)	344, 1140
Psp124BI	GAGCTC	2 cut(s)	585, 735
Psp6I	CCWGG	2 cut(s)	1017, 1310
PspGI	CCWGG	2 cut(s)	1017, 1310
PspN4I	GGNNCC	1 cut(s)	1575
PspPI	GGNCC	1 cut(s)	849
PstNI	CAGNNNCTG	2 cut(s)	1286, 1547
PsuI	RGATCY	2 cut(s)	835, 1325
PsyI	GACNNNGTC	1 cut(s)	485
PvuII	CAGCTG	1 cut(s)	1133
RsaI	GTAC	3 cut(s)	944, 1200, 1684
RsaNI	GTAC	3 cut(s)	943, 1199, 1683
RseI	CAYNNNNRTG	2 cut(s)	1252, 1719
SacI	GAGCTC	2 cut(s)	585, 735
SaqAI	TTAA	1 cut(s)	1173
SatI	GCNGC	5 cut(s)	861, 960, 1000, 1134, 1526
Sau96I	GGNCC	1 cut(s)	849
SchI	GAGTC	1 cut(s)	1451
ScrFI	CCNGG	3 cut(s)	125, 1019, 1312
SduI	GDGCHC	2 cut(s)	585, 735
SfaNI	GCATC	3 cut(s)	1313, 1636, 1720
SfcI	CTRYAG	1 cut(s)	374
SmiMI	CAYNNNNRTG	2 cut(s)	1252, 1719
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
SseBI	AGGCCT	1 cut(s)	372
SspI	AATATT	1 cut(s)	1780
SstI	GAGCTC	2 cut(s)	585, 735
StuI	AGGCCT	1 cut(s)	372
StyD4I	CCNGG	3 cut(s)	123, 1017, 1310
StyI	CCWWGG	2 cut(s)	222, 1333
TaaI	ACNGT	4 cut(s)	485, 1267, 1543, 1629
TaiI	ACGT	1 cut(s)	1392
TaqI	TCGA	4 cut(s)	138, 259, 878, 1729
TaqII	GACCGA	1 cut(s)	117
TatI	WGTACW	1 cut(s)	1198
TauI	GCSGC	1 cut(s)	863
TfiI	GAWTC	4 cut(s)	38, 905, 1081, 1790
Tru1I	TTAA	1 cut(s)	1173
Tru9I	TTAA	1 cut(s)	1173
TscAI	CASTG	4 cut(s)	490, 1270, 1548, 1634
TseFI	GTSAC	2 cut(s)	364, 1495
TseI	GCWGC	4 cut(s)	959, 999, 1133, 1525
Tsp45I	GTSAC	2 cut(s)	364, 1495
TspDTI	ATGAA	7 cut(s)	375, 654, 762, 1169, 1176, 1497, 1731
TspRI	CASTG	4 cut(s)	490, 1270, 1548, 1634
Tth111I	GACNNNGTC	1 cut(s)	485
Van91I	CCANNNNNTGG	2 cut(s)	1286, 1664
XapI	RAATTY	6 cut(s)	21, 105, 200, 886, 1462, 1603
XceI	RCATGY	1 cut(s)	1124
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1340
XmnI	GAANNNNTTC	2 cut(s)	255, 874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.