Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026403.1

Orthogroup ID

OG0007401

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1019

Gene Structure 1018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026403.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1018 bp

atggaggagactaccacacaaatttgtttccctattgattctcaatctcctgatatcaagcttgctactctcctgcttgctaccattcaggaagctaaagaccgaattcaggaaaccaaagaccgggtttaccagatcgaatatgtcttccttgctcagctataccccttattacaatccaagtccgaaactctccagaaatttcaagatgagtggaaatccaaggaagctaatctcttgcttctaattgaaacacttcgagctgaaaacgaactaaccattgaggagaaccgctcgctcaagcttggcagggaaaagatgttcagagaaaaggaggacattataaaccaactgcgagatgaagtgacaggcctacagctaaggagtgatgagctggaacaaatgcttgaccgcaagtctaaggaagctgatgagggaatggaattgcggagtaagttgctccaagaggttgaattgaaagacagtgtcgttgtgagtaaggacaagcaactgaaagagagtgaagaaagtagaaatgtgctttctgcgaaagtgagtgatcttgaaaaaagagctgatgagctcaaacaaaatctgttcaagaagattgagttacaagcttctgagatcgtgaacaatgaaaagcttttgaagtatcgggaagaagagaaaaaactaatgttggccaaattgaaaaatgtggaagaaaatgttagccaactccagaaggagctcctaacaaagaatgaagaagtggaagattgtgcaagagagaaaaaacttcttctgagaaaaatgactggtttagaggagaaagttactgagctacaaggggatctcagaggcagggccggtgaagcggccaaaagaaggggttcgactgaaaatttacaccagcaggttgaatcaataaccgcagatttactcaccgagaggacgaagtacggggaacttactgctgcttacaaaagtctaaaatctcagcacatatatctccgcagcaaatatggtcttaccc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0006950 GO:0006974 GO:0007276 GO:0008150 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0019953 GO:0022414 GO:0032501 GO:0032504 GO:0033554 GO:0044703 GO:0048609 GO:0050896 GO:0051704 GO:0051716

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAE2

Protein Analysis

339

Amino Acids

39.44

Weight (kDa)

5.43

Isoelectric Point (pI)

54.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52115
fragaria_vesca	FvH4_7g00721 FvH4_7g00721 FvH4_7g00721
malus_domestica	MD02G1315100.v1.1 MD07G1006900.v1.1
prunus_persica	Prupe.2G009900_v2.0.a1 Prupe.2G009900_v2.0.a1 Prupe.2G009900_v2.0.a1
pyrus_communis	pycom02g26410 pycom07g00550
rosa_chinensis	RchiOBHm_Chr1g0314941
rosa_laevigata	RLG00000030753
rosa_multiflora	Rmu_sc0005015.1_g000001 Rmu_sc0005168.1_g000010 Rmu_sc0026403.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331660
rosa_rugosa	Rorug01G0003100 Rorug01G0003200.1 Rorug01G0003300
rosa_samantha	Rh1AG014100 Rh1BG005800 Rh1CG012300 Rh1DG007700
rosa_wichuraiana	Rw1G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
Acc36I	ACCTGC	1 cut(s)	889
AccBSI	CCGCTC	1 cut(s)	294
AciI	CCGC	6 cut(s)	292, 412, 448, 860, 915, 997
AclWI	GGATC	1 cut(s)	843
AcoI	YGGCCR	2 cut(s)	684, 861
AcsI	RAATTY	4 cut(s)	21, 105, 200, 886
AfaI	GTAC	1 cut(s)	944
AfiI	CCNNNNNNNGG	3 cut(s)	109, 123, 870
AgsI	TTSAA	9 cut(s)	206, 251, 473, 478, 566, 601, 652, 694, 905
AhdI	GACNNNNNGTC	1 cut(s)	415
AloI	GAACNNNNNNTCC	2 cut(s)	305, 337
Alw21I	GWGCWC	2 cut(s)	585, 735
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	1 cut(s)	843
AoxI	GGCC	4 cut(s)	370, 684, 849, 861
ApeKI	GCWGC	2 cut(s)	959, 999
ApoI	RAATTY	4 cut(s)	21, 105, 200, 886
Asp700I	GAANNNNTTC	2 cut(s)	255, 874
AspS9I	GGNCC	1 cut(s)	849
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	2 cut(s)	866, 919
BalI	TGGCCA	1 cut(s)	686
BanII	GRGCYC	2 cut(s)	585, 735
BbsI	GAAGAC	1 cut(s)	139
Bbv12I	GWGCWC	2 cut(s)	585, 735
BbvI	GCAGC	2 cut(s)	946, 1011
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	2
BfmI	CTRYAG	1 cut(s)	374
BfuAI	ACCTGC	1 cut(s)	889
BisI	GCNGC	3 cut(s)	861, 960, 1000
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	3 cut(s)	862, 961, 1001
Bme1390I	CCNGG	1 cut(s)	125
BmeRI	GACNNNNNGTC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	849
BmrFI	CCNGG	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	139
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
BpmI	CTGGAG	2 cut(s)	179, 707
Bpu10I	CCTNAGC	1 cut(s)	380
Bpu1102I	GCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 123, 870
Bse118I	RCCGGY	1 cut(s)	851
Bse1I	ACTGG	1 cut(s)	805
BseDI	CCNNGG	1 cut(s)	222
BseLI	CCNNNNNNNGG	3 cut(s)	109, 123, 870
BseMII	CTCAG	6 cut(s)	170, 615, 779, 813, 853, 995
BseNI	ACTGG	1 cut(s)	805
BseRI	GAGGAG	3 cut(s)	20, 299, 824
BseXI	GCAGC	2 cut(s)	946, 1011
BshFI	GGCC	4 cut(s)	372, 686, 851, 863
BsiHKAI	GWGCWC	2 cut(s)	585, 735
BsiSI	CCGG	2 cut(s)	124, 852
BslI	CCNNNNNNNGG	3 cut(s)	109, 123, 870
BsmAI	GTCTC	1 cut(s)	2
BsnI	GGCC	4 cut(s)	372, 686, 851, 863
Bsp1286I	GDGCHC	2 cut(s)	585, 735
Bsp143I	GATC	4 cut(s)	135, 559, 627, 835
Bsp1720I	GCTNAGC	1 cut(s)	156
BspACI	CCGC	6 cut(s)	292, 412, 448, 860, 915, 997
BspANI	GGCC	4 cut(s)	372, 686, 851, 863
BspCNI	CTCAG	6 cut(s)	169, 616, 780, 814, 852, 994
BspMI	ACCTGC	1 cut(s)	889
BspPI	GGATC	1 cut(s)	843
BsrBI	CCGCTC	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	851
BsrI	ACTGG	1 cut(s)	805
BssAI	RCCGGY	1 cut(s)	851
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	4 cut(s)	135, 559, 627, 835
BssT1I	CCWWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	1 cut(s)	660
BstC8I	GCNNGC	3 cut(s)	63, 78, 296
BstDEI	CTNAG	8 cut(s)	156, 380, 420, 624, 788, 822, 839, 981
BstKTI	GATC	4 cut(s)	138, 562, 630, 838
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	4 cut(s)	135, 559, 627, 835
BstMWI	GCNNNNNNNGC	1 cut(s)	857
BstSCI	CCNGG	1 cut(s)	123
BstSFI	CTRYAG	1 cut(s)	374
BstV1I	GCAGC	2 cut(s)	946, 1011
BstV2I	GAAGAC	1 cut(s)	139
BstX2I	RGATCY	1 cut(s)	835
BstYI	RGATCY	1 cut(s)	835
BsuRI	GGCC	4 cut(s)	372, 686, 851, 863
BtsIMutI	CAGTG	1 cut(s)	490
BveI	ACCTGC	1 cut(s)	889
Cac8I	GCNNGC	3 cut(s)	63, 78, 296
Cfr10I	RCCGGY	1 cut(s)	851
Cfr13I	GGNCC	1 cut(s)	849
Csp6I	GTAC	1 cut(s)	943
CspCI	CAANNNNNGTGG	2 cut(s)	194, 229
CviQI	GTAC	1 cut(s)	943
DdeI	CTNAG	8 cut(s)	156, 380, 420, 624, 788, 822, 839, 981
DpnI	GATC	4 cut(s)	137, 561, 629, 837
DpnII	GATC	4 cut(s)	135, 559, 627, 835
DriI	GACNNNNNGTC	1 cut(s)	415
EaeI	YGGCCR	2 cut(s)	684, 861
Eam1104I	CTCTTC	1 cut(s)	660
Eam1105I	GACNNNNNGTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	660
Ecl136II	GAGCTC	2 cut(s)	583, 733
Eco130I	CCWWGG	1 cut(s)	222
Eco147I	AGGCCT	1 cut(s)	372
Eco24I	GRGCYC	2 cut(s)	585, 735
Eco32I	GATATC	1 cut(s)	55
Eco53kI	GAGCTC	2 cut(s)	583, 733
EcoICRI	GAGCTC	2 cut(s)	583, 733
EcoRI	GAATTC	1 cut(s)	105
EcoRV	GATATC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	2 cut(s)	585, 735
ErhI	CCWWGG	1 cut(s)	222
FaiI	YATR	6 cut(s)	144, 163, 344, 989, 991, 1008
Fnu4HI	GCNGC	3 cut(s)	861, 960, 1000
FriOI	GRGCYC	2 cut(s)	585, 735
Fsp4HI	GCNGC	3 cut(s)	861, 960, 1000
GluI	GCNGC	3 cut(s)	861, 960, 1000
GsuI	CTGGAG	2 cut(s)	179, 707
HaeIII	GGCC	4 cut(s)	372, 686, 851, 863
HapII	CCGG	2 cut(s)	124, 852
HindIII	AAGCTT	4 cut(s)	59, 302, 618, 644
HinfI	GANTC	2 cut(s)	38, 905
HpaII	CCGG	2 cut(s)	124, 852
HphI	GGTGA	2 cut(s)	866, 919
Hpy166II	GTNNAC	2 cut(s)	130, 634
Hpy188I	TCNGA	5 cut(s)	187, 326, 625, 789, 842
Hpy8I	GTNNAC	2 cut(s)	130, 634
HpyAV	CCTTC	2 cut(s)	721, 864
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4V	TGCA	1 cut(s)	767
HpyF10VI	GCNNNNNNNGC	1 cut(s)	857
HpyF3I	CTNAG	8 cut(s)	156, 380, 420, 624, 788, 822, 839, 981
Kzo9I	GATC	4 cut(s)	135, 559, 627, 835
LmnI	GCTCC	3 cut(s)	465, 730, 738
Lsp1109I	GCAGC	2 cut(s)	946, 1011
MaeIII	GTNAC	3 cut(s)	364, 612, 817
MalI	GATC	4 cut(s)	137, 561, 629, 837
MbiI	CCGCTC	1 cut(s)	294
MboI	GATC	4 cut(s)	135, 559, 627, 835
MboII	GAAGA	9 cut(s)	139, 536, 616, 674, 677, 716, 761, 770, 776
MflI	RGATCY	1 cut(s)	835
MhlI	GDGCHC	2 cut(s)	585, 735
MlsI	TGGCCA	1 cut(s)	686
MluCI	AATT	8 cut(s)	21, 105, 200, 246, 443, 473, 689, 886
MluNI	TGGCCA	1 cut(s)	686
MnlI	CCTC	7 cut(s)	277, 328, 427, 460, 802, 836, 927
Mox20I	TGGCCA	1 cut(s)	686
MroXI	GAANNNNTTC	2 cut(s)	255, 874
MscI	TGGCCA	1 cut(s)	686
Msp20I	TGGCCA	1 cut(s)	686
MspI	CCGG	2 cut(s)	124, 852
MspR9I	CCNGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	857
NciI	CCSGG	1 cut(s)	125
NdeII	GATC	4 cut(s)	135, 559, 627, 835
NmuCI	GTSAC	1 cut(s)	364
PceI	AGGCCT	1 cut(s)	372
PdmI	GAANNNNTTC	2 cut(s)	255, 874
PfeI	GAWTC	2 cut(s)	38, 905
PflFI	GACNNNGTC	1 cut(s)	485
PkrI	GCNGC	3 cut(s)	862, 961, 1001
PsiI	TTATAA	1 cut(s)	344
Psp124BI	GAGCTC	2 cut(s)	585, 735
PspPI	GGNCC	1 cut(s)	849
PsuI	RGATCY	1 cut(s)	835
PsyI	GACNNNGTC	1 cut(s)	485
RsaI	GTAC	1 cut(s)	944
RsaNI	GTAC	1 cut(s)	943
SacI	GAGCTC	2 cut(s)	585, 735
SatI	GCNGC	3 cut(s)	861, 960, 1000
Sau3AI	GATC	4 cut(s)	135, 559, 627, 835
Sau96I	GGNCC	1 cut(s)	849
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	2 cut(s)	585, 735
SfcI	CTRYAG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	8 cut(s)	21, 105, 200, 246, 443, 473, 689, 886
SseBI	AGGCCT	1 cut(s)	372
SsiI	CCGC	6 cut(s)	292, 412, 448, 860, 915, 997
SstI	GAGCTC	2 cut(s)	585, 735
StuI	AGGCCT	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	485
TaqI	TCGA	3 cut(s)	138, 259, 878
TaqII	GACCGA	1 cut(s)	117
TasI	AATT	8 cut(s)	21, 105, 200, 246, 443, 473, 689, 886
TauI	GCSGC	1 cut(s)	863
TfiI	GAWTC	2 cut(s)	38, 905
TscAI	CASTG	1 cut(s)	490
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	2 cut(s)	959, 999
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	3 cut(s)	375, 654, 762
TspRI	CASTG	1 cut(s)	490
Tth111I	GACNNNGTC	1 cut(s)	485
XapI	RAATTY	4 cut(s)	21, 105, 200, 886
XmnI	GAANNNNTTC	2 cut(s)	255, 874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.