RLG00000030753

Protein gamma response

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007401
Physical Location & Seq
Forward (+)
66904409 .. 66907854
3446 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030753

Sequence Viewer

Length: 2013 bp
ATGTCTCAAGGATGGATTGATGTTTCGTGCTGTAAATCCAAGTCAGTCTTACCACCTAGGCTTGCGGAAGAATTGTGGGGAATAACTAATAAAATCAAATTATATGCCTCTCCAACCCTAGAAGAACCCAACCCAAACTGGCCCAGATCTTCTACCCTCTTCCATTTCTACTCAGGGGCTGCAGAGAAGAGCGGAATCGAAATCGGAACCGGAATCGGAATCGGAATCGGACTATTAGACTTCCGGCGTGCACCTATTGAATTCAGAATTTGGGGATGGAGGAGACTACCAGACAAATTTGAAGCTAAAGACAGAATTCAGGAAACCAAAGACCAGGTTGACCAGATCGAATATGTCTTCCTTGCTCAGCTATACCCCTTATTGCAGTCCAAGTCCGAAACTCTCCTGAAATTTCAAGATGAGTGGAAATCCAAGGAAGCTAATCTCTTGCTTCAAATTGAAACACTTCGAGCTGAAAACGAACTAATCGTTGAAGAGAACTGCTCACTCAAGCTTGGCAGGGAAAAGCTGTTCGGAGAAAAGGAAGACATGATAAACCAACTGCGAGATGAAGTGACAGGCCTACAACTAAGGAGTGATGAGCTGGAACAAATGCTTGACCACAAGTCTAAGGAAGCGGATGAGGGAATGGAATTGCGGAGTAAGTTGCTCGAAGAGGTTAGATTGAAAGACAGTGTTATTGTGAGTAAGGAAAAACAGCTGAAAGAGAGTGGAGAAAGTAGAAATGTGCTTTTTGCGAAAGTGAGTGATCTTGAAAAAAGAGCTGATGAGCTCAAACAAAATCTGTTCAAGAAGATTGAGTTACAAGCTTCTGAGATCACGAACAATGAAAAGCTTTTGAAGTATCGGGAAGAAGAGAAAAAACTGATGCTGACCAAATTGAAAAATGTGGAAGAAAATGTTAGCCAACTCCAGAAGGAGCTCCTAACAAAGAATGAAGAAGTGGAAGATTGTGCAAGAGAGAAAAAACTTCTTCTGAGAAAAATGACTGGTTTAGAGGAGAAAGTTAATGAGCTACAAGGGGATCTCAGAGGCAGGGCCGGTGAAGGGGCCAAAAGAAGGGGTTCGACTGAAAATTTACACCAAGAGGTTGAATCAATAACCGCAGATTTACTGACCGAGAGGAAGAAGTACGGGGAACTTACTGCTGCTTACAAAAGTCTGAAATCTCAGCACACTTATCTCCGCAGCAAATATGGTCTGACCAAGGAGAATATGCTCCCCCATAATAAACTGGAAGATGAAAGTGATTTATTGAGAAATGATCAGAATCCATCAACTTTCCATGATCTTGAAGATAAAAATCAACATGCTTCTCCAGCTGCTTGTAACATAAAGAAAATGAAGAATGAAATCAGTTTTAGCAATAACTTGAATGAGGGCAAAGTACAAAAACCAATTCAAGCAACAAGTCCTTTCTCTTCTACTTCTGTTTCACCCAAATGTCCTTCCACTGTAAAATCTGCTCCAGTAGCTGGTAGAAAGCGGTCTGCATCGTCCTGGATAGACACGAGATCCCGCCAAGGCCAAAATGGGACTGCCCCACACGATGATTTTCTTGACACCCCGATTGAGAACGTAAGAGCAAACTTGAATAGATCAACAAAGGAAAAAGTTACTGATCTTCCAGTTCCAGTTCAAAATGACTCAAATTTAGGTAGCTCTGATGATGAAACACAGGATGTGACTGCTGATCATCCTAGGCTACCAAAGCAGCATATGCCAGTTACAGTGGCTGGCAAAAATGGTTTCAAGTATGTGGAACCTGTAAGAAAGAGGGCTGAGCGGGAAAATTTGAAAGGAGTTGAATGCAAACAGTGCAAAAAGTTTTACGATGCTGTTCTTCCAGATGATGGTGGCAAGGACAATGATAACAATAAGCATGATTTCCGCTGTGAGCATCATGAAGGTGTTTCTCGACACAGGTATAGGTATCTTCCCCCTTCAACTCCCGAAGGATTTTGGAATATTGGATTTGAATCTGAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0006950 GO:0006974 GO:0007276 GO:0008150 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0019953 GO:0022414 GO:0032501 GO:0032504 GO:0033554 GO:0044703 GO:0048609 GO:0050896 GO:0051704 GO:0051716
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAE2

Protein Analysis

671

Amino Acids

76.62

Weight (kDa)

6.36

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1496, 1874
AccBSI CCGCTC 2 cut(s) 192, 1807
AclWI GGATC 2 cut(s) 1053, 1530
AcsI RAATTY 8 cut(s) 260, 267, 296, 315, 410, 1096, 1672, 1813
AfaI GTAC 2 cut(s) 1154, 1410
AfiI CCNNNNNNNGG 4 cut(s) 1068, 1080, 1496, 1874
AhdI GACNNNNNGTC 1 cut(s) 625
AjnI CCWGG 2 cut(s) 333, 1520
AloI GAACNNNNNNTCC 2 cut(s) 515, 547
Alw21I GWGCWC 3 cut(s) 253, 795, 945
Alw26I GTCTC 2 cut(s) 9, 277
Alw44I GTGCAC 1 cut(s) 249
AlwI GGATC 2 cut(s) 1053, 1530
AlwNI CAGNNNCTG 3 cut(s) 179, 1496, 1757
AoxI GGCC 5 cut(s) 140, 580, 1059, 1071, 1546
ApaLI GTGCAC 1 cut(s) 249
ApeKI GCWGC 5 cut(s) 179, 1169, 1209, 1343, 1735
ApoI RAATTY 8 cut(s) 260, 267, 296, 315, 410, 1096, 1672, 1813
Asp700I GAANNNNTTC 2 cut(s) 465, 1084
AspA2I CCTAGG 2 cut(s) 56, 1721
AspS9I GGNCC 3 cut(s) 141, 1059, 1071
AsuHPI GGTGA 2 cut(s) 1076, 1449
AvrII CCTAGG 2 cut(s) 56, 1721
BaeGI GKGCMC 1 cut(s) 253
BanII GRGCYC 2 cut(s) 795, 945
BauI CACGAG 1 cut(s) 1531
BbsI GAAGAC 2 cut(s) 349, 552
Bbv12I GWGCWC 3 cut(s) 253, 795, 945
BbvI GCAGC 5 cut(s) 166, 1156, 1221, 1330, 1747
BccI CCATC 4 cut(s) 6, 270, 1303, 1868
BciT130I CCWGG 2 cut(s) 335, 1522
BclI TGATCA 2 cut(s) 1285, 1714
BcoDI GTCTC 2 cut(s) 9, 277
BfaI CTAG 3 cut(s) 57, 119, 1722
BfmI CTRYAG 1 cut(s) 180
BglII AGATCT 1 cut(s) 146
BisI GCNGC 5 cut(s) 180, 1170, 1210, 1344, 1736
BlnI CCTAGG 2 cut(s) 56, 1721
BlpI GCTNAGC 2 cut(s) 366, 1803
BlsI GCNGC 5 cut(s) 181, 1171, 1211, 1345, 1737
Bme1390I CCNGG 2 cut(s) 335, 1522
BmeRI GACNNNNNGTC 1 cut(s) 625
BmgT120I GGNCC 3 cut(s) 141, 1059, 1071
BmiI GGNNCC 3 cut(s) 208, 1072, 1785
BmrFI CCNGG 2 cut(s) 335, 1522
BmsI GCATC 4 cut(s) 879, 1523, 1846, 1930
BpiI GAAGAC 2 cut(s) 349, 552
BplI GAGNNNNNCTC 2 cut(s) 488, 520
BpmI CTGGAG 3 cut(s) 917, 1323, 1473
Bpu1102I GCTNAGC 2 cut(s) 366, 1803
BpuEI CTTGAG 1 cut(s) 494
BsaBI GATNNNNATC 3 cut(s) 1290, 1323, 1999
BsaJI CCNNGG 5 cut(s) 56, 432, 1227, 1543, 1721
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 4 cut(s) 1068, 1080, 1496, 1874
Bse118I RCCGGY 1 cut(s) 1061
Bse1I ACTGG 7 cut(s) 143, 1015, 1260, 1490, 1649, 1655, 1745
Bse8I GATNNNNATC 3 cut(s) 1290, 1323, 1999
BseBI CCWGG 2 cut(s) 335, 1522
BseDI CCNNGG 5 cut(s) 56, 432, 1227, 1543, 1721
BseGI GGATG 5 cut(s) 17, 281, 646, 1708, 1717
BseJI GATNNNNATC 3 cut(s) 1290, 1323, 1999
BseLI CCNNNNNNNGG 4 cut(s) 1068, 1080, 1496, 1874
BseMII CTCAG 7 cut(s) 186, 380, 825, 989, 1063, 1205, 1794
BseNI ACTGG 7 cut(s) 143, 1015, 1260, 1490, 1649, 1655, 1745
BseRI GAGGAG 2 cut(s) 295, 1034
BseSI GKGCMC 1 cut(s) 253
BseXI GCAGC 5 cut(s) 166, 1156, 1221, 1330, 1747
BshFI GGCC 5 cut(s) 142, 582, 1061, 1073, 1548
BsiHKAI GWGCWC 3 cut(s) 253, 795, 945
BsiSI CCGG 3 cut(s) 210, 244, 1062
BslFI GGGAC 1 cut(s) 1570
BslI CCNNNNNNNGG 4 cut(s) 1068, 1080, 1496, 1874
BsmAI GTCTC 2 cut(s) 9, 277
BsmFI GGGAC 1 cut(s) 1570
BsmI GAATGC 1 cut(s) 1835
BsnI GGCC 5 cut(s) 142, 582, 1061, 1073, 1548
Bsp1286I GDGCHC 3 cut(s) 253, 795, 945
Bsp1720I GCTNAGC 2 cut(s) 366, 1803
BspANI GGCC 5 cut(s) 142, 582, 1061, 1073, 1548
BspCNI CTCAG 7 cut(s) 185, 379, 826, 990, 1062, 1204, 1795
BspHI TCATGA 1 cut(s) 1924
BspLI GGNNCC 3 cut(s) 208, 1072, 1785
BspMAI CTGCAG 1 cut(s) 184
BspPI GGATC 2 cut(s) 1053, 1530
BspQI GCTCTTC 1 cut(s) 182
BsrBI CCGCTC 2 cut(s) 192, 1807
BsrFI RCCGGY 1 cut(s) 1061
BsrI ACTGG 7 cut(s) 143, 1015, 1260, 1490, 1649, 1655, 1745
BssAI RCCGGY 1 cut(s) 1061
BssECI CCNNGG 5 cut(s) 56, 432, 1227, 1543, 1721
BssSI CACGAG 1 cut(s) 1531
BssT1I CCWWGG 5 cut(s) 56, 432, 1227, 1543, 1721
Bst2BI CACGAG 1 cut(s) 1531
Bst2UI CCWGG 2 cut(s) 335, 1522
Bst4CI ACNGT 4 cut(s) 695, 1477, 1753, 1839
Bst6I CTCTTC 6 cut(s) 164, 182, 489, 669, 870, 1447
BstAPI GCANNNNNTGC 2 cut(s) 1741, 1839
BstC8I GCNNGC 3 cut(s) 63, 249, 1759
BstDEI CTNAG 9 cut(s) 172, 366, 590, 630, 834, 998, 1049, 1191, 1803
BstF5I GGATG 5 cut(s) 17, 281, 646, 1708, 1717
BstMAI GTCTC 2 cut(s) 9, 277
BstMWI GCNNNNNNNGC 5 cut(s) 1340, 1493, 1732, 1741, 1839
BstNI CCWGG 2 cut(s) 335, 1522
BstNSI RCATGY 1 cut(s) 1334
BstSCI CCNGG 2 cut(s) 333, 1520
BstSFI CTRYAG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 253
BstV1I GCAGC 5 cut(s) 166, 1156, 1221, 1330, 1747
BstV2I GAAGAC 2 cut(s) 349, 552
BstX2I RGATCY 3 cut(s) 146, 1045, 1535
BstYI RGATCY 3 cut(s) 146, 1045, 1535
BsuRI GGCC 5 cut(s) 142, 582, 1061, 1073, 1548
BtsCI GGATG 5 cut(s) 17, 281, 646, 1708, 1717
BtsIMutI CAGTG 4 cut(s) 700, 1473, 1758, 1844
Cac8I GCNNGC 3 cut(s) 63, 249, 1759
CaiI CAGNNNCTG 3 cut(s) 179, 1496, 1757
CciI TCATGA 1 cut(s) 1924
Cfr10I RCCGGY 1 cut(s) 1061
Cfr13I GGNCC 3 cut(s) 141, 1059, 1071
CsiI ACCWGGT 1 cut(s) 333
Csp6I GTAC 2 cut(s) 1153, 1409
CspCI CAANNNNNGTGG 2 cut(s) 404, 439
CviAII CATG 5 cut(s) 550, 1307, 1331, 1904, 1925
CviQI GTAC 2 cut(s) 1153, 1409
DdeI CTNAG 9 cut(s) 172, 366, 590, 630, 834, 998, 1049, 1191, 1803
DriI GACNNNNNGTC 1 cut(s) 625
Eam1104I CTCTTC 6 cut(s) 164, 182, 489, 669, 870, 1447
Eam1105I GACNNNNNGTC 1 cut(s) 625
EarI CTCTTC 6 cut(s) 164, 182, 489, 669, 870, 1447
Ecl136II GAGCTC 2 cut(s) 793, 943
Eco130I CCWWGG 5 cut(s) 56, 432, 1227, 1543, 1721
Eco147I AGGCCT 1 cut(s) 582
Eco24I GRGCYC 2 cut(s) 795, 945
Eco53kI GAGCTC 2 cut(s) 793, 943
EcoICRI GAGCTC 2 cut(s) 793, 943
EcoRI GAATTC 2 cut(s) 260, 315
EcoRII CCWGG 2 cut(s) 333, 1520
EcoT14I CCWWGG 5 cut(s) 56, 432, 1227, 1543, 1721
EcoT38I GRGCYC 2 cut(s) 795, 945
ErhI CCWWGG 5 cut(s) 56, 432, 1227, 1543, 1721
FaeI CATG 5 cut(s) 553, 1310, 1334, 1907, 1928
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FaqI GGGAC 1 cut(s) 1570
FatI CATG 5 cut(s) 549, 1306, 1330, 1903, 1924
FauI CCCGC 2 cut(s) 1547, 1800
FauNDI CATATG 1 cut(s) 1740
FbaI TGATCA 2 cut(s) 1285, 1714
Fnu4HI GCNGC 5 cut(s) 180, 1170, 1210, 1344, 1736
FokI GGATG 5 cut(s) 24, 288, 653, 1704, 1715
FriOI GRGCYC 2 cut(s) 795, 945
Fsp4HI GCNGC 5 cut(s) 180, 1170, 1210, 1344, 1736
FspBI CTAG 3 cut(s) 57, 119, 1722
GluI GCNGC 5 cut(s) 180, 1170, 1210, 1344, 1736
GsuI CTGGAG 3 cut(s) 917, 1323, 1473
HaeIII GGCC 5 cut(s) 142, 582, 1061, 1073, 1548
HapII CCGG 3 cut(s) 210, 244, 1062
Hin1II CATG 5 cut(s) 553, 1310, 1334, 1907, 1928
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HindIII AAGCTT 3 cut(s) 512, 828, 854
HinfI GANTC 8 cut(s) 195, 213, 219, 225, 1115, 1291, 1667, 2000
HpaII CCGG 3 cut(s) 210, 244, 1062
HphI GGTGA 2 cut(s) 1076, 1449
Hpy166II GTNNAC 2 cut(s) 251, 340
Hpy8I GTNNAC 2 cut(s) 251, 340
HpyAV CCTTC 7 cut(s) 931, 1061, 1074, 1479, 1922, 1970, 1974
HpyCH4III ACNGT 4 cut(s) 695, 1477, 1753, 1839
HpyCH4IV ACGT 1 cut(s) 1599
HpyCH4V TGCA 7 cut(s) 182, 251, 385, 977, 1514, 1833, 1842
HpyF10VI GCNNNNNNNGC 5 cut(s) 1340, 1493, 1732, 1741, 1839
HpyF3I CTNAG 9 cut(s) 172, 366, 590, 630, 834, 998, 1049, 1191, 1803
HpySE526I ACGT 1 cut(s) 1599
Hsp92II CATG 5 cut(s) 553, 1310, 1334, 1907, 1928
Ksp22I TGATCA 2 cut(s) 1285, 1714
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 4 cut(s) 940, 948, 1245, 1492
Lsp1109I GCAGC 5 cut(s) 166, 1156, 1221, 1330, 1747
LweI GCATC 4 cut(s) 879, 1523, 1846, 1930
MabI ACCWGGT 1 cut(s) 333
MaeI CTAG 3 cut(s) 57, 119, 1722
MaeII ACGT 1 cut(s) 1599
MaeIII GTNAC 6 cut(s) 574, 822, 1349, 1636, 1705, 1747
MbiI CCGCTC 2 cut(s) 192, 1807
MflI RGATCY 3 cut(s) 146, 1045, 1535
MhlI GDGCHC 3 cut(s) 253, 795, 945
MlyI GAGTC 1 cut(s) 1661
MmeI TCCRAC 1 cut(s) 137
MroXI GAANNNNTTC 2 cut(s) 465, 1084
MseI TTAA 1 cut(s) 1029
MslI CAYNNNNRTG 2 cut(s) 1462, 1929
MspA1I CMGCKG 3 cut(s) 721, 1343, 1914
MspI CCGG 3 cut(s) 210, 244, 1062
MspR9I CCNGG 2 cut(s) 335, 1522
Mva1269I GAATGC 1 cut(s) 1835
MvaI CCWGG 2 cut(s) 335, 1522
MwoI GCNNNNNNNGC 5 cut(s) 1340, 1493, 1732, 1741, 1839
NdeI CATATG 1 cut(s) 1740
NlaIII CATG 5 cut(s) 553, 1310, 1334, 1907, 1928
NlaIV GGNNCC 3 cut(s) 208, 1072, 1785
NmuCI GTSAC 2 cut(s) 574, 1705
NspI RCATGY 1 cut(s) 1334
PagI TCATGA 1 cut(s) 1924
PceI AGGCCT 1 cut(s) 582
PciSI GCTCTTC 1 cut(s) 182
PcsI WCGNNNNNNNCGW 1 cut(s) 486
PctI GAATGC 1 cut(s) 1835
PdmI GAANNNNTTC 2 cut(s) 465, 1084
PfeI GAWTC 7 cut(s) 195, 213, 219, 225, 1115, 1291, 2000
PflMI CCANNNNNTGG 2 cut(s) 1496, 1874
PfoI TCCNGGA 1 cut(s) 1520
PkrI GCNGC 5 cut(s) 181, 1171, 1211, 1345, 1737
PleI GAGTC 1 cut(s) 1661
PpsI GAGTC 1 cut(s) 1661
Psp124BI GAGCTC 2 cut(s) 795, 945
Psp6I CCWGG 2 cut(s) 333, 1520
PspGI CCWGG 2 cut(s) 333, 1520
PspN4I GGNNCC 3 cut(s) 208, 1072, 1785
PspPI GGNCC 3 cut(s) 141, 1059, 1071
PstI CTGCAG 1 cut(s) 184
PstNI CAGNNNCTG 3 cut(s) 179, 1496, 1757
PsuI RGATCY 3 cut(s) 146, 1045, 1535
PvuII CAGCTG 2 cut(s) 721, 1343
RsaI GTAC 2 cut(s) 1154, 1410
RsaNI GTAC 2 cut(s) 1153, 1409
RseI CAYNNNNRTG 2 cut(s) 1462, 1929
SacI GAGCTC 2 cut(s) 795, 945
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 1 cut(s) 1029
SatI GCNGC 5 cut(s) 180, 1170, 1210, 1344, 1736
Sau96I GGNCC 3 cut(s) 141, 1059, 1071
SchI GAGTC 1 cut(s) 1661
ScrFI CCNGG 2 cut(s) 335, 1522
SduI GDGCHC 3 cut(s) 253, 795, 945
SexAI ACCWGGT 1 cut(s) 333
SfaNI GCATC 4 cut(s) 879, 1523, 1846, 1930
SfcI CTRYAG 1 cut(s) 180
SmiMI CAYNNNNRTG 2 cut(s) 1462, 1929
SmlI CTYRAG 2 cut(s) 6, 509
SmoI CTYRAG 2 cut(s) 6, 509
SseBI AGGCCT 1 cut(s) 582
SspI AATATT 1 cut(s) 1990
SspMI CTAG 3 cut(s) 57, 119, 1722
SstI GAGCTC 2 cut(s) 795, 945
StuI AGGCCT 1 cut(s) 582
StyD4I CCNGG 2 cut(s) 333, 1520
StyI CCWWGG 5 cut(s) 56, 432, 1227, 1543, 1721
TaaI ACNGT 4 cut(s) 695, 1477, 1753, 1839
TaiI ACGT 1 cut(s) 1602
TaqI TCGA 6 cut(s) 198, 348, 469, 672, 1088, 1939
TaqII GACCGA 1 cut(s) 1154
TatI WGTACW 1 cut(s) 1408
TfiI GAWTC 7 cut(s) 195, 213, 219, 225, 1115, 1291, 2000
Tru1I TTAA 1 cut(s) 1029
Tru9I TTAA 1 cut(s) 1029
TscAI CASTG 4 cut(s) 700, 1480, 1758, 1844
TseFI GTSAC 2 cut(s) 574, 1705
TseI GCWGC 5 cut(s) 179, 1169, 1209, 1343, 1735
Tsp45I GTSAC 2 cut(s) 574, 1705
TspDTI ATGAA 8 cut(s) 585, 864, 972, 1278, 1379, 1386, 1707, 1941
TspRI CASTG 4 cut(s) 700, 1480, 1758, 1844
Van91I CCANNNNNTGG 2 cut(s) 1496, 1874
VneI GTGCAC 1 cut(s) 249
XapI RAATTY 8 cut(s) 260, 267, 296, 315, 410, 1096, 1672, 1813
XceI RCATGY 1 cut(s) 1334
XcmI CCANNNNNNNNNTGG 1 cut(s) 1550
XmaJI CCTAGG 2 cut(s) 56, 1721
XmnI GAANNNNTTC 2 cut(s) 465, 1084
XspI CTAG 3 cut(s) 57, 119, 1722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.