Rroxscaffold_2G00089480

Multiple myeloma tumor-associated protein 2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007359
Physical Location & Seq
Reverse (-)
11460900 .. 11461703
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089480.1

Sequence Viewer

Length: 423 bp
ATGATCGACAAGCATTGTGAGAATTATCTTGGCCACAGTATCAATGCCCCTGTTGGTAGATGGCAAAAAGGTAATCGACTTGATAAGCATGAGTTCTCAGAACTTGTGAAGCGAGGTTCTACTGCAGAGGACTTGGGTGAAGGGCATGCAGAAGCAGCACACATACATGGTCTTGGTTTTTCAAGAGCACCTGTCTCTTGGGATGATTCAACTTCTCTTCAACCTACAGTCAATGGAGGTGCACCTGAAATAGGGGGTATTCCTGTGCCTAAGCTTCCACCAAAAGAAAAGGTTGAAGAGGAGTCCGAGGATGAAAGCAGTCGAAGGAAAAGGAGGCGTGAAGAGAGGAAGCACATGATGTCTCTTGTTGTTGTATTGATCATGAAAGAGGAGACTGGAACCCAGTTGAAGCCAGTAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMtag

Protein Analysis

140

Amino Acids

15.6

Weight (kDa)

6.39

Isoelectric Point (pI)

70.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMtag PF10159 3 - 28 7.8e-08 Multiple myeloma tumor-associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 5 cut(s) 183, 210, 221, 296, 409
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
Alw21I GWGCWC 2 cut(s) 190, 244
Alw26I GTCTC 3 cut(s) 199, 366, 386
Alw44I GTGCAC 1 cut(s) 240
AoxI GGCC 1 cut(s) 31
ApaLI GTGCAC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 244
BalI TGGCCA 1 cut(s) 33
Bbv12I GWGCWC 2 cut(s) 190, 244
BbvI GCAGC 1 cut(s) 167
BccI CCATC 1 cut(s) 54
BclI TGATCA 1 cut(s) 378
BcoDI GTCTC 3 cut(s) 199, 366, 386
BfmI CTRYAG 2 cut(s) 123, 225
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 400
BmrI ACTGGG 1 cut(s) 397
BmuI ACTGGG 1 cut(s) 397
Bpu10I CCTNAGC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 306
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse1I ACTGG 3 cut(s) 400, 403, 413
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 2 cut(s) 208, 316
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 3 cut(s) 400, 403, 413
BseRI GAGGAG 2 cut(s) 314, 404
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 1 cut(s) 167
BshFI GGCC 1 cut(s) 33
BsiHKAI GWGCWC 2 cut(s) 190, 244
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 3 cut(s) 199, 366, 386
BsnI GGCC 1 cut(s) 33
Bsp1286I GDGCHC 2 cut(s) 190, 244
Bsp143I GATC 2 cut(s) 3, 378
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 110
BspHI TCATGA 1 cut(s) 381
BspLI GGNNCC 1 cut(s) 400
BspMAI CTGCAG 1 cut(s) 127
BsrI ACTGG 3 cut(s) 400, 403, 413
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 2 cut(s) 3, 378
Bst4CI ACNGT 2 cut(s) 38, 229
Bst6I CTCTTC 3 cut(s) 222, 291, 336
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 97, 270
BstENI CCTNNNNNAGG 1 cut(s) 249
BstF5I GGATG 2 cut(s) 208, 316
BstKTI GATC 2 cut(s) 6, 381
BstMAI GTCTC 3 cut(s) 199, 366, 386
BstMBI GATC 2 cut(s) 3, 378
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNSI RCATGY 1 cut(s) 149
BstSFI CTRYAG 2 cut(s) 123, 225
BstSLI GKGCMC 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 167
BsuRI GGCC 1 cut(s) 33
BtsCI GGATG 2 cut(s) 208, 316
Cac8I GCNNGC 1 cut(s) 147
CciI TCATGA 1 cut(s) 381
CviAII CATG 5 cut(s) 89, 146, 167, 355, 382
CviJI RGCY 3 cut(s) 33, 274, 412
CviKI_1 RGCY 3 cut(s) 33, 274, 412
DdeI CTNAG 2 cut(s) 97, 270
DpnI GATC 2 cut(s) 5, 380
DpnII GATC 2 cut(s) 3, 378
EaeI YGGCCR 1 cut(s) 31
Eam1104I CTCTTC 3 cut(s) 222, 291, 336
EarI CTCTTC 3 cut(s) 222, 291, 336
EcoNI CCTNNNNNAGG 1 cut(s) 249
FaeI CATG 5 cut(s) 92, 149, 170, 358, 385
FaiI YATR 6 cut(s) 90, 147, 164, 168, 356, 383
FatI CATG 5 cut(s) 88, 145, 166, 354, 381
FbaI TGATCA 1 cut(s) 378
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 2 cut(s) 215, 323
Fsp4HI GCNGC 1 cut(s) 156
GluI GCNGC 1 cut(s) 156
HaeIII GGCC 1 cut(s) 33
Hin1II CATG 5 cut(s) 92, 149, 170, 358, 385
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 2 cut(s) 206, 302
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 2 cut(s) 100, 307
Hpy188III TCNNGA 2 cut(s) 183, 382
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 2 cut(s) 134, 318
HpyCH4III ACNGT 2 cut(s) 38, 229
HpyCH4V TGCA 3 cut(s) 125, 149, 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 2 cut(s) 97, 270
Hsp92II CATG 5 cut(s) 92, 149, 170, 358, 385
Ksp22I TGATCA 1 cut(s) 378
Kzo9I GATC 2 cut(s) 3, 378
LpnPI CCDG 6 cut(s) 63, 204, 258, 276, 381, 416
Lsp1109I GCAGC 1 cut(s) 167
MalI GATC 2 cut(s) 5, 380
MboI GATC 2 cut(s) 3, 378
MboII GAAGA 3 cut(s) 209, 308, 353
MhlI GDGCHC 2 cut(s) 190, 244
MlsI TGGCCA 1 cut(s) 33
MluCI AATT 1 cut(s) 22
MluNI TGGCCA 1 cut(s) 33
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 8 cut(s) 107, 121, 230, 292, 301, 327, 339, 382
Mox20I TGGCCA 1 cut(s) 33
MscI TGGCCA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 165
Msp20I TGGCCA 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 2 cut(s) 3, 378
NlaIII CATG 5 cut(s) 92, 149, 170, 358, 385
NlaIV GGNNCC 1 cut(s) 400
NspI RCATGY 1 cut(s) 149
PaeI GCATGC 1 cut(s) 149
PagI TCATGA 1 cut(s) 381
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 400
PstI CTGCAG 1 cut(s) 127
RseI CAYNNNNRTG 1 cut(s) 165
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 2 cut(s) 3, 378
SchI GAGTC 1 cut(s) 311
SduI GDGCHC 2 cut(s) 190, 244
SetI ASST 8 cut(s) 73, 118, 193, 226, 241, 247, 276, 294
SfcI CTRYAG 2 cut(s) 123, 225
SmiMI CAYNNNNRTG 1 cut(s) 165
SphI GCATGC 1 cut(s) 149
Sse9I AATT 1 cut(s) 22
TaaI ACNGT 2 cut(s) 38, 229
TaqI TCGA 3 cut(s) 6, 76, 322
TasI AATT 1 cut(s) 22
TfiI GAWTC 1 cut(s) 206
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 327, 398
VneI GTGCAC 1 cut(s) 240
XagI CCTNNNNNAGG 1 cut(s) 249
XceI RCATGY 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.