Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007359

Physical Location & Seq

Genomic Coordinates Reverse (-)

3523678 .. 3530094

Gene Structure 6417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G030400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTATCATCCCACTAGAGGCGGTGTTCGTGGTGGTCGAGATCAATTTAGTTGGGATGATGTGAAGGTTGATAAACATCGAGAAAATTATCTTGGTCACAGTATCAAGGCACCTGTTGGAAGATGGCAAAAAGGTAAAGATCTACACTGGTATACGAAAGACAAAAAAACTCAGAATGCAGAAATGGAGGCTGCAAAAGAGGAGATTAAAAGAATTAAGGACGAGGAGGAGCAGGCTATGAGGGAGGCACTTGGCTTAGCTCCTAAGCGTGCAAGCCGAGGTCAAGGTAATCGGCTTGATAAGCATGAGTTTTCAGAACTTGTGAAGCGAGGCTCTACTGCAGAGGACTTAGGTGAAGGGCACGCTGAAGCAGCACGTGTACATGGTCTTGGTTTTTCAAGAGCACCTTGTCCTTGGGATGAGTCAAGTTCCCTTCCATCTACAGTCAAGGATGTTCCACCTGAAATGGGAAACATGGCTGTGCCTGATTCACCACCAAAAGAAAAAAATAAAGAGGAATTAGATGATGAAAGCAGTCGAAAGAAAAGGAGGCGTGAAGAGAGAAAGCGGGAGAAGCATGAGAGACATGAAAAGCGCGAAAAGCATGGAAAACAGCATTCCTCAGATGAGAGAAGGAAACACAAGAAACACAAGGAGAAGAGGAGACATGATTCAGACTCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMtag

Protein Analysis

229

Amino Acids

26.55

Weight (kDa)

9.45

Isoelectric Point (pI)

64.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52220
fragaria_vesca	FvH4_2g10940 FvH4_2g10940
malus_domestica	MD06G1038200.v1.1
prunus_persica	Prupe.5G030400_v2.0.a1 Prupe.5G030400_v2.0.a1
pyrus_communis	pycom06g03190
rosa_chinensis	RchiOBHm_Chr2g0160691 RchiOBHm_Chr6g0269151
rosa_laevigata	RLG00000013879
rosa_multiflora	Rmu_sc0012217.1_g000007 Rmu_ssc0000381.1_g000028
rosa_roxburghii	Rroxscaffold_2G00089480 Rroxscaffold_7G00199010
rosa_rugosa	Rorug02G0485000 Rorug06G0045100
rosa_samantha	Rh2AG550000 Rh2BG564500 Rh2CG534400 Rh6AG165900 Rh6BG171200 Rh6CG164900 Rh6DG156500
rosa_wichuraiana	Rw2G045570 Rw6G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	152
AccII	CGCG	1 cut(s)	597
AciI	CCGC	2 cut(s)	21, 568
AcuI	CTGAAG	1 cut(s)	387
AcvI	CACGTG	1 cut(s)	377
AfaI	GTAC	1 cut(s)	381
AfiI	CCNNNNNNNGG	2 cut(s)	17, 467
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	1 cut(s)	399
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw21I	GWGCWC	1 cut(s)	406
Alw26I	GTCTC	2 cut(s)	577, 658
AlwNI	CAGNNNCTG	1 cut(s)	680
ApeKI	GCWGC	2 cut(s)	191, 371
AspLEI	GCGC	1 cut(s)	597
AsuHPI	GGTGA	2 cut(s)	365, 483
BaeGI	GKGCMC	1 cut(s)	363
BanI	GGYRCC	1 cut(s)	109
BbrPI	CACGTG	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	2 cut(s)	178, 383
BccI	CCATC	2 cut(s)	117, 445
BcoDI	GTCTC	2 cut(s)	577, 658
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	2 cut(s)	339, 441
BglII	AGATCT	1 cut(s)	139
BisI	GCNGC	2 cut(s)	192, 372
BlpI	GCTNAGC	1 cut(s)	256
BlsI	GCNGC	2 cut(s)	193, 373
BmiI	GGNNCC	1 cut(s)	111
Bpu10I	CCTNAGC	1 cut(s)	264
Bpu1102I	GCTNAGC	1 cut(s)	256
BsaAI	YACGTR	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	277, 413
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 467
Bse1I	ACTGG	1 cut(s)	152
Bse8I	GATNNNNATC	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	277, 413
BseGI	GGATG	4 cut(s)	7, 61, 424, 457
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	17, 467
BseMII	CTCAG	2 cut(s)	185, 636
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	4 cut(s)	215, 239, 242, 676
BseSI	GKGCMC	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	178, 383
Bsh1236I	CGCG	1 cut(s)	597
BshNI	GGYRCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	406
BslI	CCNNNNNNNGG	2 cut(s)	17, 467
BsmAI	GTCTC	2 cut(s)	577, 658
BsmI	GAATGC	2 cut(s)	181, 616
Bsp1286I	GDGCHC	2 cut(s)	363, 406
Bsp1407I	TGTACA	1 cut(s)	379
Bsp143I	GATC	2 cut(s)	40, 139
Bsp1720I	GCTNAGC	1 cut(s)	256
BspACI	CCGC	2 cut(s)	21, 568
BspCNI	CTCAG	2 cut(s)	184, 635
BspFNI	CGCG	1 cut(s)	597
BspLI	GGNNCC	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	343
BspT107I	GGYRCC	1 cut(s)	109
BsrGI	TGTACA	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	2 cut(s)	277, 413
BssMI	GATC	2 cut(s)	40, 139
BssNAI	GTATAC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	413
Bst1107I	GTATAC	1 cut(s)	153
Bst4CI	ACNGT	2 cut(s)	101, 445
Bst6I	CTCTTC	2 cut(s)	552, 653
BstAUI	TGTACA	1 cut(s)	379
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	4 cut(s)	234, 270, 274, 363
BstDEI	CTNAG	5 cut(s)	171, 256, 264, 349, 622
BstF5I	GGATG	4 cut(s)	7, 61, 424, 457
BstFNI	CGCG	1 cut(s)	597
BstHHI	GCGC	1 cut(s)	597
BstKTI	GATC	2 cut(s)	43, 142
BstMAI	GTCTC	2 cut(s)	577, 658
BstMBI	GATC	2 cut(s)	40, 139
BstMWI	GCNNNNNNNGC	4 cut(s)	301, 371, 574, 601
BstSFI	CTRYAG	2 cut(s)	339, 441
BstSLI	GKGCMC	1 cut(s)	363
BstUI	CGCG	1 cut(s)	597
BstV1I	GCAGC	2 cut(s)	178, 383
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BstZ17I	GTATAC	1 cut(s)	153
BtsCI	GGATG	4 cut(s)	7, 61, 424, 457
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	4 cut(s)	234, 270, 274, 363
CaiI	CAGNNNCTG	1 cut(s)	680
CfoI	GCGC	1 cut(s)	597
Csp6I	GTAC	1 cut(s)	380
CviAII	CATG	7 cut(s)	305, 383, 475, 578, 587, 605, 668
CviJI	RGCY	8 cut(s)	191, 236, 255, 260, 276, 295, 333, 479
CviKI_1	RGCY	8 cut(s)	191, 236, 255, 260, 276, 295, 333, 479
CviQI	GTAC	1 cut(s)	380
DdeI	CTNAG	5 cut(s)	171, 256, 264, 349, 622
DpnI	GATC	2 cut(s)	42, 141
DpnII	GATC	2 cut(s)	40, 139
Eam1104I	CTCTTC	2 cut(s)	552, 653
EarI	CTCTTC	2 cut(s)	552, 653
Eco130I	CCWWGG	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	387
Eco72I	CACGTG	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	413
FaeI	CATG	7 cut(s)	308, 386, 478, 581, 590, 608, 671
FaiI	YATR	9 cut(s)	153, 239, 306, 384, 476, 579, 588, 606, 669
FalI	AAGNNNNNCTT	2 cut(s)	391, 423
FatI	CATG	7 cut(s)	304, 382, 474, 577, 586, 604, 667
FauI	CCCGC	1 cut(s)	561
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	2 cut(s)	192, 372
FokI	GGATG	3 cut(s)	68, 431, 464
Fsp4HI	GCNGC	2 cut(s)	192, 372
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	596
GluI	GCNGC	2 cut(s)	192, 372
HhaI	GCGC	1 cut(s)	597
Hin1II	CATG	7 cut(s)	308, 386, 478, 581, 590, 608, 671
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HinfI	GANTC	4 cut(s)	422, 488, 671, 677
HphI	GGTGA	2 cut(s)	365, 483
Hpy166II	GTNNAC	2 cut(s)	153, 380
Hpy188I	TCNGA	5 cut(s)	174, 316, 625, 676, 682
Hpy188III	TCNNGA	3 cut(s)	38, 80, 399
Hpy8I	GTNNAC	2 cut(s)	153, 380
HpyAV	CCTTC	4 cut(s)	58, 350, 443, 627
HpyCH4III	ACNGT	2 cut(s)	101, 445
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	4 cut(s)	179, 194, 272, 341
HpyF10VI	GCNNNNNNNGC	4 cut(s)	301, 371, 574, 601
HpyF3I	CTNAG	5 cut(s)	171, 256, 264, 349, 622
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	7 cut(s)	308, 386, 478, 581, 590, 608, 671
HspAI	GCGC	1 cut(s)	595
Kzo9I	GATC	2 cut(s)	40, 139
LmnI	GCTCC	2 cut(s)	229, 265
LpnPI	CCDG	5 cut(s)	126, 133, 218, 474, 498
Lsp1109I	GCAGC	2 cut(s)	178, 383
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	2 cut(s)	42, 141
MboI	GATC	2 cut(s)	40, 139
MboII	GAAGA	3 cut(s)	132, 569, 670
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	2 cut(s)	363, 406
MluCI	AATT	4 cut(s)	44, 85, 213, 518
MlyI	GAGTC	2 cut(s)	431, 671
MmeI	TCCRAC	1 cut(s)	97
MseI	TTAA	2 cut(s)	207, 216
MslI	CAYNNNNRTG	1 cut(s)	479
Mva1269I	GAATGC	2 cut(s)	181, 616
MvnI	CGCG	1 cut(s)	597
MwoI	GCNNNNNNNGC	4 cut(s)	301, 371, 574, 601
NdeII	GATC	2 cut(s)	40, 139
NlaIII	CATG	7 cut(s)	308, 386, 478, 581, 590, 608, 671
NlaIV	GGNNCC	1 cut(s)	111
NmeAIII	GCCGAG	1 cut(s)	302
NmuCI	GTSAC	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	34
PctI	GAATGC	2 cut(s)	181, 616
PfeI	GAWTC	2 cut(s)	488, 671
PkrI	GCNGC	2 cut(s)	193, 373
PleI	GAGTC	2 cut(s)	430, 671
PmaCI	CACGTG	1 cut(s)	377
PmlI	CACGTG	1 cut(s)	377
PpsI	GAGTC	2 cut(s)	430, 671
Ppu21I	YACGTR	1 cut(s)	377
PspCI	CACGTG	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	343
PstNI	CAGNNNCTG	1 cut(s)	680
PsuI	RGATCY	1 cut(s)	139
RsaI	GTAC	1 cut(s)	381
RsaNI	GTAC	1 cut(s)	380
RseI	CAYNNNNRTG	1 cut(s)	479
SaqAI	TTAA	2 cut(s)	207, 216
SatI	GCNGC	2 cut(s)	192, 372
Sau3AI	GATC	2 cut(s)	40, 139
SchI	GAGTC	2 cut(s)	431, 671
SduI	GDGCHC	2 cut(s)	363, 406
SfcI	CTRYAG	2 cut(s)	339, 441
SmiMI	CAYNNNNRTG	1 cut(s)	479
Sse9I	AATT	4 cut(s)	44, 85, 213, 518
SsiI	CCGC	2 cut(s)	21, 568
SspMI	CTAG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	413
TaaI	ACNGT	2 cut(s)	101, 445
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	3 cut(s)	37, 79, 538
TasI	AATT	4 cut(s)	44, 85, 213, 518
TatI	WGTACW	1 cut(s)	379
TfiI	GAWTC	2 cut(s)	488, 671
Tru1I	TTAA	2 cut(s)	207, 216
Tru9I	TTAA	2 cut(s)	207, 216
TscAI	CASTG	1 cut(s)	152
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	2 cut(s)	191, 371
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	2 cut(s)	543, 603
TspRI	CASTG	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	152
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.