Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005015.1

Orthogroup ID

OG0007401

Physical Location & Seq

Genomic Coordinates Forward (+)

89 .. 1174

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005015.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atgctcccccataataaactggaagacgaaagtgatttattgagaaatgatcagaatccatcaactttccatgatcttgaagataaaaatcaacatgcttctccagctgcttgtaacataaagaaaatgaagaatgaaatcagttttaacaataacttgaatgagggcaaagtacaaaaaccaattcaagcaacaagtcctttctcttctacttctgtttcacccaaatgtccttccactgtaaaatctgctccagtagctggtagaaagcggtctgcatcgtcctggatagacacgagatcccgccaaggccaaaatgggactgacccacacgatgattttcttgacaccccgattgagaacgtaagagcaaacttgaatagatcaacaaaggaaaaagttactgatcttccagttccagttcaaaatgactcaaatttaggtagctctgatgatgaaacacaggatgtgactgctgatcatcctcggctaccaaagcagcatatgccagttacagtggctggcaaaaatggtttcaagtatgtggaacctgtaagaaagagggctgagcgggaaaatttgaaaggagttgaatgcaaacagtgcaaaaagttttatgatgctgttcttccagatgatggtggcaaggacaatggtactaataagcatgatttccgctgtgagcatcatgaaggtgtttctcgacacaggtataggtatcttcccccttcaactcccgaaggattttggaatattggatttgaatctgaaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0006950 GO:0006974 GO:0007276 GO:0008150 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0019953 GO:0022414 GO:0032501 GO:0032504 GO:0033554 GO:0044703 GO:0048609 GO:0050896 GO:0051704 GO:0051716

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAE2

Protein Analysis

258

Amino Acids

29.01

Weight (kDa)

6.8

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52115
fragaria_vesca	FvH4_7g00721 FvH4_7g00721 FvH4_7g00721
malus_domestica	MD02G1315100.v1.1 MD07G1006900.v1.1
prunus_persica	Prupe.2G009900_v2.0.a1 Prupe.2G009900_v2.0.a1 Prupe.2G009900_v2.0.a1
pyrus_communis	pycom02g26410 pycom07g00550
rosa_chinensis	RchiOBHm_Chr1g0314941
rosa_laevigata	RLG00000030753
rosa_multiflora	Rmu_sc0005015.1_g000001 Rmu_sc0005168.1_g000010 Rmu_sc0026403.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331660
rosa_rugosa	Rorug01G0003100 Rorug01G0003200.1 Rorug01G0003300
rosa_samantha	Rh1AG014100 Rh1BG005800 Rh1CG012300 Rh1DG007700
rosa_wichuraiana	Rw1G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	260, 638
AccBSI	CCGCTC	1 cut(s)	571
AciI	CCGC	4 cut(s)	271, 304, 571, 676
AclWI	GGATC	1 cut(s)	294
AcsI	RAATTY	2 cut(s)	436, 577
AfaI	GTAC	2 cut(s)	174, 658
AfiI	CCNNNNNNNGG	2 cut(s)	260, 638
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	3 cut(s)	107, 260, 447
AluI	AGCT	3 cut(s)	107, 260, 447
AlwI	GGATC	1 cut(s)	294
AlwNI	CAGNNNCTG	2 cut(s)	260, 521
AoxI	GGCC	1 cut(s)	310
ApeKI	GCWGC	2 cut(s)	107, 499
ApoI	RAATTY	2 cut(s)	436, 577
AsuHPI	GGTGA	1 cut(s)	213
BauI	CACGAG	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	94, 511
BccI	CCATC	2 cut(s)	67, 632
BciT130I	CCWGG	1 cut(s)	286
BclI	TGATCA	2 cut(s)	49, 478
BisI	GCNGC	2 cut(s)	108, 500
BlpI	GCTNAGC	1 cut(s)	567
BlsI	GCNGC	2 cut(s)	109, 501
Bme1390I	CCNGG	1 cut(s)	286
BmiI	GGNNCC	1 cut(s)	549
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	3 cut(s)	287, 610, 694
BpiI	GAAGAC	1 cut(s)	30
BpmI	CTGGAG	2 cut(s)	87, 237
Bpu1102I	GCTNAGC	1 cut(s)	567
BsaBI	GATNNNNATC	3 cut(s)	54, 87, 763
BsaJI	CCNNGG	2 cut(s)	307, 485
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 638
Bse1I	ACTGG	5 cut(s)	24, 254, 413, 419, 509
Bse8I	GATNNNNATC	3 cut(s)	54, 87, 763
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	2 cut(s)	307, 485
BseGI	GGATG	2 cut(s)	472, 481
BseJI	GATNNNNATC	3 cut(s)	54, 87, 763
BseLI	CCNNNNNNNGG	2 cut(s)	260, 638
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	5 cut(s)	24, 254, 413, 419, 509
BseXI	GCAGC	2 cut(s)	94, 511
BshFI	GGCC	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	2 cut(s)	260, 638
BsmFI	GGGAC	1 cut(s)	334
BsmI	GAATGC	1 cut(s)	599
BsnI	GGCC	1 cut(s)	312
Bsp143I	GATC	6 cut(s)	49, 73, 299, 383, 406, 478
Bsp1720I	GCTNAGC	1 cut(s)	567
BspACI	CCGC	4 cut(s)	271, 304, 571, 676
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	1 cut(s)	559
BspHI	TCATGA	1 cut(s)	688
BspLI	GGNNCC	1 cut(s)	549
BspPI	GGATC	1 cut(s)	294
BsrBI	CCGCTC	1 cut(s)	571
BsrI	ACTGG	5 cut(s)	24, 254, 413, 419, 509
BssECI	CCNNGG	2 cut(s)	307, 485
BssMI	GATC	6 cut(s)	49, 73, 299, 383, 406, 478
BssSI	CACGAG	1 cut(s)	295
BssT1I	CCWWGG	1 cut(s)	307
Bst2BI	CACGAG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	3 cut(s)	241, 517, 603
Bst6I	CTCTTC	1 cut(s)	211
BstAPI	GCANNNNNTGC	2 cut(s)	505, 603
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	1 cut(s)	567
BstF5I	GGATG	2 cut(s)	472, 481
BstKTI	GATC	6 cut(s)	52, 76, 302, 386, 409, 481
BstMBI	GATC	6 cut(s)	49, 73, 299, 383, 406, 478
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 257, 496, 505, 603
BstNI	CCWGG	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	284
BstV1I	GCAGC	2 cut(s)	94, 511
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	472, 481
BtsIMutI	CAGTG	3 cut(s)	237, 522, 608
Cac8I	GCNNGC	1 cut(s)	523
CaiI	CAGNNNCTG	2 cut(s)	260, 521
CciI	TCATGA	1 cut(s)	688
Csp6I	GTAC	2 cut(s)	173, 657
CviAII	CATG	4 cut(s)	71, 95, 668, 689
CviJI	RGCY	7 cut(s)	107, 260, 312, 447, 490, 521, 566
CviKI_1	RGCY	7 cut(s)	107, 260, 312, 447, 490, 521, 566
CviQI	GTAC	2 cut(s)	173, 657
DdeI	CTNAG	1 cut(s)	567
DpnI	GATC	6 cut(s)	51, 75, 301, 385, 408, 480
DpnII	GATC	6 cut(s)	49, 73, 299, 383, 406, 478
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	284
EcoT14I	CCWWGG	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	4 cut(s)	74, 98, 671, 692
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	4 cut(s)	70, 94, 667, 688
FauI	CCCGC	2 cut(s)	311, 564
FauNDI	CATATG	1 cut(s)	504
FbaI	TGATCA	2 cut(s)	49, 478
Fnu4HI	GCNGC	2 cut(s)	108, 500
FokI	GGATG	2 cut(s)	468, 479
Fsp4HI	GCNGC	2 cut(s)	108, 500
GluI	GCNGC	2 cut(s)	108, 500
GsuI	CTGGAG	2 cut(s)	87, 237
HaeIII	GGCC	1 cut(s)	312
Hin1II	CATG	4 cut(s)	74, 98, 671, 692
HinfI	GANTC	3 cut(s)	55, 431, 764
HphI	GGTGA	1 cut(s)	213
Hpy188I	TCNGA	3 cut(s)	54, 451, 769
Hpy188III	TCNNGA	6 cut(s)	77, 344, 632, 689, 702, 737
HpyAV	CCTTC	4 cut(s)	243, 686, 734, 738
HpyCH4III	ACNGT	3 cut(s)	241, 517, 603
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	3 cut(s)	278, 597, 606
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 257, 496, 505, 603
HpyF3I	CTNAG	1 cut(s)	567
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	4 cut(s)	74, 98, 671, 692
Ksp22I	TGATCA	2 cut(s)	49, 478
Kzo9I	GATC	6 cut(s)	49, 73, 299, 383, 406, 478
LmnI	GCTCC	2 cut(s)	9, 256
Lsp1109I	GCAGC	2 cut(s)	94, 511
LweI	GCATC	3 cut(s)	287, 610, 694
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	4 cut(s)	113, 400, 469, 511
MalI	GATC	6 cut(s)	51, 75, 301, 385, 408, 480
MbiI	CCGCTC	1 cut(s)	571
MboI	GATC	6 cut(s)	49, 73, 299, 383, 406, 478
MboII	GAAGA	7 cut(s)	35, 92, 142, 198, 401, 620, 713
MflI	RGATCY	1 cut(s)	299
MluCI	AATT	3 cut(s)	183, 436, 577
MlyI	GAGTC	1 cut(s)	425
MnlI	CCTC	3 cut(s)	157, 495, 555
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	2 cut(s)	226, 693
MspA1I	CMGCKG	2 cut(s)	107, 678
MspR9I	CCNGG	1 cut(s)	286
Mva1269I	GAATGC	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	5 cut(s)	104, 257, 496, 505, 603
NdeI	CATATG	1 cut(s)	504
NdeII	GATC	6 cut(s)	49, 73, 299, 383, 406, 478
NlaIII	CATG	4 cut(s)	74, 98, 671, 692
NlaIV	GGNNCC	1 cut(s)	549
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	469
NspI	RCATGY	1 cut(s)	98
PagI	TCATGA	1 cut(s)	688
PctI	GAATGC	1 cut(s)	599
PfeI	GAWTC	2 cut(s)	55, 764
PflMI	CCANNNNNTGG	2 cut(s)	260, 638
PfoI	TCCNGGA	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	109, 501
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	549
PstNI	CAGNNNCTG	2 cut(s)	260, 521
PsuI	RGATCY	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	2 cut(s)	174, 658
RsaNI	GTAC	2 cut(s)	173, 657
RseI	CAYNNNNRTG	2 cut(s)	226, 693
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	2 cut(s)	108, 500
Sau3AI	GATC	6 cut(s)	49, 73, 299, 383, 406, 478
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	1 cut(s)	286
SetI	ASST	9 cut(s)	109, 262, 366, 445, 449, 553, 697, 713, 719
SfaNI	GCATC	3 cut(s)	287, 610, 694
SmiMI	CAYNNNNRTG	2 cut(s)	226, 693
Sse9I	AATT	3 cut(s)	183, 436, 577
SsiI	CCGC	4 cut(s)	271, 304, 571, 676
SspI	AATATT	1 cut(s)	754
StyD4I	CCNGG	1 cut(s)	284
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	3 cut(s)	241, 517, 603
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	1 cut(s)	703
TasI	AATT	3 cut(s)	183, 436, 577
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	2 cut(s)	55, 764
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	3 cut(s)	244, 522, 608
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	2 cut(s)	107, 499
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	4 cut(s)	143, 150, 471, 705
TspRI	CASTG	3 cut(s)	244, 522, 608
Van91I	CCANNNNNTGG	2 cut(s)	260, 638
XapI	RAATTY	2 cut(s)	436, 577
XceI	RCATGY	1 cut(s)	98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.