AT3G52220

Multiple myeloma tumor-associated protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007359
Physical Location & Seq
Reverse (-)
19369362 .. 19371074
1713 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52220.1

Sequence Viewer

Length: 714 bp
ATGTATCATCCAACGAGGGGAGGTGTTCGCGGTGGTCGAGATCAATTCAGTTGGGATGAAGTCAAGGCTGATAAATATAGGGAGAACTATTTGGGTCACAGTATCAAAGCCCCTGTTGGAAGATGGCAAAAAGGTAAAGATCTTCATTGGTATGCTAGAGATAAAAAGCAAAAGGGTTCCGAGATGGATGCTATGAAAGAAGAGATTCAAAGAGTTAAGGAACAAGAGGAGCAGGCCATGAGGGAGGCTCTTGGCTTGGCACCAAAGTCCTCTACAAGGCCACAAGGAAATCGCCTTGATAAGCAAGAGTTTACTGAACTTGTGAAGAGGGGTTCGACAGCAGAGGACTTAGGTGCAGGGAATGCTGATGCTGTGTGGGTTCACGGTCTTGGATATGCTAAAGCACCACGACCTTGGGAAGATCCGAGCACCCTTGCATCCTCTCAGAAAGAAGATGCAGATTCAGCACGCTTACCAGCAGATACATCAGGGGTCAAAACTGTTGAAGATGGACCGGATGATGTTGAGAGGGACCAAAAGAAGGATAGGCGTGAGGAAAGGAAACCTGCAAAGAGAGAGAAGGAAGAAAGACATGATAGGCGTGAAAAACGCGAAAGGCATGAGAAGCGAAGCGCTCGTGATTCAGATGATAGAAAGAAGCACAAGAAAGAGAAGAAGGAGAAAAAAAGAAGGCATGACTCTGATTCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMtag

Protein Analysis

237

Amino Acids

27.54

Weight (kDa)

9.38

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMtag PF10159 8 - 85 2.7e-34 Multiple myeloma tumor-associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 574
AccB1I GGYRCC 1 cut(s) 259
AccII CGCG 2 cut(s) 30, 612
AciI CCGC 1 cut(s) 30
AclWI GGATC 1 cut(s) 416
AfeI AGCGCT 1 cut(s) 634
AfiI CCNNNNNNNGG 3 cut(s) 17, 276, 541
AgsI TTSAA 2 cut(s) 209, 506
Alw21I GWGCWC 1 cut(s) 431
AlwI GGATC 1 cut(s) 416
Aor51HI AGCGCT 1 cut(s) 634
AoxI GGCC 2 cut(s) 234, 278
Asp700I GAANNNNTTC 1 cut(s) 204
AspLEI GCGC 1 cut(s) 635
AspS9I GGNCC 2 cut(s) 512, 532
AvaII GGWCC 2 cut(s) 512, 532
BanI GGYRCC 1 cut(s) 259
BauI CACGAG 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 431
BccI CCATC 3 cut(s) 117, 178, 503
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BfaI CTAG 1 cut(s) 156
BfoI RGCGCY 1 cut(s) 636
BfuAI ACCTGC 1 cut(s) 574
BglII AGATCT 1 cut(s) 139
Bme18I GGWCC 2 cut(s) 512, 532
BmgT120I GGNCC 2 cut(s) 512, 532
BmiI GGNNCC 3 cut(s) 178, 261, 533
BmsI GCATC 4 cut(s) 178, 358, 445, 446
BplI GAGNNNNNCTC 2 cut(s) 232, 264
BsaJI CCNNGG 1 cut(s) 413
BsaWI WCCGGW 1 cut(s) 514
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 276, 541
BseDI CCNNGG 1 cut(s) 413
BseGI GGATG 5 cut(s) 7, 61, 193, 437, 523
BseLI CCNNNNNNNGG 3 cut(s) 17, 276, 541
BseMII CTCAG 1 cut(s) 458
BseRI GAGGAG 1 cut(s) 242
BsgI GTGCAG 1 cut(s) 375
Bsh1236I CGCG 2 cut(s) 30, 612
BshFI GGCC 2 cut(s) 236, 280
BshNI GGYRCC 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 431
BsiSI CCGG 1 cut(s) 515
BslFI GGGAC 1 cut(s) 545
BslI CCNNNNNNNGG 3 cut(s) 17, 276, 541
BsmFI GGGAC 1 cut(s) 545
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 2 cut(s) 236, 280
Bsp1286I GDGCHC 1 cut(s) 431
Bsp143I GATC 3 cut(s) 40, 139, 421
BspACI CCGC 1 cut(s) 30
BspANI GGCC 2 cut(s) 236, 280
BspCNI CTCAG 1 cut(s) 457
BspFNI CGCG 2 cut(s) 30, 612
BspLI GGNNCC 3 cut(s) 178, 261, 533
BspMI ACCTGC 1 cut(s) 574
BspPI GGATC 1 cut(s) 416
BspT107I GGYRCC 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 413
BssMI GATC 3 cut(s) 40, 139, 421
BssSI CACGAG 1 cut(s) 636
BssT1I CCWWGG 1 cut(s) 413
Bst2BI CACGAG 1 cut(s) 636
Bst4CI ACNGT 3 cut(s) 101, 386, 502
Bst6I CTCTTC 2 cut(s) 195, 320
BstAPI GCANNNNNTGC 1 cut(s) 362
BstC8I GCNNGC 2 cut(s) 234, 469
BstDEI CTNAG 2 cut(s) 349, 444
BstENI CCTNNNNNAGG 1 cut(s) 274
BstF5I GGATG 5 cut(s) 7, 61, 193, 437, 523
BstFNI CGCG 2 cut(s) 30, 612
BstH2I RGCGCY 1 cut(s) 636
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 3 cut(s) 43, 142, 424
BstMBI GATC 3 cut(s) 40, 139, 421
BstMWI GCNNNNNNNGC 3 cut(s) 362, 464, 625
BstUI CGCG 2 cut(s) 30, 612
BstX2I RGATCY 2 cut(s) 139, 421
BstXI CCANNNNNNTGG 1 cut(s) 414
BstYI RGATCY 2 cut(s) 139, 421
BsuRI GGCC 2 cut(s) 236, 280
BtsCI GGATG 5 cut(s) 7, 61, 193, 437, 523
BveI ACCTGC 1 cut(s) 574
Cac8I GCNNGC 2 cut(s) 234, 469
CfoI GCGC 1 cut(s) 635
Cfr13I GGNCC 2 cut(s) 512, 532
CviAII CATG 4 cut(s) 238, 593, 620, 695
CviJI RGCY 6 cut(s) 68, 110, 236, 248, 255, 280
CviKI_1 RGCY 6 cut(s) 68, 110, 236, 248, 255, 280
DdeI CTNAG 2 cut(s) 349, 444
DpnI GATC 3 cut(s) 42, 141, 423
DpnII GATC 3 cut(s) 40, 139, 421
Eam1104I CTCTTC 2 cut(s) 195, 320
EarI CTCTTC 2 cut(s) 195, 320
Eco130I CCWWGG 1 cut(s) 413
Eco47I GGWCC 2 cut(s) 512, 532
Eco47III AGCGCT 1 cut(s) 634
EcoNI CCTNNNNNAGG 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 413
ErhI CCWWGG 1 cut(s) 413
FaeI CATG 4 cut(s) 241, 596, 623, 698
FaiI YATR 8 cut(s) 78, 153, 194, 239, 396, 594, 621, 696
FaqI GGGAC 1 cut(s) 545
FatI CATG 4 cut(s) 237, 592, 619, 694
FokI GGATG 4 cut(s) 68, 200, 424, 530
FspBI CTAG 1 cut(s) 156
GlaI GCGC 1 cut(s) 634
HaeII RGCGCY 1 cut(s) 636
HaeIII GGCC 2 cut(s) 236, 280
HapII CCGG 1 cut(s) 515
HhaI GCGC 1 cut(s) 635
Hin1II CATG 4 cut(s) 241, 596, 623, 698
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HinfI GANTC 5 cut(s) 205, 461, 641, 698, 704
HpaII CCGG 1 cut(s) 515
Hpy166II GTNNAC 2 cut(s) 312, 382
Hpy188I TCNGA 6 cut(s) 181, 426, 447, 646, 703, 709
Hpy188III TCNNGA 2 cut(s) 38, 638
Hpy8I GTNNAC 2 cut(s) 312, 382
HpyAV CCTTC 4 cut(s) 535, 574, 670, 684
HpyCH4III ACNGT 3 cut(s) 101, 386, 502
HpyCH4V TGCA 4 cut(s) 356, 437, 458, 569
HpyF10VI GCNNNNNNNGC 3 cut(s) 362, 464, 625
HpyF3I CTNAG 2 cut(s) 349, 444
Hsp92II CATG 4 cut(s) 241, 596, 623, 698
HspAI GCGC 1 cut(s) 633
Kzo9I GATC 3 cut(s) 40, 139, 421
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 7 cut(s) 126, 218, 342, 474, 489, 528, 579
LweI GCATC 4 cut(s) 178, 358, 445, 446
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 95
MalI GATC 3 cut(s) 42, 141, 423
MboI GATC 3 cut(s) 40, 139, 421
MboII GAAGA 9 cut(s) 132, 134, 212, 337, 431, 464, 518, 596, 685
MflI RGATCY 2 cut(s) 139, 421
MhlI GDGCHC 1 cut(s) 431
MluCI AATT 1 cut(s) 44
MlyI GAGTC 1 cut(s) 692
MmeI TCCRAC 2 cut(s) 35, 97
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 150
MspI CCGG 1 cut(s) 515
Mva1269I GAATGC 1 cut(s) 367
MvnI CGCG 2 cut(s) 30, 612
MwoI GCNNNNNNNGC 3 cut(s) 362, 464, 625
NdeII GATC 3 cut(s) 40, 139, 421
NlaIII CATG 4 cut(s) 241, 596, 623, 698
NlaIV GGNNCC 3 cut(s) 178, 261, 533
NmuCI GTSAC 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 34
PctI GAATGC 1 cut(s) 367
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 4 cut(s) 205, 461, 641, 704
PleI GAGTC 1 cut(s) 692
PpsI GAGTC 1 cut(s) 692
PspN4I GGNNCC 3 cut(s) 178, 261, 533
PspPI GGNCC 2 cut(s) 512, 532
PsuI RGATCY 2 cut(s) 139, 421
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 1 cut(s) 216
Sau3AI GATC 3 cut(s) 40, 139, 421
Sau96I GGNCC 2 cut(s) 512, 532
SchI GAGTC 1 cut(s) 692
SduI GDGCHC 1 cut(s) 431
SetI ASST 5 cut(s) 25, 136, 355, 415, 568
SfaNI GCATC 4 cut(s) 178, 358, 445, 446
SinI GGWCC 2 cut(s) 512, 532
SmiMI CAYNNNNRTG 1 cut(s) 150
Sse9I AATT 1 cut(s) 44
SsiI CCGC 1 cut(s) 30
SspMI CTAG 1 cut(s) 156
StyI CCWWGG 1 cut(s) 413
TaaI ACNGT 3 cut(s) 101, 386, 502
TaqI TCGA 2 cut(s) 37, 335
TasI AATT 1 cut(s) 44
TfiI GAWTC 4 cut(s) 205, 461, 641, 704
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TseFI GTSAC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 3 cut(s) 72, 134, 209
VpaK11BI GGWCC 2 cut(s) 512, 532
XagI CCTNNNNNAGG 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.