Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007401

Physical Location & Seq

Genomic Coordinates Reverse (-)

647601 .. 650529

Gene Structure 2929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1006900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGCTTAAGCATAAGTCTACGGAAGTAGATAAGGGTATGGAATTGGAGAGTAAGTTGCTCGGAGTGATTCAATCCAAAGACGCTGTCATTATGGATAAGGAAAAACAACTGAAAGAGAATGAAGAAAGTAGAAACATGCTTCTTGCTAAATTAAGTGATCTTGAAAATAGAGTTGATGAACTCCAAGAGGAGCTCGGGGAAAAGATTAACCAAGTAGCCAATAGAAATGAGCTTGAAGAAAATTTATTTCGAAAGGTTGAGCATCAGTCTTCTGAGATCATGAATAAAGAAAAGCTTCTGAATGATCAAGAAGAAGAGAAAAAACTTCTCAGGGCCAAATTGGAAATTTTGGAAGAAAATGTTAGTCAACTCCAAAAGGAGCTCCTTACAAAGAACAATGAAGTGGAGGGTTATCTGAGGGAAAAAAAACAGTTTCTAGCCAAAGTAACTAGTTTAGAGGAAAAAGTTGATGAACTACAGGCGGATATTAGAGGTATGGCTGGCGAAGTGACCAAAAGAAGGGATTCATGTGAAAAGTTATATCAACAGATTGAATCAATGAACTCGGGTTTACAGGCTGAGAGGAAGAAGTACACAGATCTTACTGGTGCTTACAAAAACCTGAAATCTCAGCACAAGTATCTCCGCACAAAGCTTGGTCTTACAAGGGAGAATGTGCTACCCCAGAATAAGTTGGAAGATAGAAGTGATTTGTTGAGATATGATCAAAATCCATCAACTTCACATGATCTTGTCGAGAAAAATCAGAATGCTTCTGCGTCAACTTTATGCACAAAAAAAGTGAGGAATGAAATCAGTTGTAACAATAACTTGGAGGATGTGAAAGGAGGCAAGCCAATTCAAGCAGCTAGTCCTATCTCTTCTACTTCCTTCTTCCCCATTGCACAAGAATGCCCTCCCACCTCAAAATCTGCCCCAGTAGCTGGGAGAAAACGGCCTGCTTCCAGTTGGGTGGATACTAGGACGCGTCAAGGCCAAGATGGGCCTGATCCACACGATGATTTTCTTGATACCCCACTTGAGAACATTAGAGGAAACTTGAATAAAGCGACAAAGGAACAAGTTCCTGGTCGTCCAGTTCCAGTTCCAGCTCCAAATGACATGAATGTAGATAGCTCAGATGATGAAACACAGGATGTGAACACTGTAGTTAGGCCACAGAAGCAGCAGATGCCAGCTCCAGTGGCCGGTAAAAATGGTTTCAAGTTTGTGGAACCTGTAAGAAAGAAAGCTGAGCGGGAAAATTTGAAAGGAGTTGAATGCAAGCAGTGCAAAAAGTTCTATGACGCTGTCCTTCCCAATGAAGGCTGTGGTAAGGACACTGATAATAATAAGCATAATTTTCGCTGTGAGCACCATGAAGGTGTTTCTCGTCATCGGTATAGGTATGCTCCCCCCCTTACTCCAGAAGGGTTTTGGAATATTGGATTTGAATCTGAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0006950 GO:0006974 GO:0007276 GO:0008150 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0019953 GO:0022414 GO:0032501 GO:0032504 GO:0033554 GO:0044703 GO:0048609 GO:0050896 GO:0051704 GO:0051716

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAE2

Protein Analysis

489

Amino Acids

55.61

Weight (kDa)

6.25

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52115
fragaria_vesca	FvH4_7g00721 FvH4_7g00721 FvH4_7g00721
malus_domestica	MD02G1315100.v1.1 MD07G1006900.v1.1
prunus_persica	Prupe.2G009900_v2.0.a1 Prupe.2G009900_v2.0.a1 Prupe.2G009900_v2.0.a1
pyrus_communis	pycom02g26410 pycom07g00550
rosa_chinensis	RchiOBHm_Chr1g0314941
rosa_laevigata	RLG00000030753
rosa_multiflora	Rmu_sc0005015.1_g000001 Rmu_sc0005168.1_g000010 Rmu_sc0026403.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331660
rosa_rugosa	Rorug01G0003100 Rorug01G0003200.1 Rorug01G0003300
rosa_samantha	Rh1AG014100 Rh1BG005800 Rh1CG012300 Rh1DG007700
rosa_wichuraiana	Rw1G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	944
AccBSI	CCGCTC	1 cut(s)	1258
AccI	GTMKAC	1 cut(s)	17
AccII	CGCG	1 cut(s)	988
AciI	CCGC	3 cut(s)	482, 646, 1258
AclWI	GGATC	1 cut(s)	1004
AcoI	YGGCCR	1 cut(s)	1206
AcsI	RAATTY	3 cut(s)	241, 345, 1264
AfaI	GTAC	1 cut(s)	593
AfiI	CCNNNNNNNGG	4 cut(s)	519, 944, 1208, 1325
AflII	CTTAAG	1 cut(s)	5
AflIII	ACRYGT	1 cut(s)	986
AhlI	ACTAGT	1 cut(s)	449
AjnI	CCWGG	1 cut(s)	1087
Alw21I	GWGCWC	3 cut(s)	195, 384, 1377
AlwI	GGATC	1 cut(s)	1004
AlwNI	CAGNNNCTG	1 cut(s)	944
Ama87I	CYCGRG	2 cut(s)	194, 565
AoxI	GGCC	6 cut(s)	333, 956, 994, 1004, 1175, 1206
ApeKI	GCWGC	2 cut(s)	866, 1186
ApoI	RAATTY	3 cut(s)	241, 345, 1264
ArsI	GACNNNNNNTTYG	2 cut(s)	69, 101
Asp700I	GAANNNNTTC	3 cut(s)	294, 523, 1083
AspS9I	GGNCC	2 cut(s)	333, 1004
AsuII	TTCGAA	1 cut(s)	250
AvaI	CYCGRG	2 cut(s)	194, 565
BanII	GRGCYC	2 cut(s)	195, 384
BbsI	GAAGAC	1 cut(s)	261
Bbv12I	GWGCWC	3 cut(s)	195, 384, 1377
BbvI	GCAGC	2 cut(s)	878, 1198
BccI	CCATC	2 cut(s)	742, 995
BceAI	ACGGC	1 cut(s)	971
BcgI	CGANNNNNNTGC	2 cut(s)	1346, 1380
BciT130I	CCWGG	1 cut(s)	1089
BciVI	GTATCC	1 cut(s)	970
BclI	TGATCA	2 cut(s)	304, 724
BcuI	ACTAGT	1 cut(s)	449
BfaI	CTAG	4 cut(s)	437, 450, 870, 981
BfmI	CTRYAG	2 cut(s)	476, 1167
BfrI	CTTAAG	1 cut(s)	5
BfuI	GTATCC	1 cut(s)	970
BglII	AGATCT	1 cut(s)	598
BisI	GCNGC	2 cut(s)	867, 1187
BlpI	GCTNAGC	1 cut(s)	1254
BlsI	GCNGC	2 cut(s)	868, 1188
Bme1390I	CCNGG	1 cut(s)	1089
BmeT110I	CYCGRG	2 cut(s)	194, 565
BmgT120I	GGNCC	2 cut(s)	333, 1004
BmiI	GGNNCC	1 cut(s)	1236
BmrFI	CCNGG	1 cut(s)	1089
BmrI	ACTGGG	1 cut(s)	932
BmsI	GCATC	2 cut(s)	271, 1182
BmuI	ACTGGG	1 cut(s)	932
BpiI	GAAGAC	1 cut(s)	261
BpmI	CTGGAG	2 cut(s)	1185, 1410
Bpu1102I	GCTNAGC	1 cut(s)	1254
Bpu14I	TTCGAA	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	1061
BsaBI	GATNNNNATC	2 cut(s)	729, 1453
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	4 cut(s)	519, 944, 1208, 1325
Bse118I	RCCGGY	1 cut(s)	1208
Bse1I	ACTGG	6 cut(s)	610, 938, 966, 1097, 1103, 1202
Bse3DI	GCAATG	1 cut(s)	900
Bse8I	GATNNNNATC	2 cut(s)	729, 1453
BseBI	CCWGG	1 cut(s)	1089
BseGI	GGATG	2 cut(s)	844, 1162
BseJI	GATNNNNATC	2 cut(s)	729, 1453
BseLI	CCNNNNNNNGG	4 cut(s)	519, 944, 1208, 1325
BseMI	GCAATG	1 cut(s)	900
BseMII	CTCAG	7 cut(s)	264, 343, 407, 570, 644, 1152, 1245
BseNI	ACTGG	6 cut(s)	610, 938, 966, 1097, 1103, 1202
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	878, 1198
BseYI	CCCAGC	1 cut(s)	944
Bsh1236I	CGCG	1 cut(s)	988
BshFI	GGCC	6 cut(s)	335, 958, 996, 1006, 1177, 1208
BsiHKAI	GWGCWC	3 cut(s)	195, 384, 1377
BsiHKCI	CYCGRG	2 cut(s)	194, 565
BsiSI	CCGG	1 cut(s)	1209
BslI	CCNNNNNNNGG	4 cut(s)	519, 944, 1208, 1325
BsmI	GAATGC	3 cut(s)	775, 917, 1286
BsnI	GGCC	6 cut(s)	335, 958, 996, 1006, 1177, 1208
BsoBI	CYCGRG	2 cut(s)	194, 565
Bsp119I	TTCGAA	1 cut(s)	250
Bsp1286I	GDGCHC	3 cut(s)	195, 384, 1377
Bsp143I	GATC	7 cut(s)	157, 276, 304, 598, 724, 748, 1009
Bsp1720I	GCTNAGC	1 cut(s)	1254
BspACI	CCGC	3 cut(s)	482, 646, 1258
BspANI	GGCC	6 cut(s)	335, 958, 996, 1006, 1177, 1208
BspCNI	CTCAG	7 cut(s)	265, 342, 408, 571, 643, 1151, 1246
BspFNI	CGCG	1 cut(s)	988
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	1236
BspPI	GGATC	1 cut(s)	1004
BspT104I	TTCGAA	1 cut(s)	250
BspTI	CTTAAG	1 cut(s)	5
BsrBI	CCGCTC	1 cut(s)	1258
BsrDI	GCAATG	1 cut(s)	900
BsrFI	RCCGGY	1 cut(s)	1208
BsrI	ACTGG	6 cut(s)	610, 938, 966, 1097, 1103, 1202
BssAI	RCCGGY	1 cut(s)	1208
BssMI	GATC	7 cut(s)	157, 276, 304, 598, 724, 748, 1009
Bst2UI	CCWGG	1 cut(s)	1089
Bst4CI	ACNGT	2 cut(s)	432, 1168
Bst6I	CTCTTC	2 cut(s)	309, 886
BstAFI	CTTAAG	1 cut(s)	5
BstAPI	GCANNNNNTGC	2 cut(s)	1192, 1290
BstBI	TTCGAA	1 cut(s)	250
BstC8I	GCNNGC	5 cut(s)	502, 854, 960, 1197, 1286
BstDEI	CTNAG	7 cut(s)	273, 329, 416, 579, 630, 1138, 1254
BstF5I	GGATG	2 cut(s)	844, 1162
BstFNI	CGCG	1 cut(s)	988
BstKTI	GATC	7 cut(s)	160, 279, 307, 601, 727, 751, 1012
BstMBI	GATC	7 cut(s)	157, 276, 304, 598, 724, 748, 1009
BstMWI	GCNNNNNNNGC	5 cut(s)	941, 1183, 1192, 1205, 1290
BstNI	CCWGG	1 cut(s)	1089
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	1087
BstSFI	CTRYAG	2 cut(s)	476, 1167
BstUI	CGCG	1 cut(s)	988
BstV1I	GCAGC	2 cut(s)	878, 1198
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	598
BstXI	CCANNNNNNTGG	1 cut(s)	973
BstYI	RGATCY	1 cut(s)	598
BsuI	GTATCC	1 cut(s)	970
BsuRI	GGCC	6 cut(s)	335, 958, 996, 1006, 1177, 1208
BtsCI	GGATG	2 cut(s)	844, 1162
BtsI	GCAGTG	1 cut(s)	1295
BtsIMutI	CAGTG	4 cut(s)	1164, 1209, 1295, 1341
Cac8I	GCNNGC	5 cut(s)	502, 854, 960, 1197, 1286
CaiI	CAGNNNCTG	1 cut(s)	944
CciI	TCATGA	1 cut(s)	279
Cfr10I	RCCGGY	1 cut(s)	1208
Cfr13I	GGNCC	2 cut(s)	333, 1004
CseI	GACGC	5 cut(s)	89, 768, 977, 994, 1316
Csp6I	GTAC	1 cut(s)	592
CviAII	CATG	6 cut(s)	136, 280, 528, 746, 1123, 1379
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	7 cut(s)	273, 329, 416, 579, 630, 1138, 1254
DpnI	GATC	7 cut(s)	159, 278, 306, 600, 726, 750, 1011
DpnII	GATC	7 cut(s)	157, 276, 304, 598, 724, 748, 1009
EaeI	YGGCCR	1 cut(s)	1206
Eam1104I	CTCTTC	2 cut(s)	309, 886
EarI	CTCTTC	2 cut(s)	309, 886
EciI	GGCGGA	1 cut(s)	497
Ecl136II	GAGCTC	2 cut(s)	193, 382
Eco24I	GRGCYC	2 cut(s)	195, 384
Eco53kI	GAGCTC	2 cut(s)	193, 382
Eco88I	CYCGRG	2 cut(s)	194, 565
EcoICRI	GAGCTC	2 cut(s)	193, 382
EcoRII	CCWGG	1 cut(s)	1087
EcoT38I	GRGCYC	2 cut(s)	195, 384
FaeI	CATG	6 cut(s)	139, 283, 531, 749, 1126, 1382
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FatI	CATG	6 cut(s)	135, 279, 527, 745, 1122, 1378
FauI	CCCGC	1 cut(s)	1251
FbaI	TGATCA	2 cut(s)	304, 724
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	2 cut(s)	867, 1187
FokI	GGATG	2 cut(s)	851, 1169
FriOI	GRGCYC	2 cut(s)	195, 384
Fsp4HI	GCNGC	2 cut(s)	867, 1187
FspBI	CTAG	4 cut(s)	437, 450, 870, 981
GluI	GCNGC	2 cut(s)	867, 1187
GsaI	CCCAGC	1 cut(s)	948
GsuI	CTGGAG	2 cut(s)	1185, 1410
HaeIII	GGCC	6 cut(s)	335, 958, 996, 1006, 1177, 1208
HapII	CCGG	1 cut(s)	1209
HgaI	GACGC	5 cut(s)	89, 768, 977, 994, 1316
Hin1II	CATG	6 cut(s)	139, 283, 531, 749, 1126, 1382
HincII	GTYRAC	2 cut(s)	368, 783
HindII	GTYRAC	2 cut(s)	368, 783
HindIII	AAGCTT	2 cut(s)	293, 653
HinfI	GANTC	4 cut(s)	67, 524, 554, 1454
HpaII	CCGG	1 cut(s)	1209
Hpy166II	GTNNAC	6 cut(s)	18, 368, 572, 594, 783, 1162
Hpy188I	TCNGA	7 cut(s)	62, 274, 300, 417, 768, 1141, 1459
Hpy188III	TCNNGA	6 cut(s)	161, 280, 308, 757, 1028, 1427
Hpy8I	GTNNAC	6 cut(s)	18, 368, 572, 594, 783, 1162
HpyAV	CCTTC	6 cut(s)	513, 901, 1319, 1325, 1376, 1424
HpyCH4III	ACNGT	2 cut(s)	432, 1168
HpyCH4V	TGCA	4 cut(s)	792, 905, 1284, 1293
HpyF10VI	GCNNNNNNNGC	5 cut(s)	941, 1183, 1192, 1205, 1290
HpyF3I	CTNAG	7 cut(s)	273, 329, 416, 579, 630, 1138, 1254
Hsp92II	CATG	6 cut(s)	139, 283, 531, 749, 1126, 1382
Ksp22I	TGATCA	2 cut(s)	304, 724
Kzo9I	GATC	7 cut(s)	157, 276, 304, 598, 724, 748, 1009
LmnI	GCTCC	6 cut(s)	190, 379, 387, 1117, 1204, 1417
Lsp1109I	GCAGC	2 cut(s)	878, 1198
LweI	GCATC	2 cut(s)	271, 1182
MaeI	CTAG	4 cut(s)	437, 450, 870, 981
MaeIII	GTNAC	3 cut(s)	445, 508, 821
MalI	GATC	7 cut(s)	159, 278, 306, 600, 726, 750, 1011
MbiI	CCGCTC	1 cut(s)	1258
MboI	GATC	7 cut(s)	157, 276, 304, 598, 724, 748, 1009
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	3 cut(s)	195, 384, 1377
MluCI	AATT	8 cut(s)	41, 149, 241, 338, 345, 858, 1264, 1360
MluI	ACGCGT	1 cut(s)	986
MmeI	TCCRAC	1 cut(s)	675
MroXI	GAANNNNTTC	3 cut(s)	294, 523, 1083
MseI	TTAA	3 cut(s)	6, 152, 207
MslI	CAYNNNNRTG	2 cut(s)	910, 1383
MspCI	CTTAAG	1 cut(s)	5
MspI	CCGG	1 cut(s)	1209
MspR9I	CCNGG	1 cut(s)	1089
Mva1269I	GAATGC	3 cut(s)	775, 917, 1286
MvaI	CCWGG	1 cut(s)	1089
MvnI	CGCG	1 cut(s)	988
MwoI	GCNNNNNNNGC	5 cut(s)	941, 1183, 1192, 1205, 1290
NdeII	GATC	7 cut(s)	157, 276, 304, 598, 724, 748, 1009
NlaIII	CATG	6 cut(s)	139, 283, 531, 749, 1126, 1382
NlaIV	GGNNCC	1 cut(s)	1236
NmuCI	GTSAC	1 cut(s)	508
NspI	RCATGY	1 cut(s)	139
NspV	TTCGAA	1 cut(s)	250
PagI	TCATGA	1 cut(s)	279
PctI	GAATGC	3 cut(s)	775, 917, 1286
PdmI	GAANNNNTTC	3 cut(s)	294, 523, 1083
PfeI	GAWTC	4 cut(s)	67, 524, 554, 1454
PflFI	GACNNNGTC	2 cut(s)	83, 1310
PflMI	CCANNNNNTGG	1 cut(s)	944
PkrI	GCNGC	2 cut(s)	868, 1188
Psp124BI	GAGCTC	2 cut(s)	195, 384
Psp6I	CCWGG	1 cut(s)	1087
PspFI	CCCAGC	1 cut(s)	944
PspGI	CCWGG	1 cut(s)	1087
PspN4I	GGNNCC	1 cut(s)	1236
PspPI	GGNCC	2 cut(s)	333, 1004
PstNI	CAGNNNCTG	1 cut(s)	944
PsuI	RGATCY	1 cut(s)	598
PsyI	GACNNNGTC	2 cut(s)	83, 1310
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
RseI	CAYNNNNRTG	2 cut(s)	910, 1383
SacI	GAGCTC	2 cut(s)	195, 384
SaqAI	TTAA	3 cut(s)	6, 152, 207
SatI	GCNGC	2 cut(s)	867, 1187
Sau3AI	GATC	7 cut(s)	157, 276, 304, 598, 724, 748, 1009
Sau96I	GGNCC	2 cut(s)	333, 1004
ScrFI	CCNGG	1 cut(s)	1089
SduI	GDGCHC	3 cut(s)	195, 384, 1377
SfaNI	GCATC	2 cut(s)	271, 1182
SfcI	CTRYAG	2 cut(s)	476, 1167
SfuI	TTCGAA	1 cut(s)	250
SmiMI	CAYNNNNRTG	2 cut(s)	910, 1383
SmlI	CTYRAG	2 cut(s)	5, 1040
SmoI	CTYRAG	2 cut(s)	5, 1040
SpeI	ACTAGT	1 cut(s)	449
Sse9I	AATT	8 cut(s)	41, 149, 241, 338, 345, 858, 1264, 1360
SsiI	CCGC	3 cut(s)	482, 646, 1258
SspI	AATATT	1 cut(s)	1444
SspMI	CTAG	4 cut(s)	437, 450, 870, 981
SstI	GAGCTC	2 cut(s)	195, 384
StyD4I	CCNGG	1 cut(s)	1087
TaaI	ACNGT	2 cut(s)	432, 1168
TaqI	TCGA	2 cut(s)	250, 756
TasI	AATT	8 cut(s)	41, 149, 241, 338, 345, 858, 1264, 1360
TatI	WGTACW	1 cut(s)	591
TfiI	GAWTC	4 cut(s)	67, 524, 554, 1454
Tru1I	TTAA	3 cut(s)	6, 152, 207
Tru9I	TTAA	3 cut(s)	6, 152, 207
TscAI	CASTG	4 cut(s)	1171, 1209, 1295, 1348
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	2 cut(s)	866, 1186
Tsp45I	GTSAC	1 cut(s)	508
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	4 cut(s)	1171, 1209, 1295, 1348
Tth111I	GACNNNGTC	2 cut(s)	83, 1310
Van91I	CCANNNNNTGG	1 cut(s)	944
Vha464I	CTTAAG	1 cut(s)	5
XapI	RAATTY	3 cut(s)	241, 345, 1264
XceI	RCATGY	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1434
XmiI	GTMKAC	1 cut(s)	17
XmnI	GAANNNNTTC	3 cut(s)	294, 523, 1083
XspI	CTAG	4 cut(s)	437, 450, 870, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.