Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007359

Physical Location & Seq

Genomic Coordinates Reverse (-)

61465929 .. 61468497

Gene Structure 2569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0485000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTTCTTCAAGCGAAATGGTGGTTTATTATTAGAACAACAATTATCGTCAGGTGAAGTTAATGTCGAAAAAATTAAATTGTTCAAATCACAAGAGTTAGAGAAGTCTACCGATAATTTTAATGTGGATAGAATTCTTGGCCAAGGAGGTCAAGGTACTGTATACAAAGGCATGTTGGAGGACGGGAGAATTGTTGCTGTGAAGAAGTCTAAAATAGTTGATGAAAACCAACTTTCAGAATTCATCAATGAGGTTGTCATTCTTTCCCAAATTAACCATAGAAATGTGGTTCAACTTTTGGGTTGTTGTTTAGAGACAGAAGTTCCTCTTTTGGTTTATGAATTTATACCAAATGGAACCCTTTCCAAGTATATTACAGAGCAGGTTGAAGACTTTCCACTCACATGGAAAATGCGCTTACGAATTGCCACAGAAATTGCAGGAGCTCTCTCGTACTTACATTATGCAGCTTCCTTTCCAATTTATCATAGAGATATCAAGTCTACAAACATACTTTTAGATGATAAATACAGAGCAAAAATTGCTGACTTTGGAACTTCGAGATCAATTGCTATTGACCAAACTCACCTGACCACATCACTTGTACATGGCACATTCGGTTACTTGGACCCTGAATACTTTCAGTCAAGCCAATTTACAGAGAAAAGTGATGTGTATAGCTTTGGGGTTGTTCTTGTTGAGCTCTTAACAGGACAAAAACCAATTTCTTTTCTAAGGTCAGAGGATGAAGGCAGAAGTCTTGCCACATATTTCATTATTTCCATGCACAAAGATCGTCTATTTGAAATTGTTGATGCTCAAGTTTTGAAGGAAGGATCGAAAGAAGATATCATAATAGTGGCAAACCTTGCAAGAAGATGTCTGAATTTGAATGGAAGGAAGCGCCCTACAATGAGAGAGGTCACAGCTGAGCTAGAAGTGATTCAAATGACAGAAAAGACTTCTAGTGGTGAACAAAACTATGAAGAGGTTGAATTTGTCAAAACTGAATCAGTCGAGCCATGGGATATTGCTTCAAGTTCAACAGGAACAGGATCAGCTTTGGATGTTGGTCGGGTTTCATCATTCCATGAAATCCCCCTATTATCTTTCAAGTCAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMtag

Protein Analysis

374

Amino Acids

42.24

Weight (kDa)

5.38

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	40 - 309	2.2e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	42 - 312	2.2e-49	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52220
fragaria_vesca	FvH4_2g10940 FvH4_2g10940
malus_domestica	MD06G1038200.v1.1
prunus_persica	Prupe.5G030400_v2.0.a1 Prupe.5G030400_v2.0.a1
pyrus_communis	pycom06g03190
rosa_chinensis	RchiOBHm_Chr2g0160691 RchiOBHm_Chr6g0269151
rosa_laevigata	RLG00000013879
rosa_multiflora	Rmu_sc0012217.1_g000007 Rmu_ssc0000381.1_g000028
rosa_roxburghii	Rroxscaffold_2G00089480 Rroxscaffold_7G00199010
rosa_rugosa	Rorug02G0485000 Rorug06G0045100
rosa_samantha	Rh2AG550000 Rh2BG564500 Rh2CG534400 Rh6AG165900 Rh6BG171200 Rh6CG164900 Rh6DG156500
rosa_wichuraiana	Rw2G045570 Rw6G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	373
AccI	GTMKAC	3 cut(s)	107, 162, 503
AclWI	GGATC	2 cut(s)	844, 1063
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	5 cut(s)	132, 239, 341, 886, 995
AfaI	GTAC	3 cut(s)	157, 455, 606
AluBI	AGCT	7 cut(s)	446, 470, 681, 703, 929, 934, 1061
AluI	AGCT	7 cut(s)	446, 470, 681, 703, 929, 934, 1061
Alw21I	GWGCWC	2 cut(s)	448, 705
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	2 cut(s)	844, 1063
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	5 cut(s)	132, 239, 341, 886, 995
Asp700I	GAANNNNTTC	4 cut(s)	361, 393, 639, 942
AspLEI	GCGC	2 cut(s)	417, 906
AspS9I	GGNCC	1 cut(s)	628
AsuHPI	GGTGA	3 cut(s)	65, 578, 983
AvaII	GGWCC	1 cut(s)	628
BalI	TGGCCA	1 cut(s)	141
BanII	GRGCYC	2 cut(s)	448, 705
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	2 cut(s)	448, 705
BbvI	GCAGC	1 cut(s)	479
BcgI	CGANNNNNNTGC	2 cut(s)	776, 810
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	2 cut(s)	935, 966
BfoI	RGCGCY	1 cut(s)	907
BfuAI	ACCTGC	1 cut(s)	373
BisI	GCNGC	1 cut(s)	468
BlpI	GCTNAGC	1 cut(s)	930
BlsI	GCNGC	1 cut(s)	469
Bme18I	GGWCC	1 cut(s)	628
BmgT120I	GGNCC	1 cut(s)	628
BmiI	GGNNCC	2 cut(s)	358, 630
BmsI	GCATC	1 cut(s)	805
BpiI	GAAGAC	1 cut(s)	396
Bpu1102I	GCTNAGC	1 cut(s)	930
BpuEI	CTTGAG	1 cut(s)	804
BsaJI	CCNNGG	2 cut(s)	142, 1022
BseDI	CCNNGG	2 cut(s)	142, 1022
BseGI	GGATG	2 cut(s)	751, 1072
BseMII	CTCAG	1 cut(s)	921
BseXI	GCAGC	1 cut(s)	479
BshFI	GGCC	1 cut(s)	141
BsiHKAI	GWGCWC	2 cut(s)	448, 705
BsmAI	GTCTC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	141
Bsp1286I	GDGCHC	2 cut(s)	448, 705
Bsp1407I	TGTACA	1 cut(s)	604
Bsp143I	GATC	4 cut(s)	563, 793, 836, 1055
Bsp1720I	GCTNAGC	1 cut(s)	930
Bsp19I	CCATGG	1 cut(s)	1022
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	922
BspLI	GGNNCC	2 cut(s)	358, 630
BspMI	ACCTGC	1 cut(s)	373
BspPI	GGATC	2 cut(s)	844, 1063
BsrGI	TGTACA	1 cut(s)	604
BssECI	CCNNGG	2 cut(s)	142, 1022
BssMI	GATC	4 cut(s)	563, 793, 836, 1055
BssNAI	GTATAC	1 cut(s)	163
BssT1I	CCWWGG	2 cut(s)	142, 1022
Bst1107I	GTATAC	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	981
BstAPI	GCANNNNNTGC	2 cut(s)	542, 869
BstAUI	TGTACA	1 cut(s)	604
BstDEI	CTNAG	2 cut(s)	734, 930
BstDSI	CCRYGG	1 cut(s)	1022
BstF5I	GGATG	2 cut(s)	751, 1072
BstH2I	RGCGCY	1 cut(s)	907
BstHHI	GCGC	2 cut(s)	417, 906
BstKTI	GATC	4 cut(s)	566, 796, 839, 1058
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	4 cut(s)	563, 793, 836, 1055
BstMWI	GCNNNNNNNGC	2 cut(s)	542, 869
BstNSI	RCATGY	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	479
BstV2I	GAAGAC	1 cut(s)	396
BstXI	CCANNNNNNTGG	1 cut(s)	405
BstZ17I	GTATAC	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	1022
BtsCI	GGATG	2 cut(s)	751, 1072
BveI	ACCTGC	1 cut(s)	373
CfoI	GCGC	2 cut(s)	417, 906
Cfr13I	GGNCC	1 cut(s)	628
Csp6I	GTAC	3 cut(s)	156, 454, 605
CspCI	CAANNNNNGTGG	4 cut(s)	418, 453, 583, 618
CviAII	CATG	6 cut(s)	172, 405, 608, 784, 1023, 1091
CviQI	GTAC	3 cut(s)	156, 454, 605
DdeI	CTNAG	2 cut(s)	734, 930
DpnI	GATC	4 cut(s)	565, 795, 838, 1057
DpnII	GATC	4 cut(s)	563, 793, 836, 1055
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	981
EarI	CTCTTC	1 cut(s)	981
Ecl136II	GAGCTC	2 cut(s)	446, 703
Eco130I	CCWWGG	2 cut(s)	142, 1022
Eco24I	GRGCYC	2 cut(s)	448, 705
Eco32I	GATATC	2 cut(s)	496, 850
Eco47I	GGWCC	1 cut(s)	628
Eco53kI	GAGCTC	2 cut(s)	446, 703
EcoICRI	GAGCTC	2 cut(s)	446, 703
EcoRI	GAATTC	2 cut(s)	132, 239
EcoRV	GATATC	2 cut(s)	496, 850
EcoT14I	CCWWGG	2 cut(s)	142, 1022
EcoT38I	GRGCYC	2 cut(s)	448, 705
ErhI	CCWWGG	2 cut(s)	142, 1022
FaeI	CATG	6 cut(s)	175, 408, 611, 787, 1026, 1094
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FatI	CATG	6 cut(s)	171, 404, 607, 783, 1022, 1090
FblI	GTMKAC	3 cut(s)	107, 162, 503
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	2 cut(s)	758, 1079
FriOI	GRGCYC	2 cut(s)	448, 705
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	2 cut(s)	935, 966
GlaI	GCGC	2 cut(s)	416, 905
GluI	GCNGC	1 cut(s)	468
HaeII	RGCGCY	1 cut(s)	907
HaeIII	GGCC	1 cut(s)	141
HhaI	GCGC	2 cut(s)	417, 906
Hin1II	CATG	6 cut(s)	175, 408, 611, 787, 1026, 1094
Hin6I	GCGC	2 cut(s)	415, 904
HinP1I	GCGC	2 cut(s)	415, 904
HinfI	GANTC	2 cut(s)	943, 1010
HphI	GGTGA	3 cut(s)	65, 578, 983
Hpy166II	GTNNAC	4 cut(s)	108, 163, 504, 974
Hpy188I	TCNGA	3 cut(s)	238, 742, 885
Hpy188III	TCNNGA	1 cut(s)	561
Hpy8I	GTNNAC	4 cut(s)	108, 163, 504, 974
HpyAV	CCTTC	4 cut(s)	743, 823, 827, 891
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	4 cut(s)	440, 467, 787, 872
HpyF10VI	GCNNNNNNNGC	2 cut(s)	542, 869
HpyF3I	CTNAG	2 cut(s)	734, 930
Hsp92II	CATG	6 cut(s)	175, 408, 611, 787, 1026, 1094
HspAI	GCGC	2 cut(s)	415, 904
Kzo9I	GATC	4 cut(s)	563, 793, 836, 1055
LmnI	GCTCC	1 cut(s)	443
LpnPI	CCDG	8 cut(s)	36, 368, 426, 602, 645, 696, 1032, 1038
Lsp1109I	GCAGC	1 cut(s)	479
LweI	GCATC	1 cut(s)	805
MaeI	CTAG	2 cut(s)	935, 966
MaeIII	GTNAC	2 cut(s)	620, 922
MalI	GATC	4 cut(s)	565, 795, 838, 1057
MboI	GATC	4 cut(s)	563, 793, 836, 1055
MboII	GAAGA	5 cut(s)	214, 401, 857, 888, 998
MfeI	CAATTG	1 cut(s)	567
MhlI	GDGCHC	2 cut(s)	448, 705
MlsI	TGGCCA	1 cut(s)	141
MluNI	TGGCCA	1 cut(s)	141
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	7 cut(s)	140, 172, 244, 336, 736, 913, 982
Mox20I	TGGCCA	1 cut(s)	141
MroXI	GAANNNNTTC	4 cut(s)	361, 393, 639, 942
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	5 cut(s)	60, 75, 120, 273, 707
MslI	CAYNNNNRTG	3 cut(s)	282, 403, 857
Msp20I	TGGCCA	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	929
MunI	CAATTG	1 cut(s)	567
MwoI	GCNNNNNNNGC	2 cut(s)	542, 869
NcoI	CCATGG	1 cut(s)	1022
NdeII	GATC	4 cut(s)	563, 793, 836, 1055
NlaIII	CATG	6 cut(s)	175, 408, 611, 787, 1026, 1094
NlaIV	GGNNCC	2 cut(s)	358, 630
NmuCI	GTSAC	1 cut(s)	922
NspI	RCATGY	1 cut(s)	175
PdmI	GAANNNNTTC	4 cut(s)	361, 393, 639, 942
PfeI	GAWTC	2 cut(s)	943, 1010
PkrI	GCNGC	1 cut(s)	469
Psp124BI	GAGCTC	2 cut(s)	448, 705
PspN4I	GGNNCC	2 cut(s)	358, 630
PspPI	GGNCC	1 cut(s)	628
PvuII	CAGCTG	1 cut(s)	929
RsaI	GTAC	3 cut(s)	157, 455, 606
RsaNI	GTAC	3 cut(s)	156, 454, 605
RseI	CAYNNNNRTG	3 cut(s)	282, 403, 857
SacI	GAGCTC	2 cut(s)	448, 705
SaqAI	TTAA	5 cut(s)	60, 75, 120, 273, 707
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	4 cut(s)	563, 793, 836, 1055
Sau96I	GGNCC	1 cut(s)	628
SduI	GDGCHC	2 cut(s)	448, 705
SfaNI	GCATC	1 cut(s)	805
SinI	GGWCC	1 cut(s)	628
SmiMI	CAYNNNNRTG	3 cut(s)	282, 403, 857
SmlI	CTYRAG	1 cut(s)	819
SmoI	CTYRAG	1 cut(s)	819
SspMI	CTAG	2 cut(s)	935, 966
SstI	GAGCTC	2 cut(s)	448, 705
StyI	CCWWGG	2 cut(s)	142, 1022
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	4 cut(s)	66, 560, 839, 1017
TatI	WGTACW	1 cut(s)	604
TfiI	GAWTC	2 cut(s)	943, 1010
Tru1I	TTAA	5 cut(s)	60, 75, 120, 273, 707
Tru9I	TTAA	5 cut(s)	60, 75, 120, 273, 707
TseFI	GTSAC	1 cut(s)	922
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	922
TspDTI	ATGAA	8 cut(s)	232, 237, 354, 762, 763, 999, 1071, 1107
VpaK11BI	GGWCC	1 cut(s)	628
XapI	RAATTY	5 cut(s)	132, 239, 341, 886, 995
XceI	RCATGY	1 cut(s)	175
XmiI	GTMKAC	3 cut(s)	107, 162, 503
XmnI	GAANNNNTTC	4 cut(s)	361, 393, 639, 942
XspI	CTAG	2 cut(s)	935, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.