Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007401

Physical Location & Seq

Genomic Coordinates Forward (+)

652687 .. 654374

Gene Structure 1688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0003100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCAGAGGAAGGGAAGCCAGATGCCCAATTGTTCCACCTACTCTCTGGTCTCCTCCACCAGGTGGAAGCATTGACCAATCAAGAAGAAGTTGAATTGCGTTCAAAAATTGAAGCCCTTGGATTAGAGGTTACCAAAGTTCCCTCAAAGTCAACTCAGCATCTTGATGAGCTGGAAATAGCCAAGGAATTGGATGAATTATCTTCAAAGTTGGATGATGTAGATGAAATGATATCTTCAGCAATGGCTTCAGATCCTCAGGTCAAGTCACTATTGAGTGGTACTGCTGATGTATGGATGCCGGTCATTACTGCTAGTGCTGATGAACGGTGTACTTTCACAGCATCAAACCCAGAAGCAAAAGGGAAAAGTTTCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

126

Amino Acids

13.69

Weight (kDa)

4.46

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52115
fragaria_vesca	FvH4_7g00721 FvH4_7g00721 FvH4_7g00721
malus_domestica	MD02G1315100.v1.1 MD07G1006900.v1.1
prunus_persica	Prupe.2G009900_v2.0.a1 Prupe.2G009900_v2.0.a1 Prupe.2G009900_v2.0.a1
pyrus_communis	pycom02g26410 pycom07g00550
rosa_chinensis	RchiOBHm_Chr1g0314941
rosa_laevigata	RLG00000030753
rosa_multiflora	Rmu_sc0005015.1_g000001 Rmu_sc0005168.1_g000010 Rmu_sc0026403.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331660
rosa_rugosa	Rorug01G0003100 Rorug01G0003200.1 Rorug01G0003300
rosa_samantha	Rh1AG014100 Rh1BG005800 Rh1CG012300 Rh1DG007700
rosa_wichuraiana	Rw1G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	64
AclWI	GGATC	1 cut(s)	248
AcuI	CTGAAG	2 cut(s)	222, 234
AdeI	CACNNNGTG	1 cut(s)	64
AfaI	GTAC	2 cut(s)	283, 334
AfiI	CCNNNNNNNGG	2 cut(s)	61, 64
AgsI	TTSAA	4 cut(s)	95, 105, 113, 207
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	248
Asp700I	GAANNNNTTC	1 cut(s)	371
AxyI	CCTNAGG	1 cut(s)	258
BciT130I	CCWGG	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	1 cut(s)	315
Bme1390I	CCNGG	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	62
BmsI	GCATC	4 cut(s)	13, 169, 288, 353
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	118, 183
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 64
Bse118I	RCCGGY	1 cut(s)	301
Bse21I	CCTNAGG	1 cut(s)	258
Bse3DI	GCAATG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	2 cut(s)	118, 183
BseGI	GGATG	3 cut(s)	199, 220, 303
BseLI	CCNNNNNNNGG	2 cut(s)	61, 64
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	2 cut(s)	170, 272
BseRI	GAGGAG	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	302
BslI	CCNNNNNNNGG	2 cut(s)	61, 64
BsmAI	GTCTC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	253
BspCNI	CTCAG	2 cut(s)	169, 271
BspPI	GGATC	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	2 cut(s)	118, 183
BssMI	GATC	1 cut(s)	253
BssT1I	CCWWGG	2 cut(s)	118, 183
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	330
BstDEI	CTNAG	2 cut(s)	156, 258
BstEII	GGTNACC	1 cut(s)	130
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	3 cut(s)	199, 220, 303
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	253
BstNI	CCWGG	1 cut(s)	62
BstPI	GGTNACC	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	253
BstXI	CCANNNNNNTGG	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	253
Bsu36I	CCTNAGG	1 cut(s)	258
BtsCI	GGATG	3 cut(s)	199, 220, 303
Cfr10I	RCCGGY	1 cut(s)	301
CsiI	ACCWGGT	1 cut(s)	60
Csp6I	GTAC	2 cut(s)	282, 333
CviJI	RGCY	5 cut(s)	19, 116, 172, 182, 248
CviKI_1	RGCY	5 cut(s)	19, 116, 172, 182, 248
CviQI	GTAC	2 cut(s)	282, 333
DdeI	CTNAG	2 cut(s)	156, 258
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
DraIII	CACNNNGTG	1 cut(s)	64
Eco130I	CCWWGG	2 cut(s)	118, 183
Eco31I	GGTCTC	1 cut(s)	56
Eco32I	GATATC	1 cut(s)	234
Eco57I	CTGAAG	2 cut(s)	222, 234
Eco81I	CCTNAGG	1 cut(s)	258
Eco91I	GGTNACC	1 cut(s)	130
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoO65I	GGTNACC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	60
EcoRV	GATATC	1 cut(s)	234
EcoT14I	CCWWGG	2 cut(s)	118, 183
ErhI	CCWWGG	2 cut(s)	118, 183
FaiI	YATR	1 cut(s)	295
FokI	GGATG	3 cut(s)	206, 227, 310
FspBI	CTAG	1 cut(s)	315
HapII	CCGG	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HpaII	CCGG	1 cut(s)	302
Hpy166II	GTNNAC	2 cut(s)	153, 333
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	2 cut(s)	83, 164
Hpy8I	GTNNAC	2 cut(s)	153, 333
HpyAV	CCTTC	1 cut(s)	5
HpyCH4III	ACNGT	1 cut(s)	330
HpyF3I	CTNAG	2 cut(s)	156, 258
Kzo9I	GATC	1 cut(s)	253
LpnPI	CCDG	8 cut(s)	33, 33, 47, 74, 158, 245, 315, 366
LweI	GCATC	4 cut(s)	13, 169, 288, 353
MabI	ACCWGGT	1 cut(s)	60
MaeI	CTAG	1 cut(s)	315
MaeIII	GTNAC	2 cut(s)	130, 267
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	3 cut(s)	98, 195, 228
MfeI	CAATTG	1 cut(s)	29
MflI	RGATCY	1 cut(s)	253
MluCI	AATT	5 cut(s)	29, 95, 108, 188, 197
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	4 cut(s)	65, 121, 154, 267
MroXI	GAANNNNTTC	1 cut(s)	371
MseI	TTAA	1 cut(s)	379
MslI	CAYNNNNRTG	1 cut(s)	165
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	1 cut(s)	62
MunI	CAATTG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	62
NdeII	GATC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	371
PflMI	CCANNNNNTGG	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	60
PspEI	GGTNACC	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	253
RsaI	GTAC	2 cut(s)	283, 334
RsaNI	GTAC	2 cut(s)	282, 333
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	379
Sau3AI	GATC	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	62
SetI	ASST	5 cut(s)	42, 66, 132, 174, 264
SexAI	ACCWGGT	1 cut(s)	60
SfaNI	GCATC	4 cut(s)	13, 169, 288, 353
SmiMI	CAYNNNNRTG	1 cut(s)	165
Sse9I	AATT	5 cut(s)	29, 95, 108, 188, 197
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	2 cut(s)	118, 183
TaaI	ACNGT	1 cut(s)	330
TasI	AATT	5 cut(s)	29, 95, 108, 188, 197
TatI	WGTACW	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	379
Tru9I	TTAA	1 cut(s)	379
TseFI	GTSAC	1 cut(s)	267
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	3 cut(s)	210, 240, 339
Van91I	CCANNNNNTGG	1 cut(s)	64
XagI	CCTNNNNNAGG	1 cut(s)	59
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	371
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.